ISBli19

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAGP01000000 ND Brevibacterium linens
Brevibacterium linens BL2
Brevibacterium linens
Brevibacterium aurantiacum
DNA section
IS Length : 1430 bp

Ends


IR Length : 21/27

IRL : GAGGGTGTCAAATAGTTTGTGTACCGGGTCACAGCTGAAAGGACAGAATA
IRR : GAGCCTGTCAAGTAGTTTGTGTTCGGGATTGATTTACAAGTAGGGATTCA

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNAGATGGAANNNNN8

DNA sequence

GAGGGTGTCAAATAGTTTGTGTACCGGGTCACAGCTGAAAGGACAGAATAGTGACTGTGACGAATACACACTCGAATCCGAACCAGGCCAACGAAATTGT
TGACCAGCTCAAGGCCTCCGGGGCCCTCGACGAACTCTTTTCCAAGATCGATTCCGGCGAGGTCGAACTCACCGGCGATGGCGGTCTCGTCCCGGCCCTG
ATCAAGGAAACCCTCGAACGAGGACTCGGCGCTGAGATGACCTCGCACCTGGGCTACACAGCCGGCGACAGAGATGCCAAGACCACAACGAACTCGCGCA
ACGGAACGTATGCCAAGACAGTCGCTTCCGAAGCCGGTGACATCGAGATCAGCGTCCCCCGGGACCGTGATGGGTCGTTCACACCTCGTCTGGTGCCGAA
GGGTTCACGCCGACTCGGTGGCCTCGATGACATGATCATCTCGCTGTATGCCGGCGGGATGACGATCCGCGATATCCAACACCATCTGGTATCAACAATC
GGCACCGAACTCTCCCACGAGACGATCTCGAACATCACCGATGCCGTCCTCGACGCGGTCATGGAATGGCAGCAACGACCCCTCGAGGAGTTCTACCCCG
TCGTCTACCTCGACGCGATCCGCGTCAAGGTCCGCGACAACGGGCACGTGCGCTCGAAGGCCGCGCATATCGCTGTCGGTGTCGATATGGACGGCATCAA
GCATGTTCTGGGCATCTGGGTCCAGAACACCGAGGGAGCCTCGTTCTGGGCCCACGTGTGCGCCGAACTGGCCAACCGGGGAGTCCAGGACGTCCTCATC
GTCTGCTGCGACGGGCTCACGGGCCTACCGGATGCGATCGAGGCGACGTGGCCCGACTCCCTCGTCCAAACCTGCGTCGTGCACCTGATTCGGGCTGCGA
ACCGGTTCGTGTCCTATACCGACCGTAAGGCCGTGTCGAGGGCGCTGAAACCGATCTACGCTGCCGCCAACGAGGAAGCGGCGCTGACAGCGCTGACGAC
TTTCGCCGAGTCCGAACTGGGACGGAAGTATCCCTCGGCAGTAGCGGTGTTTGAAAACGCGTGGGACCGGTTCATACCGTTCCTGCAATTTCCACCAGCC
CTGCGGCGAGTCATCTATACGACGAACGCGATCGAGTCGCTGAACTACCAGCTGCGCAAGGTCACGAAGAACCGATCCCAGTTCCCCACCGATGACTCAG
TGGTGAAGCTGCTGTGGCTGGCGATCTGCAATATCGAGGACAAACGAGCCCGAGAACGAGAGAAAGAGAAGGGGAAAGGAAAGGCTCGGAAGGCCACGAC
GGGCCGACTCGTCGAGGGCCAGATCACGACGAACTGGAAACAGGCCCTGGCTCAACTGGCCGTGGCCTATCCAGACCGGATGAATCCCTACTTGTAAATC
AATCCCGAACACAAACTACTTGACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa511397+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTVTNTHSNPNQANEIVDQLKASGALDELFSKIDSGEVELTGDGGLVPALIKETLERGLGAEMTSHLGYTAGDRDAKTTTNSRNGTYAKTVASEAGDIEI
SVPRDRDGSFTPRLVPKGSRRLGGLDDMIISLYAGGMTIRDIQHHLVSTIGTELSHETISNITDAVLDAVMEWQQRPLEEFYPVVYLDAIRVKVRDNGHV
RSKAAHIAVGVDMDGIKHVLGIWVQNTEGASFWAHVCAELANRGVQDVLIVCCDGLTGLPDAIEATWPDSLVQTCVVHLIRAANRFVSYTDRKAVSRALK
PIYAAANEEAALTALTTFAESELGRKYPSAVAVFENAWDRFIPFLQFPPALRRVIYTTNAIESLNYQLRKVTKNRSQFPTDDSVVKLLWLAICNIEDKRA
REREKEKGKGKARKATTGRLVEGQITTNWKQALAQLAVAYPDRMNPYL

 

Blast result :
Comments
ISBli19 is 84% aa similar to ISMlu11.
References
1] Sebastien Levesque (2017) Direct submission.
2] DOE Joint Genome Institute (2005) Direct GenBank submission.