ISBli19
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAGP01000000 | ND | Brevibacterium linens | Brevibacterium linens BL2 Brevibacterium linens Brevibacterium aurantiacum |
DNA section
IS Length : 1430 bp
Ends
IR Length : 21/27
IRL : GAGGGTGTCAAATAGTTTGTGTACCGGGTCACAGCTGAAAGGACAGAATA
IRR : GAGCCTGTCAAGTAGTTTGTGTTCGGGATTGATTTACAAGTAGGGATTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNN | AGATGGAA | NNNNN | 8 |
DNA sequence
GAGGGTGTCAAATAGTTTGTGTACCGGGTCACAGCTGAAAGGACAGAATAGTGACTGTGACGAATACACACTCGAATCCGAACCAGGCCAACGAAATTGT
TGACCAGCTCAAGGCCTCCGGGGCCCTCGACGAACTCTTTTCCAAGATCGATTCCGGCGAGGTCGAACTCACCGGCGATGGCGGTCTCGTCCCGGCCCTG
ATCAAGGAAACCCTCGAACGAGGACTCGGCGCTGAGATGACCTCGCACCTGGGCTACACAGCCGGCGACAGAGATGCCAAGACCACAACGAACTCGCGCA
ACGGAACGTATGCCAAGACAGTCGCTTCCGAAGCCGGTGACATCGAGATCAGCGTCCCCCGGGACCGTGATGGGTCGTTCACACCTCGTCTGGTGCCGAA
GGGTTCACGCCGACTCGGTGGCCTCGATGACATGATCATCTCGCTGTATGCCGGCGGGATGACGATCCGCGATATCCAACACCATCTGGTATCAACAATC
GGCACCGAACTCTCCCACGAGACGATCTCGAACATCACCGATGCCGTCCTCGACGCGGTCATGGAATGGCAGCAACGACCCCTCGAGGAGTTCTACCCCG
TCGTCTACCTCGACGCGATCCGCGTCAAGGTCCGCGACAACGGGCACGTGCGCTCGAAGGCCGCGCATATCGCTGTCGGTGTCGATATGGACGGCATCAA
GCATGTTCTGGGCATCTGGGTCCAGAACACCGAGGGAGCCTCGTTCTGGGCCCACGTGTGCGCCGAACTGGCCAACCGGGGAGTCCAGGACGTCCTCATC
GTCTGCTGCGACGGGCTCACGGGCCTACCGGATGCGATCGAGGCGACGTGGCCCGACTCCCTCGTCCAAACCTGCGTCGTGCACCTGATTCGGGCTGCGA
ACCGGTTCGTGTCCTATACCGACCGTAAGGCCGTGTCGAGGGCGCTGAAACCGATCTACGCTGCCGCCAACGAGGAAGCGGCGCTGACAGCGCTGACGAC
TTTCGCCGAGTCCGAACTGGGACGGAAGTATCCCTCGGCAGTAGCGGTGTTTGAAAACGCGTGGGACCGGTTCATACCGTTCCTGCAATTTCCACCAGCC
CTGCGGCGAGTCATCTATACGACGAACGCGATCGAGTCGCTGAACTACCAGCTGCGCAAGGTCACGAAGAACCGATCCCAGTTCCCCACCGATGACTCAG
TGGTGAAGCTGCTGTGGCTGGCGATCTGCAATATCGAGGACAAACGAGCCCGAGAACGAGAGAAAGAGAAGGGGAAAGGAAAGGCTCGGAAGGCCACGAC
GGGCCGACTCGTCGAGGGCCAGATCACGACGAACTGGAAACAGGCCCTGGCTCAACTGGCCGTGGCCTATCCAGACCGGATGAATCCCTACTTGTAAATC
AATCCCGAACACAAACTACTTGACAGGCTC
TGACCAGCTCAAGGCCTCCGGGGCCCTCGACGAACTCTTTTCCAAGATCGATTCCGGCGAGGTCGAACTCACCGGCGATGGCGGTCTCGTCCCGGCCCTG
ATCAAGGAAACCCTCGAACGAGGACTCGGCGCTGAGATGACCTCGCACCTGGGCTACACAGCCGGCGACAGAGATGCCAAGACCACAACGAACTCGCGCA
ACGGAACGTATGCCAAGACAGTCGCTTCCGAAGCCGGTGACATCGAGATCAGCGTCCCCCGGGACCGTGATGGGTCGTTCACACCTCGTCTGGTGCCGAA
GGGTTCACGCCGACTCGGTGGCCTCGATGACATGATCATCTCGCTGTATGCCGGCGGGATGACGATCCGCGATATCCAACACCATCTGGTATCAACAATC
GGCACCGAACTCTCCCACGAGACGATCTCGAACATCACCGATGCCGTCCTCGACGCGGTCATGGAATGGCAGCAACGACCCCTCGAGGAGTTCTACCCCG
TCGTCTACCTCGACGCGATCCGCGTCAAGGTCCGCGACAACGGGCACGTGCGCTCGAAGGCCGCGCATATCGCTGTCGGTGTCGATATGGACGGCATCAA
GCATGTTCTGGGCATCTGGGTCCAGAACACCGAGGGAGCCTCGTTCTGGGCCCACGTGTGCGCCGAACTGGCCAACCGGGGAGTCCAGGACGTCCTCATC
GTCTGCTGCGACGGGCTCACGGGCCTACCGGATGCGATCGAGGCGACGTGGCCCGACTCCCTCGTCCAAACCTGCGTCGTGCACCTGATTCGGGCTGCGA
ACCGGTTCGTGTCCTATACCGACCGTAAGGCCGTGTCGAGGGCGCTGAAACCGATCTACGCTGCCGCCAACGAGGAAGCGGCGCTGACAGCGCTGACGAC
TTTCGCCGAGTCCGAACTGGGACGGAAGTATCCCTCGGCAGTAGCGGTGTTTGAAAACGCGTGGGACCGGTTCATACCGTTCCTGCAATTTCCACCAGCC
CTGCGGCGAGTCATCTATACGACGAACGCGATCGAGTCGCTGAACTACCAGCTGCGCAAGGTCACGAAGAACCGATCCCAGTTCCCCACCGATGACTCAG
TGGTGAAGCTGCTGTGGCTGGCGATCTGCAATATCGAGGACAAACGAGCCCGAGAACGAGAGAAAGAGAAGGGGAAAGGAAAGGCTCGGAAGGCCACGAC
GGGCCGACTCGTCGAGGGCCAGATCACGACGAACTGGAAACAGGCCCTGGCTCAACTGGCCGTGGCCTATCCAGACCGGATGAATCCCTACTTGTAAATC
AATCCCGAACACAAACTACTTGACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 51 | 1397 | + | No |
Chemistry : DDE
ORF sequence :
MTVTNTHSNPNQANEIVDQLKASGALDELFSKIDSGEVELTGDGGLVPALIKETLERGLGAEMTSHLGYTAGDRDAKTTTNSRNGTYAKTVASEAGDIEI
SVPRDRDGSFTPRLVPKGSRRLGGLDDMIISLYAGGMTIRDIQHHLVSTIGTELSHETISNITDAVLDAVMEWQQRPLEEFYPVVYLDAIRVKVRDNGHV
RSKAAHIAVGVDMDGIKHVLGIWVQNTEGASFWAHVCAELANRGVQDVLIVCCDGLTGLPDAIEATWPDSLVQTCVVHLIRAANRFVSYTDRKAVSRALK
PIYAAANEEAALTALTTFAESELGRKYPSAVAVFENAWDRFIPFLQFPPALRRVIYTTNAIESLNYQLRKVTKNRSQFPTDDSVVKLLWLAICNIEDKRA
REREKEKGKGKARKATTGRLVEGQITTNWKQALAQLAVAYPDRMNPYL
SVPRDRDGSFTPRLVPKGSRRLGGLDDMIISLYAGGMTIRDIQHHLVSTIGTELSHETISNITDAVLDAVMEWQQRPLEEFYPVVYLDAIRVKVRDNGHV
RSKAAHIAVGVDMDGIKHVLGIWVQNTEGASFWAHVCAELANRGVQDVLIVCCDGLTGLPDAIEATWPDSLVQTCVVHLIRAANRFVSYTDRKAVSRALK
PIYAAANEEAALTALTTFAESELGRKYPSAVAVFENAWDRFIPFLQFPPALRRVIYTTNAIESLNYQLRKVTKNRSQFPTDDSVVKLLWLAICNIEDKRA
REREKEKGKGKARKATTGRLVEGQITTNWKQALAQLAVAYPDRMNPYL
Blast result :
Comments
ISBli19 is 84% aa similar to ISMlu11.
References
1] Sebastien Levesque (2017) Direct submission.
2] DOE Joint Genome Institute (2005) Direct GenBank submission.
2] DOE Joint Genome Institute (2005) Direct GenBank submission.