ISBli10
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017150 | ND | Brevibacterium linens | Brevibacterium linens SMQ-1335 Brevibacterium linens Brevibacterium aurantiacum |
DNA section
IS Length : 1528 bp
Ends
IR Length : 18/24
IRL : TGGAGCGGGACCACGGTGACAGAGCAAATCAGTCCGACCACGTAGGGCGA
IRR : TCAAGCGGTACCAGGGTGAGTGAGGCAGTGGTTAGGCTGCCTCTGTTTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCTACGTGTCAGGC | CTTGAAAAATTCCGCCT | 0 |
DNA sequence
TGGAGCGGGACCACGGTGACAGAGCAAATCAGTCCGACCACGTAGGGCGAGAACCAGGAAGCCAATCAATATGTCGAGTCTCGTTGTGGCCGAAGTAGGC
CAAAATGGGTCCATGAGTAGTTCCGGACCGCGTGCCGGTGGACCGTCCCGTCGAAGGTCGTTCACTCCCGCGCAGAAGCTTGAGTTGTTGACCCAGTACG
AGGACGCCTGCACCGGCAAGGAGGGCGGTGCTTTTCTGCGGGAACAGGGTTTGTATTCCTCGCAGATCGCTGAATGGCGAAAGCTTCGTGATGCCGGTGC
TCTCACCGGAAAGAAGCCCGGGGAAACCATTGGCAAGCTCTCTGCAGAACAGGTCGAGATCGCGCGTTTGCGCCGCCAGCTGGAGGTGAGTGAGGGCCGG
TTGGAACGAACCGAGGCTGCCTTGGGAATCATGGAAAAACTCTCGGCGTTCTTCGAGAACGCCATCAAGGAATCACCGGACGAGCCGAAGTCCAGAAAGA
AATGACCAGCGCCTACCGGCATTTGGTGGAGGCGGCTGTTCCGACGCGGCAGGCCGCGGCCCTGCTCGGCCTCTCACGCACCACGATCTACCGTCAACCT
GCCGCCCCGGTGGACCACGAGCCGGTGGTGCCGCCAAACAAGCTGTGTGCCGCGGAGCGGGCCGAGATCCTGGCGGCACTGAACTCCCCGGAGTTCGTGG
ACCTGGCGCCCCTGCAGGTCTACGCGAAGCTACTCGATGAGGGCATCTACCTGGGCTCGGTCTCCACGTTCTACCGGGTCCTGCAGGAGAACGAGCAGGT
CAAGGAGCGCCGCCGGCTGGCCAAGCACCCGGCCCGGGCCATCCCGGAGCTGGTCGCTACCGCACCTGGTCAGGTGCTCAGCTGGGATATTACGAAGCTG
GCTGGCCCGGTGAAGGGCAAGTACTTCGATTGTTACCTGATGGTGGACATCCATTCGAGGTTCATCGTCGGCGCGCACGTGCACGCCACCGAATCAGGGG
TCCTGGCGATGGAGATGATGAAGGAGATCTTCGGCATCCACGGCATCCCCGAAATCGTCCACGCCGACCGCGGGACCTCGATGACGTCGAAGACCGTTGC
CGGACTGCTCTCGGATCTGGAGGTCACCCGATCCCATTCCAGGCCCCGGGTGAGCAACGACAACCCGTACAGCGAAAGTCTCTTCAAAACCATGAAGTAC
GGGCCAACCTTCCCCGATCGCTTCGCGTCCCTGAGCGACGCGCGGGCCTTCATCAGTGAATTCGTGGATTGGTACAATCACGCTCATCAGCATTCTGGCA
TCGGGTTCCATACTCCAGCCAACGTCCACTATGGCTTCGCCGATAGCGTCGCCGTGAAACGCTCACAGACCTTGGCTGCCGCGCGGGCCAAACACCCCCA
AAGGTTCAGCAAGGCCACCGATCCCAAGATCCTGGCCCTACCCGGACCGGCATGGATCAACCAACCAAAGGAGAGCACCGAAACAGAGGCAGCCTAACCA
CTGCCTCACTCACCCTGGTACCGCTTGA
CAAAATGGGTCCATGAGTAGTTCCGGACCGCGTGCCGGTGGACCGTCCCGTCGAAGGTCGTTCACTCCCGCGCAGAAGCTTGAGTTGTTGACCCAGTACG
AGGACGCCTGCACCGGCAAGGAGGGCGGTGCTTTTCTGCGGGAACAGGGTTTGTATTCCTCGCAGATCGCTGAATGGCGAAAGCTTCGTGATGCCGGTGC
TCTCACCGGAAAGAAGCCCGGGGAAACCATTGGCAAGCTCTCTGCAGAACAGGTCGAGATCGCGCGTTTGCGCCGCCAGCTGGAGGTGAGTGAGGGCCGG
TTGGAACGAACCGAGGCTGCCTTGGGAATCATGGAAAAACTCTCGGCGTTCTTCGAGAACGCCATCAAGGAATCACCGGACGAGCCGAAGTCCAGAAAGA
AATGACCAGCGCCTACCGGCATTTGGTGGAGGCGGCTGTTCCGACGCGGCAGGCCGCGGCCCTGCTCGGCCTCTCACGCACCACGATCTACCGTCAACCT
GCCGCCCCGGTGGACCACGAGCCGGTGGTGCCGCCAAACAAGCTGTGTGCCGCGGAGCGGGCCGAGATCCTGGCGGCACTGAACTCCCCGGAGTTCGTGG
ACCTGGCGCCCCTGCAGGTCTACGCGAAGCTACTCGATGAGGGCATCTACCTGGGCTCGGTCTCCACGTTCTACCGGGTCCTGCAGGAGAACGAGCAGGT
CAAGGAGCGCCGCCGGCTGGCCAAGCACCCGGCCCGGGCCATCCCGGAGCTGGTCGCTACCGCACCTGGTCAGGTGCTCAGCTGGGATATTACGAAGCTG
GCTGGCCCGGTGAAGGGCAAGTACTTCGATTGTTACCTGATGGTGGACATCCATTCGAGGTTCATCGTCGGCGCGCACGTGCACGCCACCGAATCAGGGG
TCCTGGCGATGGAGATGATGAAGGAGATCTTCGGCATCCACGGCATCCCCGAAATCGTCCACGCCGACCGCGGGACCTCGATGACGTCGAAGACCGTTGC
CGGACTGCTCTCGGATCTGGAGGTCACCCGATCCCATTCCAGGCCCCGGGTGAGCAACGACAACCCGTACAGCGAAAGTCTCTTCAAAACCATGAAGTAC
GGGCCAACCTTCCCCGATCGCTTCGCGTCCCTGAGCGACGCGCGGGCCTTCATCAGTGAATTCGTGGATTGGTACAATCACGCTCATCAGCATTCTGGCA
TCGGGTTCCATACTCCAGCCAACGTCCACTATGGCTTCGCCGATAGCGTCGCCGTGAAACGCTCACAGACCTTGGCTGCCGCGCGGGCCAAACACCCCCA
AAGGTTCAGCAAGGCCACCGATCCCAAGATCCTGGCCCTACCCGGACCGGCATGGATCAACCAACCAAAGGAGAGCACCGAAACAGAGGCAGCCTAACCA
CTGCCTCACTCACCCTGGTACCGCTTGA
Recoding section
- Recoding by frameshift
- Frame -1
- Type
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
453 bp | 130 aa | 53 | 505 | + | No |
Description : First part of the transposase
ORF sequence :
MSSSGPRAGGPSRRRSFTPAQKLELLTQYEDACTGKEGGAFLREQGLYSSQIAEWRKLRDAGALTGKKPGETIGKLSAEQVEIARLRRQLEVSEGRLERT
EAALGIMEKLSAFFENAIKESPDEPKSRKK
EAALGIMEKLSAFFENAIKESPDEPKSRKK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1104 bp | 367 aa | 394 | 1497 | + | No |
Description : Second part of the transposase
ORF sequence :
GPVGTNRGCLGNHGKTLGVLRERHQGITGRAEVQKEMTSAYRHLVEAAVPTRQAAALLGLSRTTIYRQPAAPVDHEPVVPPNKLCAAERAEILAALNSPE
FVDLAPLQVYAKLLDEGIYLGSVSTFYRVLQENEQVKERRRLAKHPARAIPELVATAPGQVLSWDITKLAGPVKGKYFDCYLMVDIHSRFIVGAHVHATE
SGVLAMEMMKEIFGIHGIPEIVHADRGTSMTSKTVAGLLSDLEVTRSHSRPRVSNDNPYSESLFKTMKYGPTFPDRFASLSDARAFISEFVDWYNHAHQH
SGIGFHTPANVHYGFADSVAVKRSQTLAAARAKHPQRFSKATDPKILALPGPAWINQPKESTETEAA
FVDLAPLQVYAKLLDEGIYLGSVSTFYRVLQENEQVKERRRLAKHPARAIPELVATAPGQVLSWDITKLAGPVKGKYFDCYLMVDIHSRFIVGAHVHATE
SGVLAMEMMKEIFGIHGIPEIVHADRGTSMTSKTVAGLLSDLEVTRSHSRPRVSNDNPYSESLFKTMKYGPTFPDRFASLSDARAFISEFVDWYNHAHQH
SGIGFHTPANVHYGFADSVAVKRSQTLAAARAKHPQRFSKATDPKILALPGPAWINQPKESTETEAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1445 bp | 461 aa | 53 | 1497 | + | Yes |
Chemistry : DDE
ORF sequence :
MSSSGPRAGGPSRRRSFTPAQKLELLTQYEDACTGKEGGAFLREQGLYSSQIAEWRKLRDAGALTGKKPGETIGKLSAEQVEIARLRRQLEVSEGRLERT
EAALGIMEKTLGVLRERHQGITGRAEVQKEMTSAYRHLVEAAVPTRQAAALLGLSRTTIYRQPAAPVDHEPVVPPNKLCAAERAEILAALNSPEFVDLAP
LQVYAKLLDEGIYLGSVSTFYRVLQENEQVKERRRLAKHPARAIPELVATAPGQVLSWDITKLAGPVKGKYFDCYLMVDIHSRFIVGAHVHATESGVLAM
EMMKEIFGIHGIPEIVHADRGTSMTSKTVAGLLSDLEVTRSHSRPRVSNDNPYSESLFKTMKYGPTFPDRFASLSDARAFISEFVDWYNHAHQHSGIGFH
TPANVHYGFADSVAVKRSQTLAAARAKHPQRFSKATDPKILALPGPAWINQPKESTETEAA
EAALGIMEKTLGVLRERHQGITGRAEVQKEMTSAYRHLVEAAVPTRQAAALLGLSRTTIYRQPAAPVDHEPVVPPNKLCAAERAEILAALNSPEFVDLAP
LQVYAKLLDEGIYLGSVSTFYRVLQENEQVKERRRLAKHPARAIPELVATAPGQVLSWDITKLAGPVKGKYFDCYLMVDIHSRFIVGAHVHATESGVLAM
EMMKEIFGIHGIPEIVHADRGTSMTSKTVAGLLSDLEVTRSHSRPRVSNDNPYSESLFKTMKYGPTFPDRFASLSDARAFISEFVDWYNHAHQHSGIGFH
TPANVHYGFADSVAVKRSQTLAAARAKHPQRFSKATDPKILALPGPAWINQPKESTETEAA
Blast result :
Comments
ISBli10 is 85% aa similar to ISAar46.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.