ISEc76

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_CP019028 ND Escherichia coli
Escherichia coli Ecol_881 plasmid pEC881_1
Escherichia coli plasmid pCss165Kan
Escherichia coli plasmid pETN48
Escherichia coli 6409 plasmid p6409
Escherichia coli Ecol_517 plasmid pEC517_1
Escherichia coli Ecol_AZ146 plasmid pECAZ146_1
Escherichia coli Ecol_AZ155 plasmid pECAZ155_KPC
Escherichia coli AR_0114 plasmid unitig_1
Escherichia coli AR_0137 plasmid tig00001069_pilon
Escherichia coli plasmid pIP1206
Escherichia coli Ecol_224 plasmid pEC224_1
DNA section
IS Length : 1368 bp

Ends


IR Length : 12/13

IRL : gaatGGAAGGGACTTCCCCTGGATATGCACCTGATTAACTCTTGTGCAAT
IRR : ---TATAAGGGCTTCCCCGAACAGTCAACGTCGGTATTTATGGTTTGTGT

Comments : The IR of this IS are sub-terminal with 6nt separating the IRL from the left-hand and and 3nt separating the IRR from the right-hand end, a characteristic of members of the IS1111 group (Partridge and Hall, 2003).

Insertion site


Left flankDirect repeatRight flankDR Length
GTATCGGTTAAAAAACGCCCCTAACGTACAAAAATGTCCGATCTCCAAAC0

DNA sequence

GAATGGAAGGGACTTCCCCTGGATATGCACCTGATTAACTCTTGTGCAATCATGGGGTAAACATAGCCTGGAGAGATTCGTTATGACCATCACTACTATC
GGTATCGATCTTGCTAAAAATGTGTTCGCTGTTCATGGGGTTGACCAAAATGGCAAAACCGTTCTGGTGAAATCCAGAGTAACCCGCGCAGCTCTTCCCG
GGCTGATTGCAAGTTTACCGCCCTGTGTTATCGGGATGGAGGCGTGCTCCGGGGCTTATTACTGGGCAAGATTGTTTCTGCAATATGGTCATGAACCGCG
TCTGATGGCCGCTAAATTTGTATCTCCATACCGCATGGCCGGTAAATCAGGGAAAAATGATGCAGCTGATGCTCAGGCTATCTGCGAAGCGGTTCGTCGC
CCACATATGCGGTTTGTTCCAGTTAAGGACGAGAGCCAGCAGGCGATGCAGTGTCTGCATCGTAACCGACAGGGTTTTATCGAAGAGAAAACAGCAACAT
ATAATCGTCTTCGAGGGTTGATATCAGAATTCGGCGTCATTGCCCCACAAAGTACAGATGCTTTGCGGCACATGGTTTCTGCGCAGAAGAGCTCTTTACC
TCTTCAGGTTCAGCAATGTGTAGATGATTTACTGGAACACGTTGATCGCATTGAAGCTAACATCACTGAATATGACCGAATTTTGTCCCGCATAGCCAAA
ACAGATCACCGCAGTCAGCGGCTGATGAAGCTAAAAGGAGTTGGTCCCACAACTGCCTGTGCTCTGGTTGCCTGTATCGGTAATGCACATGATTTTAAAA
ATGGACGGCAACTGGCGGCCTGGCTGGGGTTGACTCCATCGCAATACAGTAGCGGCGGAAAGTCGAAGTTAGGCAGGATAACAAAAGCCGGTGATTCGTA
TCTGCGAACGCTTCTGGTACAGGGGGCTCGTTCAGTACTGATTGGCGCTGAGAAAAGGACTGACTTATTCAGTCGTTGGGTCTGTTCACTGGTCGAACGC
AGAGGATACTGGCGCGCTGTTGTGGCCATCGCCGCCAAAAATGCAAGGCTGTGCTGGGCATCATTGCATTACGGTGATGATTTCAGGCTGTATTCAGCAA
GCTAAAGCAGGAAGAAACCGTATGACCATCTGATCTGCAACTCGTTGATGATAAAGGGTTAGACCCCGTGAGGTATATCTGATTATTGTACAGGATATAC
GTATCCGCTTAACGAACAAGAGCCTCACGCGCGTCTTTCATCAGGGTCCGAATCGATAGCGATTCATTATGGCCGTTTATAGTACCGCAGTCTCTCCCCT
TTATTTTTAACTGTAGTGCAGACACAAACCATAAATACCGACGTTGACTGTTCGGGGAAGCCCTTATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa831105+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTITTIGIDLAKNVFAVHGVDQNGKTVLVKSRVTRAALPGLIASLPPCVIGMEACSGAYYWARLFLQYGHEPRLMAAKFVSPYRMAGKSGKNDAADAQAI
CEAVRRPHMRFVPVKDESQQAMQCLHRNRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRHMVSAQKSSLPLQVQQCVDDLLEHVDRIEANITEYDRI
LSRIAKTDHRSQRLMKLKGVGPTTACALVACIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAEKRTDLFSRWV
CSLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS

 

Blast result :
Comments
ISEc76 is 97% aa similar to ISSm1.
References
1] Dongsheng Zhou (2017) Direct submission.
2] Stoesser et al,N. (2016) Direct GenBank submission.