ISEc76
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_CP019028 | ND | Escherichia coli | Escherichia coli Ecol_881 plasmid pEC881_1 Escherichia coli plasmid pCss165Kan Escherichia coli plasmid pETN48 Escherichia coli 6409 plasmid p6409 Escherichia coli Ecol_517 plasmid pEC517_1 Escherichia coli Ecol_AZ146 plasmid pECAZ146_1 Escherichia coli Ecol_AZ155 plasmid pECAZ155_KPC Escherichia coli AR_0114 plasmid unitig_1 Escherichia coli AR_0137 plasmid tig00001069_pilon Escherichia coli plasmid pIP1206 Escherichia coli Ecol_224 plasmid pEC224_1 |
DNA section
IS Length : 1368 bp
Ends
IR Length : 12/13
IRL : gaatGGAAGGGACTTCCCCTGGATATGCACCTGATTAACTCTTGTGCAAT
IRR : ---TATAAGGGCTTCCCCGAACAGTCAACGTCGGTATTTATGGTTTGTGT
Comments : The IR of this IS are sub-terminal with 6nt separating the IRL from the left-hand and and 3nt separating the IRR from the right-hand end, a characteristic of members of the IS1111 group (Partridge and Hall, 2003).
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTATCGGTTAAAAAACGCCCCTAAC | GTACAAAAATGTCCGATCTCCAAAC | 0 |
DNA sequence
GAATGGAAGGGACTTCCCCTGGATATGCACCTGATTAACTCTTGTGCAATCATGGGGTAAACATAGCCTGGAGAGATTCGTTATGACCATCACTACTATC
GGTATCGATCTTGCTAAAAATGTGTTCGCTGTTCATGGGGTTGACCAAAATGGCAAAACCGTTCTGGTGAAATCCAGAGTAACCCGCGCAGCTCTTCCCG
GGCTGATTGCAAGTTTACCGCCCTGTGTTATCGGGATGGAGGCGTGCTCCGGGGCTTATTACTGGGCAAGATTGTTTCTGCAATATGGTCATGAACCGCG
TCTGATGGCCGCTAAATTTGTATCTCCATACCGCATGGCCGGTAAATCAGGGAAAAATGATGCAGCTGATGCTCAGGCTATCTGCGAAGCGGTTCGTCGC
CCACATATGCGGTTTGTTCCAGTTAAGGACGAGAGCCAGCAGGCGATGCAGTGTCTGCATCGTAACCGACAGGGTTTTATCGAAGAGAAAACAGCAACAT
ATAATCGTCTTCGAGGGTTGATATCAGAATTCGGCGTCATTGCCCCACAAAGTACAGATGCTTTGCGGCACATGGTTTCTGCGCAGAAGAGCTCTTTACC
TCTTCAGGTTCAGCAATGTGTAGATGATTTACTGGAACACGTTGATCGCATTGAAGCTAACATCACTGAATATGACCGAATTTTGTCCCGCATAGCCAAA
ACAGATCACCGCAGTCAGCGGCTGATGAAGCTAAAAGGAGTTGGTCCCACAACTGCCTGTGCTCTGGTTGCCTGTATCGGTAATGCACATGATTTTAAAA
ATGGACGGCAACTGGCGGCCTGGCTGGGGTTGACTCCATCGCAATACAGTAGCGGCGGAAAGTCGAAGTTAGGCAGGATAACAAAAGCCGGTGATTCGTA
TCTGCGAACGCTTCTGGTACAGGGGGCTCGTTCAGTACTGATTGGCGCTGAGAAAAGGACTGACTTATTCAGTCGTTGGGTCTGTTCACTGGTCGAACGC
AGAGGATACTGGCGCGCTGTTGTGGCCATCGCCGCCAAAAATGCAAGGCTGTGCTGGGCATCATTGCATTACGGTGATGATTTCAGGCTGTATTCAGCAA
GCTAAAGCAGGAAGAAACCGTATGACCATCTGATCTGCAACTCGTTGATGATAAAGGGTTAGACCCCGTGAGGTATATCTGATTATTGTACAGGATATAC
GTATCCGCTTAACGAACAAGAGCCTCACGCGCGTCTTTCATCAGGGTCCGAATCGATAGCGATTCATTATGGCCGTTTATAGTACCGCAGTCTCTCCCCT
TTATTTTTAACTGTAGTGCAGACACAAACCATAAATACCGACGTTGACTGTTCGGGGAAGCCCTTATA
GGTATCGATCTTGCTAAAAATGTGTTCGCTGTTCATGGGGTTGACCAAAATGGCAAAACCGTTCTGGTGAAATCCAGAGTAACCCGCGCAGCTCTTCCCG
GGCTGATTGCAAGTTTACCGCCCTGTGTTATCGGGATGGAGGCGTGCTCCGGGGCTTATTACTGGGCAAGATTGTTTCTGCAATATGGTCATGAACCGCG
TCTGATGGCCGCTAAATTTGTATCTCCATACCGCATGGCCGGTAAATCAGGGAAAAATGATGCAGCTGATGCTCAGGCTATCTGCGAAGCGGTTCGTCGC
CCACATATGCGGTTTGTTCCAGTTAAGGACGAGAGCCAGCAGGCGATGCAGTGTCTGCATCGTAACCGACAGGGTTTTATCGAAGAGAAAACAGCAACAT
ATAATCGTCTTCGAGGGTTGATATCAGAATTCGGCGTCATTGCCCCACAAAGTACAGATGCTTTGCGGCACATGGTTTCTGCGCAGAAGAGCTCTTTACC
TCTTCAGGTTCAGCAATGTGTAGATGATTTACTGGAACACGTTGATCGCATTGAAGCTAACATCACTGAATATGACCGAATTTTGTCCCGCATAGCCAAA
ACAGATCACCGCAGTCAGCGGCTGATGAAGCTAAAAGGAGTTGGTCCCACAACTGCCTGTGCTCTGGTTGCCTGTATCGGTAATGCACATGATTTTAAAA
ATGGACGGCAACTGGCGGCCTGGCTGGGGTTGACTCCATCGCAATACAGTAGCGGCGGAAAGTCGAAGTTAGGCAGGATAACAAAAGCCGGTGATTCGTA
TCTGCGAACGCTTCTGGTACAGGGGGCTCGTTCAGTACTGATTGGCGCTGAGAAAAGGACTGACTTATTCAGTCGTTGGGTCTGTTCACTGGTCGAACGC
AGAGGATACTGGCGCGCTGTTGTGGCCATCGCCGCCAAAAATGCAAGGCTGTGCTGGGCATCATTGCATTACGGTGATGATTTCAGGCTGTATTCAGCAA
GCTAAAGCAGGAAGAAACCGTATGACCATCTGATCTGCAACTCGTTGATGATAAAGGGTTAGACCCCGTGAGGTATATCTGATTATTGTACAGGATATAC
GTATCCGCTTAACGAACAAGAGCCTCACGCGCGTCTTTCATCAGGGTCCGAATCGATAGCGATTCATTATGGCCGTTTATAGTACCGCAGTCTCTCCCCT
TTATTTTTAACTGTAGTGCAGACACAAACCATAAATACCGACGTTGACTGTTCGGGGAAGCCCTTATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 83 | 1105 | + | No |
Chemistry : DEDD
ORF sequence :
MTITTIGIDLAKNVFAVHGVDQNGKTVLVKSRVTRAALPGLIASLPPCVIGMEACSGAYYWARLFLQYGHEPRLMAAKFVSPYRMAGKSGKNDAADAQAI
CEAVRRPHMRFVPVKDESQQAMQCLHRNRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRHMVSAQKSSLPLQVQQCVDDLLEHVDRIEANITEYDRI
LSRIAKTDHRSQRLMKLKGVGPTTACALVACIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAEKRTDLFSRWV
CSLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS
CEAVRRPHMRFVPVKDESQQAMQCLHRNRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRHMVSAQKSSLPLQVQQCVDDLLEHVDRIEANITEYDRI
LSRIAKTDHRSQRLMKLKGVGPTTACALVACIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAEKRTDLFSRWV
CSLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS
Blast result :
Comments
ISEc76 is 97% aa similar to ISSm1.
References
1] Dongsheng Zhou (2017) Direct submission.
2] Stoesser et al,N. (2016) Direct GenBank submission.
2] Stoesser et al,N. (2016) Direct GenBank submission.