ISPa76

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LC091210 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa A2014-70
DNA section
IS Length : 1657 bp

Ends


IR Length : 17/18

IRL : CAGAGTGTGTAAAAACGCACCGGTAAACCCTTGCTATGATTTCCGAGAAT
IRR : CAGAGTGTGTAAAAACACTTTCGCATCTTGGGTGCCTCAGCCCAGTGTTC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTGCTGCCGGCCATCAGCGGAC4

DNA sequence

CAGAGTGTGTAAAAACGCACCGGTAAACCCTTGCTATGATTTCCGAGAATCTCAGCGTATGGGACGCCCATGAAACGGTTTATCCAGGGTGAACACCGAG
GTCAAAGCACCTTACTTCCCGAAAGCCTCGACGACTACGTCAGCGATACCAATCCGGTTCGGGTGGTTGACGTTTTCGTCGATGAACTCGACCTAGCCAC
GCTAGGTTTTGATGGCGTCATTCCAGCCGAAACCGGAAGACCGGCTTACCACCCTTCGATCCTGCTGAAGATCTATATCTACGGCTATCTAAACCGCATT
CAATCGAGCCGGCGTCTTGAGCGAGAAGCTCAGCGCAACGTCGAACTCATGTGGTTAACCGGGCGATTGATGCCCGATTTCAAGACCATCGCCAACTTCC
GAAAAGATAACAGCAAGGCCATTCGCGGCGTCTGCCGCCAGTTCGTTTTGCTCTGCCAGCAGTTGGGGTTGTTTGGCGAAAACTTGGTTGCCATCGACGG
CAGCAAATTCAAGGCAGTGAACAACCGTGACCGCAATTTCACCAGCGCCAAACTGAAGCGGCGTATGGAAGAAATCGAGGCGAGCATCAGCCGTTATTTG
GCTGTGCTCGATGCGGCTGATCGACAGATTCCTAGCGCCTCCGCGCCAGACACTGCCAGCCTGGAAGATAAGATTGCCAAGCTAAAAGCGCATATGAAAG
AGCTTCAAGGGATCGAAACTCAGCTCAACGATTCCCCTGATAAACAGGTTTCGCTGACCGACCCGGATGCCCGTTCGATGATGACGCGCGGCAGCGGTAT
CGTCGGCTACAACGTGCAGACGGCTGTCGATACGCAGCACCACCTGATCGTTGCTCACGAGGTCACCAACAGCGGTTCAGACCGCGACCAACTCAGTTCA
ATGGCGAAGCAGGCTCGTGAAGCCATCGGCGCAGAAACGCTGTCCGTGGTGGCTGACCGAGGCTACTTCAAGGGTGAAGAGATCCTTGCCTGTCACGACG
CAAACATCACGGCCTACGTGCCTAAGCCAATGACTTCAAGCGCCAAGGCTGATGGCCGATTCAATAAAGATGCCTTCGTGTATGACCCGACGAAAAACGA
ATACACCTGCCCGGCGGGAGAGGCACTGATCTGGCGATTCTCCAGCGTTGAGAAAGGCATGAATATGCACTGTTACTGGAGTTCTAAGTGCCAGAGTTGT
GCGCTGAAAACCCAGTGCACACCAAGCACAAATCGTCGAGTAAGGCGCTGGGAGCATGAAGCAGTGCTGGAGGAAATGCAGCGCCGGTTGAACCAAGCAC
CAGAGATGATGCGGGTTCGAAAACGGACTGTTGAGCATCCCTTCGGTACGCTCAAGCAATGGATGGGCGCAACGCACTTCCTGACCCGAAAGCTGAACGG
GGTGAGTGCGGAGATGAGCTTGAATGTGCTCGCCTACAACTTGAAACGGGTGATGAAAATCATCGGCACCGAAGGCCTGTTGAAGGCGATGACGGCGTAA
AAGCCCCAGCTTTTGCTGCTCCAAGAGGTGCCAAAGCGCTTCATAAACGCTCTGACGCGCTATTGGCGCTGATCGCGGCTATTTGCTTGGGAAACCGCCT
CGCCCAGGAACACTGGGCTGAGGCACCCAAGATGCGAAAGTGTTTTTACACACTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1431 bp476 aa701500+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRFIQGEHRGQSTLLPESLDDYVSDTNPVRVVDVFVDELDLATLGFDGVIPAETGRPAYHPSILLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNSKAIRGVCRQFVLLCQQLGLFGENLVAIDGSKFKAVNNRDRNFTSAKLKRRMEEIEASISRYLAVLDAADRQIPSASAPDTASLED
KIAKLKAHMKELQGIETQLNDSPDKQVSLTDPDARSMMTRGSGIVGYNVQTAVDTQHHLIVAHEVTNSGSDRDQLSSMAKQAREAIGAETLSVVADRGYF
KGEEILACHDANITAYVPKPMTSSAKADGRFNKDAFVYDPTKNEYTCPAGEALIWRFSSVEKGMNMHCYWSSKCQSCALKTQCTPSTNRRVRRWEHEAVL
EEMQRRLNQAPEMMRVRKRTVEHPFGTLKQWMGATHFLTRKLNGVSAEMSLNVLAYNLKRVMKIIGTEGLLKAMTA

 

Blast result :
Comments
ISPa76 is 98% aa similar to ISPmo1.
There is an empty site in Pseudomonas aeruginosa NCGM 3025 (LC031883).
References
1] Sally Partridge (2017) Direct submission.
2] Fukuchi,K., Tateishi,Y., Kotake,H. and Ugajin,K. (2015) Direct GenBank submission.