ISPa76
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LC091210 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa A2014-70 |
DNA section
IS Length : 1657 bp
Ends
IR Length : 17/18
IRL : CAGAGTGTGTAAAAACGCACCGGTAAACCCTTGCTATGATTTCCGAGAAT
IRR : CAGAGTGTGTAAAAACACTTTCGCATCTTGGGTGCCTCAGCCCAGTGTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTGCTGCC | GGCC | ATCAGCGGAC | 4 |
DNA sequence
CAGAGTGTGTAAAAACGCACCGGTAAACCCTTGCTATGATTTCCGAGAATCTCAGCGTATGGGACGCCCATGAAACGGTTTATCCAGGGTGAACACCGAG
GTCAAAGCACCTTACTTCCCGAAAGCCTCGACGACTACGTCAGCGATACCAATCCGGTTCGGGTGGTTGACGTTTTCGTCGATGAACTCGACCTAGCCAC
GCTAGGTTTTGATGGCGTCATTCCAGCCGAAACCGGAAGACCGGCTTACCACCCTTCGATCCTGCTGAAGATCTATATCTACGGCTATCTAAACCGCATT
CAATCGAGCCGGCGTCTTGAGCGAGAAGCTCAGCGCAACGTCGAACTCATGTGGTTAACCGGGCGATTGATGCCCGATTTCAAGACCATCGCCAACTTCC
GAAAAGATAACAGCAAGGCCATTCGCGGCGTCTGCCGCCAGTTCGTTTTGCTCTGCCAGCAGTTGGGGTTGTTTGGCGAAAACTTGGTTGCCATCGACGG
CAGCAAATTCAAGGCAGTGAACAACCGTGACCGCAATTTCACCAGCGCCAAACTGAAGCGGCGTATGGAAGAAATCGAGGCGAGCATCAGCCGTTATTTG
GCTGTGCTCGATGCGGCTGATCGACAGATTCCTAGCGCCTCCGCGCCAGACACTGCCAGCCTGGAAGATAAGATTGCCAAGCTAAAAGCGCATATGAAAG
AGCTTCAAGGGATCGAAACTCAGCTCAACGATTCCCCTGATAAACAGGTTTCGCTGACCGACCCGGATGCCCGTTCGATGATGACGCGCGGCAGCGGTAT
CGTCGGCTACAACGTGCAGACGGCTGTCGATACGCAGCACCACCTGATCGTTGCTCACGAGGTCACCAACAGCGGTTCAGACCGCGACCAACTCAGTTCA
ATGGCGAAGCAGGCTCGTGAAGCCATCGGCGCAGAAACGCTGTCCGTGGTGGCTGACCGAGGCTACTTCAAGGGTGAAGAGATCCTTGCCTGTCACGACG
CAAACATCACGGCCTACGTGCCTAAGCCAATGACTTCAAGCGCCAAGGCTGATGGCCGATTCAATAAAGATGCCTTCGTGTATGACCCGACGAAAAACGA
ATACACCTGCCCGGCGGGAGAGGCACTGATCTGGCGATTCTCCAGCGTTGAGAAAGGCATGAATATGCACTGTTACTGGAGTTCTAAGTGCCAGAGTTGT
GCGCTGAAAACCCAGTGCACACCAAGCACAAATCGTCGAGTAAGGCGCTGGGAGCATGAAGCAGTGCTGGAGGAAATGCAGCGCCGGTTGAACCAAGCAC
CAGAGATGATGCGGGTTCGAAAACGGACTGTTGAGCATCCCTTCGGTACGCTCAAGCAATGGATGGGCGCAACGCACTTCCTGACCCGAAAGCTGAACGG
GGTGAGTGCGGAGATGAGCTTGAATGTGCTCGCCTACAACTTGAAACGGGTGATGAAAATCATCGGCACCGAAGGCCTGTTGAAGGCGATGACGGCGTAA
AAGCCCCAGCTTTTGCTGCTCCAAGAGGTGCCAAAGCGCTTCATAAACGCTCTGACGCGCTATTGGCGCTGATCGCGGCTATTTGCTTGGGAAACCGCCT
CGCCCAGGAACACTGGGCTGAGGCACCCAAGATGCGAAAGTGTTTTTACACACTCTG
GTCAAAGCACCTTACTTCCCGAAAGCCTCGACGACTACGTCAGCGATACCAATCCGGTTCGGGTGGTTGACGTTTTCGTCGATGAACTCGACCTAGCCAC
GCTAGGTTTTGATGGCGTCATTCCAGCCGAAACCGGAAGACCGGCTTACCACCCTTCGATCCTGCTGAAGATCTATATCTACGGCTATCTAAACCGCATT
CAATCGAGCCGGCGTCTTGAGCGAGAAGCTCAGCGCAACGTCGAACTCATGTGGTTAACCGGGCGATTGATGCCCGATTTCAAGACCATCGCCAACTTCC
GAAAAGATAACAGCAAGGCCATTCGCGGCGTCTGCCGCCAGTTCGTTTTGCTCTGCCAGCAGTTGGGGTTGTTTGGCGAAAACTTGGTTGCCATCGACGG
CAGCAAATTCAAGGCAGTGAACAACCGTGACCGCAATTTCACCAGCGCCAAACTGAAGCGGCGTATGGAAGAAATCGAGGCGAGCATCAGCCGTTATTTG
GCTGTGCTCGATGCGGCTGATCGACAGATTCCTAGCGCCTCCGCGCCAGACACTGCCAGCCTGGAAGATAAGATTGCCAAGCTAAAAGCGCATATGAAAG
AGCTTCAAGGGATCGAAACTCAGCTCAACGATTCCCCTGATAAACAGGTTTCGCTGACCGACCCGGATGCCCGTTCGATGATGACGCGCGGCAGCGGTAT
CGTCGGCTACAACGTGCAGACGGCTGTCGATACGCAGCACCACCTGATCGTTGCTCACGAGGTCACCAACAGCGGTTCAGACCGCGACCAACTCAGTTCA
ATGGCGAAGCAGGCTCGTGAAGCCATCGGCGCAGAAACGCTGTCCGTGGTGGCTGACCGAGGCTACTTCAAGGGTGAAGAGATCCTTGCCTGTCACGACG
CAAACATCACGGCCTACGTGCCTAAGCCAATGACTTCAAGCGCCAAGGCTGATGGCCGATTCAATAAAGATGCCTTCGTGTATGACCCGACGAAAAACGA
ATACACCTGCCCGGCGGGAGAGGCACTGATCTGGCGATTCTCCAGCGTTGAGAAAGGCATGAATATGCACTGTTACTGGAGTTCTAAGTGCCAGAGTTGT
GCGCTGAAAACCCAGTGCACACCAAGCACAAATCGTCGAGTAAGGCGCTGGGAGCATGAAGCAGTGCTGGAGGAAATGCAGCGCCGGTTGAACCAAGCAC
CAGAGATGATGCGGGTTCGAAAACGGACTGTTGAGCATCCCTTCGGTACGCTCAAGCAATGGATGGGCGCAACGCACTTCCTGACCCGAAAGCTGAACGG
GGTGAGTGCGGAGATGAGCTTGAATGTGCTCGCCTACAACTTGAAACGGGTGATGAAAATCATCGGCACCGAAGGCCTGTTGAAGGCGATGACGGCGTAA
AAGCCCCAGCTTTTGCTGCTCCAAGAGGTGCCAAAGCGCTTCATAAACGCTCTGACGCGCTATTGGCGCTGATCGCGGCTATTTGCTTGGGAAACCGCCT
CGCCCAGGAACACTGGGCTGAGGCACCCAAGATGCGAAAGTGTTTTTACACACTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1431 bp | 476 aa | 70 | 1500 | + | No |
Chemistry : DDE
ORF sequence :
MKRFIQGEHRGQSTLLPESLDDYVSDTNPVRVVDVFVDELDLATLGFDGVIPAETGRPAYHPSILLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNSKAIRGVCRQFVLLCQQLGLFGENLVAIDGSKFKAVNNRDRNFTSAKLKRRMEEIEASISRYLAVLDAADRQIPSASAPDTASLED
KIAKLKAHMKELQGIETQLNDSPDKQVSLTDPDARSMMTRGSGIVGYNVQTAVDTQHHLIVAHEVTNSGSDRDQLSSMAKQAREAIGAETLSVVADRGYF
KGEEILACHDANITAYVPKPMTSSAKADGRFNKDAFVYDPTKNEYTCPAGEALIWRFSSVEKGMNMHCYWSSKCQSCALKTQCTPSTNRRVRRWEHEAVL
EEMQRRLNQAPEMMRVRKRTVEHPFGTLKQWMGATHFLTRKLNGVSAEMSLNVLAYNLKRVMKIIGTEGLLKAMTA
MPDFKTIANFRKDNSKAIRGVCRQFVLLCQQLGLFGENLVAIDGSKFKAVNNRDRNFTSAKLKRRMEEIEASISRYLAVLDAADRQIPSASAPDTASLED
KIAKLKAHMKELQGIETQLNDSPDKQVSLTDPDARSMMTRGSGIVGYNVQTAVDTQHHLIVAHEVTNSGSDRDQLSSMAKQAREAIGAETLSVVADRGYF
KGEEILACHDANITAYVPKPMTSSAKADGRFNKDAFVYDPTKNEYTCPAGEALIWRFSSVEKGMNMHCYWSSKCQSCALKTQCTPSTNRRVRRWEHEAVL
EEMQRRLNQAPEMMRVRKRTVEHPFGTLKQWMGATHFLTRKLNGVSAEMSLNVLAYNLKRVMKIIGTEGLLKAMTA
Blast result :
Comments
ISPa76 is 98% aa similar to ISPmo1.
There is an empty site in Pseudomonas aeruginosa NCGM 3025 (LC031883).
There is an empty site in Pseudomonas aeruginosa NCGM 3025 (LC031883).
References
1] Sally Partridge (2017) Direct submission.
2] Fukuchi,K., Tateishi,Y., Kotake,H. and Ugajin,K. (2015) Direct GenBank submission.
2] Fukuchi,K., Tateishi,Y., Kotake,H. and Ugajin,K. (2015) Direct GenBank submission.