ISVa20
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum | Vibrio anguillarum Vibrio anguillarum serovar O3 CNEVA NB11008 |
DNA section
IS Length : 2397 bp
Ends
IR Length : 17/22
IRL : GTAAGCGCGTCATAAACCCCACATTCTAATCAATATCGGTACGTCCTAAG
IRR : GTAAGCGCCCCATGATCCCACGGGGCGTTTTAGTTTCAGTGTGAGAAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ttgtaagcgccgcg | aagctttc | taacctttcttatgaatc | 8 |
gtgtaaatagctgtggatgagagtt | gcttatgc | cccatatatttacggatcatta | 8 |
ttaagtaattttcata | attaatct | catgacaccaacacactcataa | 8 |
ttccttaac | tataaggt | tgactgattag | 8 |
atgaacttctgtagc | ctttaact | cgatactaatagctttattagc | 8 |
DNA sequence
GTAAGCGCGTCATAAACCCCACATTCTAATCAATATCGGTACGTCCTAAGATCAAATCTCCCAATCTCAAGGAGATCTGAAATGGCAAAACGACGTACCG
ACCAAGAATGGAAAAACCTGTTCGAGCAATACGAATCCAGTCAACTATCCCAGCGTGTTTTCTGCGAGCGCCATAGTCTGAGTCTTTCGACCTTTTATGC
AAAGCGTCAACAATTGCAGTGCTCTAGGCAATCTCAAACTGGTGGCTTTATCAAAGCTGAAGTCGTTGAAAAAACGACTCGCTACCAAGTAACTCAAACA
CCCATCGCCAACATGACATTATTTGTTAATGACGCTGAACTCAGCATTCCACAGGGTACACCTGCCTCGTATCTGGCAGAGTTAATCGGAGCACTATCAT
GAAACGAATGTTGAGCGCCCCGAATGTTTACCTGTATCGGGAGTTCGTGGATTTTAGAAAGTCTATCAATGGCCTGGCGGCGATTATCGAGTCCGAAACC
GATTTGCCGCTCGGCACGGGCGCACTGTTCCTATTTACCAATAAACAACGCGATAAAGTCAAAGTGTTGTATTGGGATAAAACGGGTTTTGCCCTGTGGT
ACAAACGGCTCGAAAAAGCCAAATTCAAATGGCCCACTCAAGAGAAAAAACAGATGTACACCCTGACTCAATTTGACTTAGATAGACTGTTGTCTGGCTT
CACAATAATCGGCCATAAACCGATAAAAATAGACAACTTTACAATGAGTTAACCTCGATAAAAGTCAGTTATACCAAGCCTTATCGTGGTGTTTTTAGTA
TAATCAATGCCATGAAAAAGACGCCCGATATTAACCCAGAAAGCCAAGACATCGCCGAGCTTCAAGCTATGGTGAAAGCGTTGATGTCGGAGAAAAGTGA
GCTGAAAAAGAAGGAAGCACAATGGCAAGAAGAGCGCCAATCCTTAATTGAGCAGTTTAAACTGGCCCTTGACCGTCAGTTCGCTAAACGCTCGGAAGCG
TTAAAGCCGTATAACGAAGTACAGGGTGACCTCTTTAATGAGGCGGAATGTGAAGCGGCGAAAGCGGAAGATGAGGTTATCACCACAACGACGACAGTCA
AACGTCGTGGTAAACGTCAACCGCTTCCTAAAGACTTGCCACGTGAAACACTCGTACTTGACCTAGATGAGCACGACAAACGGTGCTCATGCTGCCAACA
CACTCTGCATAAAATCGGCGAAGACCGCAGTGAAAAGCTGGAGTTCACGCCCGCCGTCCTAAAAGTGTTGGAAGTTGTTCGCCCGAAATACGCCTGTCGT
CAGTGTGAACAACAGGCTGAAAAAAGCCACATTCACCAACAGCCTGCACCGATAAGCATCATCCCCAAAAGCTTCGTTACCGAAAGTCTGCTTGCCAACA
TTATTTTAGGCAAATATCAGTATGCGCTTCCTCTGTATCGTCAGGAAACCTTGTTCACCCAATCAGGTATCGAGTTATCGAGAACGACCATGGCAAGATG
GGTGATACAAGTGAGTGAAAAGTTCAAACCGCTTTATCAGGCACTGAAGACTCACTTACTCGAACAAGTGGTGGTTCAGGCCGATGAAACGCCGCTCAAT
GTGCTCAAGGAAGACAAGCAATGTTATATGTGGTTGTACTGCTCGGGAGCCGACTCCCCTGAAGCTAAACTCCCTGACATGAAAAATATCGTCTTGTTCG
ACTATCAAAACAGCCGCGCGAGAGCGTGTCCCGTGAACTTCTTGGGTGACTACTCAGGCTATCTACAAAGTGATGGTTACGCGGCTTATGATGGATTAAC
CAAGGTCACCAATGTCGGTTGCTTCGCTCACGCACGTCGTAAGTTCATGGAGGCGAAAAAGCTTCAGGGCAAAGGTAAAATAGGTAAAGCAGATGTGGCG
TTAGCCAAAATCCAAAAGCTGTATGCACTGGAGTCGCGATTAAAACTCGCTTCGGTCGAAGAACGTTGGTCTGAAAGACAATCCAGAGCCAAACCGCTGC
TGGATGACCTCTATGACTGGTTAACCACGCAGAAAATCATCAAGTCGAGTCCTCTTGGTAAAGCCATCAAGTACACCTTGAGTCAGTGGCCTAAGCTGAT
ACGCTATGTTGAAGATGGGCATTTATCTATCGACAACAACCGAGCGGAACGCGCAATCAAATCGCTGGTTATTGGCCGAAAAAATTGGTTGTTCGCCAAT
AATCCTAATGGTGCGGATGCTAGTGCGCTGTTGTATAGCATCATCGAGACGGCAAAAGCTAACGGACTGATACTCTATAATTACCTAGTCAAATGTATGA
AAGAGCTGGCAAAGCCAGAGCCTGATATTAACTCTCTTCTTCCTTGGAACTTCTCACACTGAAACTAAAACGCCCCGTGGGATCATGGGGCGCTTAC
ACCAAGAATGGAAAAACCTGTTCGAGCAATACGAATCCAGTCAACTATCCCAGCGTGTTTTCTGCGAGCGCCATAGTCTGAGTCTTTCGACCTTTTATGC
AAAGCGTCAACAATTGCAGTGCTCTAGGCAATCTCAAACTGGTGGCTTTATCAAAGCTGAAGTCGTTGAAAAAACGACTCGCTACCAAGTAACTCAAACA
CCCATCGCCAACATGACATTATTTGTTAATGACGCTGAACTCAGCATTCCACAGGGTACACCTGCCTCGTATCTGGCAGAGTTAATCGGAGCACTATCAT
GAAACGAATGTTGAGCGCCCCGAATGTTTACCTGTATCGGGAGTTCGTGGATTTTAGAAAGTCTATCAATGGCCTGGCGGCGATTATCGAGTCCGAAACC
GATTTGCCGCTCGGCACGGGCGCACTGTTCCTATTTACCAATAAACAACGCGATAAAGTCAAAGTGTTGTATTGGGATAAAACGGGTTTTGCCCTGTGGT
ACAAACGGCTCGAAAAAGCCAAATTCAAATGGCCCACTCAAGAGAAAAAACAGATGTACACCCTGACTCAATTTGACTTAGATAGACTGTTGTCTGGCTT
CACAATAATCGGCCATAAACCGATAAAAATAGACAACTTTACAATGAGTTAACCTCGATAAAAGTCAGTTATACCAAGCCTTATCGTGGTGTTTTTAGTA
TAATCAATGCCATGAAAAAGACGCCCGATATTAACCCAGAAAGCCAAGACATCGCCGAGCTTCAAGCTATGGTGAAAGCGTTGATGTCGGAGAAAAGTGA
GCTGAAAAAGAAGGAAGCACAATGGCAAGAAGAGCGCCAATCCTTAATTGAGCAGTTTAAACTGGCCCTTGACCGTCAGTTCGCTAAACGCTCGGAAGCG
TTAAAGCCGTATAACGAAGTACAGGGTGACCTCTTTAATGAGGCGGAATGTGAAGCGGCGAAAGCGGAAGATGAGGTTATCACCACAACGACGACAGTCA
AACGTCGTGGTAAACGTCAACCGCTTCCTAAAGACTTGCCACGTGAAACACTCGTACTTGACCTAGATGAGCACGACAAACGGTGCTCATGCTGCCAACA
CACTCTGCATAAAATCGGCGAAGACCGCAGTGAAAAGCTGGAGTTCACGCCCGCCGTCCTAAAAGTGTTGGAAGTTGTTCGCCCGAAATACGCCTGTCGT
CAGTGTGAACAACAGGCTGAAAAAAGCCACATTCACCAACAGCCTGCACCGATAAGCATCATCCCCAAAAGCTTCGTTACCGAAAGTCTGCTTGCCAACA
TTATTTTAGGCAAATATCAGTATGCGCTTCCTCTGTATCGTCAGGAAACCTTGTTCACCCAATCAGGTATCGAGTTATCGAGAACGACCATGGCAAGATG
GGTGATACAAGTGAGTGAAAAGTTCAAACCGCTTTATCAGGCACTGAAGACTCACTTACTCGAACAAGTGGTGGTTCAGGCCGATGAAACGCCGCTCAAT
GTGCTCAAGGAAGACAAGCAATGTTATATGTGGTTGTACTGCTCGGGAGCCGACTCCCCTGAAGCTAAACTCCCTGACATGAAAAATATCGTCTTGTTCG
ACTATCAAAACAGCCGCGCGAGAGCGTGTCCCGTGAACTTCTTGGGTGACTACTCAGGCTATCTACAAAGTGATGGTTACGCGGCTTATGATGGATTAAC
CAAGGTCACCAATGTCGGTTGCTTCGCTCACGCACGTCGTAAGTTCATGGAGGCGAAAAAGCTTCAGGGCAAAGGTAAAATAGGTAAAGCAGATGTGGCG
TTAGCCAAAATCCAAAAGCTGTATGCACTGGAGTCGCGATTAAAACTCGCTTCGGTCGAAGAACGTTGGTCTGAAAGACAATCCAGAGCCAAACCGCTGC
TGGATGACCTCTATGACTGGTTAACCACGCAGAAAATCATCAAGTCGAGTCCTCTTGGTAAAGCCATCAAGTACACCTTGAGTCAGTGGCCTAAGCTGAT
ACGCTATGTTGAAGATGGGCATTTATCTATCGACAACAACCGAGCGGAACGCGCAATCAAATCGCTGGTTATTGGCCGAAAAAATTGGTTGTTCGCCAAT
AATCCTAATGGTGCGGATGCTAGTGCGCTGTTGTATAGCATCATCGAGACGGCAAAAGCTAACGGACTGATACTCTATAATTACCTAGTCAAATGTATGA
AAGAGCTGGCAAAGCCAGAGCCTGATATTAACTCTCTTCTTCCTTGGAACTTCTCACACTGAAACTAAAACGCCCCGTGGGATCATGGGGCGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
321 bp | 106 aa | 82 | 402 | + | No |
AG : IS66 TnpA
ORF sequence :
MAKRRTDQEWKNLFEQYESSQLSQRVFCERHSLSLSTFYAKRQQLQCSRQSQTGGFIKAEVVEKTTRYQVTQTPIANMTLFVNDAELSIPQGTPASYLAE
LIGALS
LIGALS
Blast result :88% aa similar to ISVa9 (ORF1)ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
355 bp | 117 aa | 399 | 753 | + | No |
AG : IS66 TnpB
ORF sequence :
MKRMLSAPNVYLYREFVDFRKSINGLAAIIESETDLPLGTGALFLFTNKQRDKVKVLYWDKTGFALWYKRLEKAKFKWPTQEKKQMYTLTQFDLDRLLSG
FTIIGHKPIKIDNFTMS
FTIIGHKPIKIDNFTMS
Blast result :100% aa similar to ISVa9 (ORF2)ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1548 bp | 516 aa | 812 | 2359 | + | No |
Chemistry : DDE
ORF sequence :
MKKTPDINPESQDIAELQAMVKALMSEKSELKKKEAQWQEERQSLIEQFKLALDRQFAKRSEALKPYNEVQGDLFNEAECEAAKAEDEVITTTTTVKRRG
KRQPLPKDLPRETLVLDLDEHDKRCSCCQHTLHKIGEDRSEKLEFTPAVLKVLEVVRPKYACRQCEQQAEKSHIHQQPAPISIIPKSFVTESLLANIILG
KYQYALPLYRQETLFTQSGIELSRTTMARWVIQVSEKFKPLYQALKTHLLEQVVVQADETPLNVLKEDKQCYMWLYCSGADSPEAKLPDMKNIVLFDYQN
SRARACPVNFLGDYSGYLQSDGYAAYDGLTKVTNVGCFAHARRKFMEAKKLQGKGKIGKADVALAKIQKLYALESRLKLASVEERWSERQSRAKPLLDDL
YDWLTTQKIIKSSPLGKAIKYTLSQWPKLIRYVEDGHLSIDNNRAERAIKSLVIGRKNWLFANNPNGADASALLYSIIETAKANGLILYNYLVKCMKELA
KPEPDINSLLPWNFSH
KRQPLPKDLPRETLVLDLDEHDKRCSCCQHTLHKIGEDRSEKLEFTPAVLKVLEVVRPKYACRQCEQQAEKSHIHQQPAPISIIPKSFVTESLLANIILG
KYQYALPLYRQETLFTQSGIELSRTTMARWVIQVSEKFKPLYQALKTHLLEQVVVQADETPLNVLKEDKQCYMWLYCSGADSPEAKLPDMKNIVLFDYQN
SRARACPVNFLGDYSGYLQSDGYAAYDGLTKVTNVGCFAHARRKFMEAKKLQGKGKIGKADVALAKIQKLYALESRLKLASVEERWSERQSRAKPLLDDL
YDWLTTQKIIKSSPLGKAIKYTLSQWPKLIRYVEDGHLSIDNNRAERAIKSLVIGRKNWLFANNPNGADASALLYSIIETAKANGLILYNYLVKCMKELA
KPEPDINSLLPWNFSH
Blast result :
Comments
ISVa20 is 96% aa similar to ISVa9 (ORF3 : transposase).
Vibrio anguillarum, strain CNEVA NB11008 (serovar O3) was isolated from sea bass in France.
Vibrio anguillarum, strain CNEVA NB11008 (serovar O3) was isolated from sea bass in France.
References
1] Holm K.O. (2017) Direct submission to ISfinder