ISVa20

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio anguillarum
Vibrio anguillarum
Vibrio anguillarum serovar O3 CNEVA NB11008
DNA section
IS Length : 2397 bp

Ends


IR Length : 17/22

IRL : GTAAGCGCGTCATAAACCCCACATTCTAATCAATATCGGTACGTCCTAAG
IRR : GTAAGCGCCCCATGATCCCACGGGGCGTTTTAGTTTCAGTGTGAGAAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
ttgtaagcgccgcgaagctttctaacctttcttatgaatc8
gtgtaaatagctgtggatgagagttgcttatgccccatatatttacggatcatta8
ttaagtaattttcataattaatctcatgacaccaacacactcataa8
ttccttaactataaggttgactgattag8
atgaacttctgtagcctttaactcgatactaatagctttattagc8

DNA sequence

GTAAGCGCGTCATAAACCCCACATTCTAATCAATATCGGTACGTCCTAAGATCAAATCTCCCAATCTCAAGGAGATCTGAAATGGCAAAACGACGTACCG
ACCAAGAATGGAAAAACCTGTTCGAGCAATACGAATCCAGTCAACTATCCCAGCGTGTTTTCTGCGAGCGCCATAGTCTGAGTCTTTCGACCTTTTATGC
AAAGCGTCAACAATTGCAGTGCTCTAGGCAATCTCAAACTGGTGGCTTTATCAAAGCTGAAGTCGTTGAAAAAACGACTCGCTACCAAGTAACTCAAACA
CCCATCGCCAACATGACATTATTTGTTAATGACGCTGAACTCAGCATTCCACAGGGTACACCTGCCTCGTATCTGGCAGAGTTAATCGGAGCACTATCAT
GAAACGAATGTTGAGCGCCCCGAATGTTTACCTGTATCGGGAGTTCGTGGATTTTAGAAAGTCTATCAATGGCCTGGCGGCGATTATCGAGTCCGAAACC
GATTTGCCGCTCGGCACGGGCGCACTGTTCCTATTTACCAATAAACAACGCGATAAAGTCAAAGTGTTGTATTGGGATAAAACGGGTTTTGCCCTGTGGT
ACAAACGGCTCGAAAAAGCCAAATTCAAATGGCCCACTCAAGAGAAAAAACAGATGTACACCCTGACTCAATTTGACTTAGATAGACTGTTGTCTGGCTT
CACAATAATCGGCCATAAACCGATAAAAATAGACAACTTTACAATGAGTTAACCTCGATAAAAGTCAGTTATACCAAGCCTTATCGTGGTGTTTTTAGTA
TAATCAATGCCATGAAAAAGACGCCCGATATTAACCCAGAAAGCCAAGACATCGCCGAGCTTCAAGCTATGGTGAAAGCGTTGATGTCGGAGAAAAGTGA
GCTGAAAAAGAAGGAAGCACAATGGCAAGAAGAGCGCCAATCCTTAATTGAGCAGTTTAAACTGGCCCTTGACCGTCAGTTCGCTAAACGCTCGGAAGCG
TTAAAGCCGTATAACGAAGTACAGGGTGACCTCTTTAATGAGGCGGAATGTGAAGCGGCGAAAGCGGAAGATGAGGTTATCACCACAACGACGACAGTCA
AACGTCGTGGTAAACGTCAACCGCTTCCTAAAGACTTGCCACGTGAAACACTCGTACTTGACCTAGATGAGCACGACAAACGGTGCTCATGCTGCCAACA
CACTCTGCATAAAATCGGCGAAGACCGCAGTGAAAAGCTGGAGTTCACGCCCGCCGTCCTAAAAGTGTTGGAAGTTGTTCGCCCGAAATACGCCTGTCGT
CAGTGTGAACAACAGGCTGAAAAAAGCCACATTCACCAACAGCCTGCACCGATAAGCATCATCCCCAAAAGCTTCGTTACCGAAAGTCTGCTTGCCAACA
TTATTTTAGGCAAATATCAGTATGCGCTTCCTCTGTATCGTCAGGAAACCTTGTTCACCCAATCAGGTATCGAGTTATCGAGAACGACCATGGCAAGATG
GGTGATACAAGTGAGTGAAAAGTTCAAACCGCTTTATCAGGCACTGAAGACTCACTTACTCGAACAAGTGGTGGTTCAGGCCGATGAAACGCCGCTCAAT
GTGCTCAAGGAAGACAAGCAATGTTATATGTGGTTGTACTGCTCGGGAGCCGACTCCCCTGAAGCTAAACTCCCTGACATGAAAAATATCGTCTTGTTCG
ACTATCAAAACAGCCGCGCGAGAGCGTGTCCCGTGAACTTCTTGGGTGACTACTCAGGCTATCTACAAAGTGATGGTTACGCGGCTTATGATGGATTAAC
CAAGGTCACCAATGTCGGTTGCTTCGCTCACGCACGTCGTAAGTTCATGGAGGCGAAAAAGCTTCAGGGCAAAGGTAAAATAGGTAAAGCAGATGTGGCG
TTAGCCAAAATCCAAAAGCTGTATGCACTGGAGTCGCGATTAAAACTCGCTTCGGTCGAAGAACGTTGGTCTGAAAGACAATCCAGAGCCAAACCGCTGC
TGGATGACCTCTATGACTGGTTAACCACGCAGAAAATCATCAAGTCGAGTCCTCTTGGTAAAGCCATCAAGTACACCTTGAGTCAGTGGCCTAAGCTGAT
ACGCTATGTTGAAGATGGGCATTTATCTATCGACAACAACCGAGCGGAACGCGCAATCAAATCGCTGGTTATTGGCCGAAAAAATTGGTTGTTCGCCAAT
AATCCTAATGGTGCGGATGCTAGTGCGCTGTTGTATAGCATCATCGAGACGGCAAAAGCTAACGGACTGATACTCTATAATTACCTAGTCAAATGTATGA
AAGAGCTGGCAAAGCCAGAGCCTGATATTAACTCTCTTCTTCCTTGGAACTTCTCACACTGAAACTAAAACGCCCCGTGGGATCATGGGGCGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
321 bp106 aa82402+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MAKRRTDQEWKNLFEQYESSQLSQRVFCERHSLSLSTFYAKRQQLQCSRQSQTGGFIKAEVVEKTTRYQVTQTPIANMTLFVNDAELSIPQGTPASYLAE
LIGALS

 

Blast result :88% aa similar to ISVa9 (ORF1)
ORF 2
LengthBeginEndStrandFusion ORF
355 bp117 aa399753+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MKRMLSAPNVYLYREFVDFRKSINGLAAIIESETDLPLGTGALFLFTNKQRDKVKVLYWDKTGFALWYKRLEKAKFKWPTQEKKQMYTLTQFDLDRLLSG
FTIIGHKPIKIDNFTMS

 

Blast result :100% aa similar to ISVa9 (ORF2)
ORF 3
LengthBeginEndStrandFusion ORF
1548 bp516 aa8122359+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKTPDINPESQDIAELQAMVKALMSEKSELKKKEAQWQEERQSLIEQFKLALDRQFAKRSEALKPYNEVQGDLFNEAECEAAKAEDEVITTTTTVKRRG
KRQPLPKDLPRETLVLDLDEHDKRCSCCQHTLHKIGEDRSEKLEFTPAVLKVLEVVRPKYACRQCEQQAEKSHIHQQPAPISIIPKSFVTESLLANIILG
KYQYALPLYRQETLFTQSGIELSRTTMARWVIQVSEKFKPLYQALKTHLLEQVVVQADETPLNVLKEDKQCYMWLYCSGADSPEAKLPDMKNIVLFDYQN
SRARACPVNFLGDYSGYLQSDGYAAYDGLTKVTNVGCFAHARRKFMEAKKLQGKGKIGKADVALAKIQKLYALESRLKLASVEERWSERQSRAKPLLDDL
YDWLTTQKIIKSSPLGKAIKYTLSQWPKLIRYVEDGHLSIDNNRAERAIKSLVIGRKNWLFANNPNGADASALLYSIIETAKANGLILYNYLVKCMKELA
KPEPDINSLLPWNFSH

 

Blast result :
Comments
ISVa20 is 96% aa similar to ISVa9 (ORF3 : transposase).
Vibrio anguillarum, strain CNEVA NB11008 (serovar O3) was isolated from sea bass in France.
References
1] Holm K.O. (2017) Direct submission to ISfinder