ISPa73
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KC543497 | ND | Pseudomonas aeruginosa | Pseudomonas resinovorans plasmid pCAR1 Pseudomonas stutzeri 273 Pseudomonas aeruginosa PA96 plasmid pOZ176 Pseudomonas putida B6-2 Pseudomonas putida S12 plasmid pTTS12 Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3 Pseudomonas stutzeri CCUG 29243 Pseudomonas putida DOT-T1E plasmid pGRT1 Pseudomonas putida plasmid pCAR1.2 |
DNA section
IS Length : 1352 bp
Ends
IR Length : 27
IRL : GAGGGTGTTTTTAACTTTGTGTAAACGGTCATTTGGCAGGAGACTGCCAG
IRR : GAGGGTGTCCCGGATTATGTGTAAACGGGATTTCTATTAATCCTGCATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTCCTCAGGCC ATCCTGAG | ATCCTTAG CGTACGTTAT | 0 |
DNA sequence
GAGGGTGTTTTTAACTTTGTGTAAACGGTCATTTGGCAGGAGACTGCCAGCCTCAAGGAGTACCCATGACCGTAGTAAAACGCACCAAGCGAGCGAAGCC
CGACCCTGAACTCGTTAAGCTCGCCGACAGCCTGCTGGTCAATTACAAGAAACCGGAAGATTTGATTGGCGAAAACGGCCTGCTCAAGCCAGCTCACCAA
GATGCTGGTCGAGCGTGCGCTGGAAGCCGAGATGACCGAGCACCTGGGCATGGCAAGAGTGGATCGATCTTCAACGCCGGCGGTAATGCCCGTAACGGTC
ACAGCGACAAAACCCTCAAGGGCGATTTCGGCGAACTGCCGCTGGCCATCCCTCGTGACCGCCAGGCGCTGTTCGAGCCGCAGCTGGTGGCCAAGCAGCA
AACCCGCTGGACGGGCTTCGACGACAAGATCATCTCGCTGTACGCCCGCGGCCTGAGCGTACGAGAGATCCAGGGGCACCTGGAGGAGATGTACGGCACC
GAGGTCTCCCCAACCCTCATCTCGACCGTCACGGACGCGGTAAGCGACGAGGTGAAGCTCTGGCAGGGCCGTCCACTCGATCCGCTGTACCCGATCCTTT
ATCTGGACTGCATCCACGTCAAAGTGCGCGATGCCGGCGCGGTGCGGACCAAGGCGGTGTACCTGGCTATCGGGGTCAATATGGACGGGCACAAGGAAGT
GCTGGGGCTGTGGATCGCCCAAACCGAGGGTGCCAAGTTCTGGTTGCAGGTAGTCACCGAGCTGAAGAACCGTGGCGTGCAGGACATTTTTATCGCCTGC
GTGGACGGCCTCAAGGGCTTCCCCGAGGCGATCGAAACGGTCTATCCGAAAGCCTGCGTGCAGTTGTGTATCGTGCACATGGTGCGCAACAGCCTGAACT
TCGTGTCCTGGAAAGCGCGCAAGGAAGTGGCCGCCGATCTGAAGCTGGTCTACACCTCGGCGACGGTCGAACTGGCCGAGCAACGGCTGACGGAGTTTGA
AGAAAAGTGGGGTGGTCAGTACCAGTCAATCGGCCTGTCCTGGCGGCGTAACTGGGCACGGGTTATCCCGTTCTTCGACCATCCGGCCGAGATCCGCAAG
GTGATCTACACCACCAACGCCATCGAATCGATCAACATGAGTTTGCGCAAGGTGATCAAGACCCGGGCCTCGTTCCCAACTGACGAGGCCGTGAGCAAGC
TGTTTTATCTGGCGCTGAACAACATCAGCAAGAAGTGGACGATGCCGATACGGGACTGGAAAGCGGCTCTGAATCGCTTCAGTATCCAGTTCGAAGATCG
ATTGATGCAGGATTAATAGAAATCCCGTTTACACATAATCCGGGACACCCTC
CGACCCTGAACTCGTTAAGCTCGCCGACAGCCTGCTGGTCAATTACAAGAAACCGGAAGATTTGATTGGCGAAAACGGCCTGCTCAAGCCAGCTCACCAA
GATGCTGGTCGAGCGTGCGCTGGAAGCCGAGATGACCGAGCACCTGGGCATGGCAAGAGTGGATCGATCTTCAACGCCGGCGGTAATGCCCGTAACGGTC
ACAGCGACAAAACCCTCAAGGGCGATTTCGGCGAACTGCCGCTGGCCATCCCTCGTGACCGCCAGGCGCTGTTCGAGCCGCAGCTGGTGGCCAAGCAGCA
AACCCGCTGGACGGGCTTCGACGACAAGATCATCTCGCTGTACGCCCGCGGCCTGAGCGTACGAGAGATCCAGGGGCACCTGGAGGAGATGTACGGCACC
GAGGTCTCCCCAACCCTCATCTCGACCGTCACGGACGCGGTAAGCGACGAGGTGAAGCTCTGGCAGGGCCGTCCACTCGATCCGCTGTACCCGATCCTTT
ATCTGGACTGCATCCACGTCAAAGTGCGCGATGCCGGCGCGGTGCGGACCAAGGCGGTGTACCTGGCTATCGGGGTCAATATGGACGGGCACAAGGAAGT
GCTGGGGCTGTGGATCGCCCAAACCGAGGGTGCCAAGTTCTGGTTGCAGGTAGTCACCGAGCTGAAGAACCGTGGCGTGCAGGACATTTTTATCGCCTGC
GTGGACGGCCTCAAGGGCTTCCCCGAGGCGATCGAAACGGTCTATCCGAAAGCCTGCGTGCAGTTGTGTATCGTGCACATGGTGCGCAACAGCCTGAACT
TCGTGTCCTGGAAAGCGCGCAAGGAAGTGGCCGCCGATCTGAAGCTGGTCTACACCTCGGCGACGGTCGAACTGGCCGAGCAACGGCTGACGGAGTTTGA
AGAAAAGTGGGGTGGTCAGTACCAGTCAATCGGCCTGTCCTGGCGGCGTAACTGGGCACGGGTTATCCCGTTCTTCGACCATCCGGCCGAGATCCGCAAG
GTGATCTACACCACCAACGCCATCGAATCGATCAACATGAGTTTGCGCAAGGTGATCAAGACCCGGGCCTCGTTCCCAACTGACGAGGCCGTGAGCAAGC
TGTTTTATCTGGCGCTGAACAACATCAGCAAGAAGTGGACGATGCCGATACGGGACTGGAAAGCGGCTCTGAATCGCTTCAGTATCCAGTTCGAAGATCG
ATTGATGCAGGATTAATAGAAATCCCGTTTACACATAATCCGGGACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 66 | 1316 | + | No |
Chemistry : DDE
ORF sequence :
MTVVKRTKRAKPDPELVKLADSLLVNYKKPEDLIGENGLLKPAHQDAGRACAGSRDDRAPGHGKSGSIFNAGGNARNGHSDKTLKGDFGELPLAIPRDRQ
ALFEPQLVAKQQTRWTGFDDKIISLYARGLSVREIQGHLEEMYGTEVSPTLISTVTDAVSDEVKLWQGRPLDPLYPILYLDCIHVKVRDAGAVRTKAVYL
AIGVNMDGHKEVLGLWIAQTEGAKFWLQVVTELKNRGVQDIFIACVDGLKGFPEAIETVYPKACVQLCIVHMVRNSLNFVSWKARKEVAADLKLVYTSAT
VELAEQRLTEFEEKWGGQYQSIGLSWRRNWARVIPFFDHPAEIRKVIYTTNAIESINMSLRKVIKTRASFPTDEAVSKLFYLALNNISKKWTMPIRDWKA
ALNRFSIQFEDRLMQD
ALFEPQLVAKQQTRWTGFDDKIISLYARGLSVREIQGHLEEMYGTEVSPTLISTVTDAVSDEVKLWQGRPLDPLYPILYLDCIHVKVRDAGAVRTKAVYL
AIGVNMDGHKEVLGLWIAQTEGAKFWLQVVTELKNRGVQDIFIACVDGLKGFPEAIETVYPKACVQLCIVHMVRNSLNFVSWKARKEVAADLKLVYTSAT
VELAEQRLTEFEEKWGGQYQSIGLSWRRNWARVIPFFDHPAEIRKVIYTTNAIESINMSLRKVIKTRASFPTDEAVSKLFYLALNNISKKWTMPIRDWKA
ALNRFSIQFEDRLMQD
Blast result :
Comments
ISPa73 is 82% aa similar to ISXax1.
References
1] Dongsheng Zhou (2017) Direct submission.
2] Xiong,J., Alexander,D.C., Ma,J.H., Deraspe,M., Low,D.E., Jamieson,F.B. and Roy,P.H. (2013) Antimicrob. Agents Chemother. 57 (8), 3775-3782.
2] Xiong,J., Alexander,D.C., Ma,J.H., Deraspe,M., Low,D.E., Jamieson,F.B. and Roy,P.H. (2013) Antimicrob. Agents Chemother. 57 (8), 3775-3782.