ISHahy3
- Family IS3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002304 | ND | Halanaerobium hydrogeniformans | Halanaerobium hydrogeniformans |
DNA section
IS Length : 1360 bp
Ends
IR Length : 9/16
IRL : TGTGACCCCCCCTAAATATATTGGACAGATACCAATTTAACATCTTATAA
IRR : TGAGCTAGCCCCTCTAATCTTGGACAAACTTTAATATGATTTGTTAAACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTGTCTTAGTCCTTATATTCTTAAA | AAAG | ACTTTAATATAATTTATTAAAAAGCA | 4 |
AAATAGTTTTAAGAAGGTTGTTGCGCCCTC | AAGGCTTATATAGTAATATAAAAGATAATA | 0 |
DNA sequence
TGTGACCCCCCCTAAATATATTGGACAGATACCAATTTAACATCTTATAATAATTACAGGGGGTAAAAGCAAATGCCTAAAAGTTATGATCCTGAAGAAA
AAATGGAAATTGTTCTTCGAGCTATCAAAGGTGAAAAAATATCTGATCTTGCTGATGAATATAGTGTCAGCCGTAATTCCATCTACCTATGGAAAAAAGA
ATTCTTAAACGGAGGTATGAGTAAACTCAGTGGTGAATCTGCTACTGAACAGGAAGCTAAACTTAAGAAAAAAGACGAACAAATTAAAGAGATGGAAAAA
ATTATTGGCCAACAGAAAGTCCAGATGGAAATCCTTAAAAAAAAGCCCTGGCAGAACTAAATACTGTCGATAAAATCAAGATAATTAATCAGCTTAAATC
AGAATATACTGTAGCAGAACTATGCCGAACTTTTGATATAGCCAGGAGCACCTATTATTACCGTCAGAACAATGATCAAAAAGAGAAAGATACTAATACT
GAAGATCAACTTTACACTGGTCATCCAGCTTATGATAAAGATGGTAATTTAGTTCCAGAAAAAGAGGTTGTTAAATTGGTTAAAAAGTACTGTGATGAGT
CTCCTCATCTGGGCTATAGAATGGTAACTGATTACTTGAATTATACAGAAAATCTAAAAGTTAATCATAAGCGTATTTACCGTATAATGAAAGTCTTAGA
TCTACTACAGGATAAGAGAGTTCCAAAACCTAAAAATTATCAATTAAAACAAAAACATGAACTCACTGGACCTGACCAGCTCTGGGAGATGGATATGGTC
CAGATGTACATAGATAACAGTGGCCAGTGGGTATATATGTTTGATATTATTGATGTATTTACCAGAGAGATTGTAGGTCATCATGAAGGATTAAGATGCC
GCACAAAAGAAGCTCTTAAAGCCCTTGAAAAGGCAATAGAAAATCGGAATACTGATAATCTAATATTAAGAACTGATAATGGTACCCAGTTTAGAAGTCG
AGAGTTTCAGACCAGGATTAGAGAGCTTGATATATCTCATGAAAGAACAATGGTAAACACACCAGAAGAAAACGCCCATATTGAGAGCTTTCACGGCACA
TTAAAAAGAGCTGAAGTATATCAAAAACATTACCGCAGCATAACCCACTGCAGGAATTCTATTGCTAAATTTGTTGATAAATACAACAATAGGAGACCAC
ATTCATCTGTTGGTAAAATACCACCAGCAGTTTATCATAAAAATGTTCTTAACAACTTAGTTTCAGGAATTAGATTTGCTGCATAAGCAGTTAATTTATT
GAAAAAACTATGTTTAACAAATCATATTAAAGTTTGTCCAAGATTAGAGGGGCTAGCTCA
AAATGGAAATTGTTCTTCGAGCTATCAAAGGTGAAAAAATATCTGATCTTGCTGATGAATATAGTGTCAGCCGTAATTCCATCTACCTATGGAAAAAAGA
ATTCTTAAACGGAGGTATGAGTAAACTCAGTGGTGAATCTGCTACTGAACAGGAAGCTAAACTTAAGAAAAAAGACGAACAAATTAAAGAGATGGAAAAA
ATTATTGGCCAACAGAAAGTCCAGATGGAAATCCTTAAAAAAAAGCCCTGGCAGAACTAAATACTGTCGATAAAATCAAGATAATTAATCAGCTTAAATC
AGAATATACTGTAGCAGAACTATGCCGAACTTTTGATATAGCCAGGAGCACCTATTATTACCGTCAGAACAATGATCAAAAAGAGAAAGATACTAATACT
GAAGATCAACTTTACACTGGTCATCCAGCTTATGATAAAGATGGTAATTTAGTTCCAGAAAAAGAGGTTGTTAAATTGGTTAAAAAGTACTGTGATGAGT
CTCCTCATCTGGGCTATAGAATGGTAACTGATTACTTGAATTATACAGAAAATCTAAAAGTTAATCATAAGCGTATTTACCGTATAATGAAAGTCTTAGA
TCTACTACAGGATAAGAGAGTTCCAAAACCTAAAAATTATCAATTAAAACAAAAACATGAACTCACTGGACCTGACCAGCTCTGGGAGATGGATATGGTC
CAGATGTACATAGATAACAGTGGCCAGTGGGTATATATGTTTGATATTATTGATGTATTTACCAGAGAGATTGTAGGTCATCATGAAGGATTAAGATGCC
GCACAAAAGAAGCTCTTAAAGCCCTTGAAAAGGCAATAGAAAATCGGAATACTGATAATCTAATATTAAGAACTGATAATGGTACCCAGTTTAGAAGTCG
AGAGTTTCAGACCAGGATTAGAGAGCTTGATATATCTCATGAAAGAACAATGGTAAACACACCAGAAGAAAACGCCCATATTGAGAGCTTTCACGGCACA
TTAAAAAGAGCTGAAGTATATCAAAAACATTACCGCAGCATAACCCACTGCAGGAATTCTATTGCTAAATTTGTTGATAAATACAACAATAGGAGACCAC
ATTCATCTGTTGGTAAAATACCACCAGCAGTTTATCATAAAAATGTTCTTAACAACTTAGTTTCAGGAATTAGATTTGCTGCATAAGCAGTTAATTTATT
GAAAAAACTATGTTTAACAAATCATATTAAAGTTTGTCCAAGATTAGAGGGGCTAGCTCA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
288 bp | 95 aa | 73 | 360 | + | No |
Description : First part of the transposase
ORF sequence :
MPKSYDPEEKMEIVLRAIKGEKISDLADEYSVSRNSIYLWKKEFLNGGMSKLSGESATEQEAKLKKKDEQIKEMEKIIGQQKVQMEILKKKPWQN
Blast result :Comments : OrfAORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 339 | 1286 | + | No |
Description : Second part of the transposase
ORF sequence :
KKALAELNTVDKIKIINQLKSEYTVAELCRTFDIARSTYYYRQNNDQKEKDTNTEDQLYTGHPAYDKDGNLVPEKEVVKLVKKYCDESPHLGYRMVTDYL
NYTENLKVNHKRIYRIMKVLDLLQDKRVPKPKNYQLKQKHELTGPDQLWEMDMVQMYIDNSGQWVYMFDIIDVFTREIVGHHEGLRCRTKEALKALEKAI
ENRNTDNLILRTDNGTQFRSREFQTRIRELDISHERTMVNTPEENAHIESFHGTLKRAEVYQKHYRSITHCRNSIAKFVDKYNNRRPHSSVGKIPPAVYH
KNVLNNLVSGIRFAA
NYTENLKVNHKRIYRIMKVLDLLQDKRVPKPKNYQLKQKHELTGPDQLWEMDMVQMYIDNSGQWVYMFDIIDVFTREIVGHHEGLRCRTKEALKALEKAI
ENRNTDNLILRTDNGTQFRSREFQTRIRELDISHERTMVNTPEENAHIESFHGTLKRAEVYQKHYRSITHCRNSIAKFVDKYNNRRPHSSVGKIPPAVYH
KNVLNNLVSGIRFAA
Blast result :Comments : OrfBORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1214 bp | 404 aa | 73 | 1286 | + | Yes |
Chemistry : DDE
ORF sequence :
MPKSYDPEEKMEIVLRAIKGEKISDLADEYSVSRNSIYLWKKEFLNGGMSKLSGESATEQEAKLKKKDEQIKEMEKIIGQQKVQMEILKKKALAELNTVD
KIKIINQLKSEYTVAELCRTFDIARSTYYYRQNNDQKEKDTNTEDQLYTGHPAYDKDGNLVPEKEVVKLVKKYCDESPHLGYRMVTDYLNYTENLKVNHK
RIYRIMKVLDLLQDKRVPKPKNYQLKQKHELTGPDQLWEMDMVQMYIDNSGQWVYMFDIIDVFTREIVGHHEGLRCRTKEALKALEKAIENRNTDNLILR
TDNGTQFRSREFQTRIRELDISHERTMVNTPEENAHIESFHGTLKRAEVYQKHYRSITHCRNSIAKFVDKYNNRRPHSSVGKIPPAVYHKNVLNNLVSGI
RFAA
KIKIINQLKSEYTVAELCRTFDIARSTYYYRQNNDQKEKDTNTEDQLYTGHPAYDKDGNLVPEKEVVKLVKKYCDESPHLGYRMVTDYLNYTENLKVNHK
RIYRIMKVLDLLQDKRVPKPKNYQLKQKHELTGPDQLWEMDMVQMYIDNSGQWVYMFDIIDVFTREIVGHHEGLRCRTKEALKALEKAIENRNTDNLILR
TDNGTQFRSREFQTRIRELDISHERTMVNTPEENAHIESFHGTLKRAEVYQKHYRSITHCRNSIAKFVDKYNNRRPHSSVGKIPPAVYHKNVLNNLVSGI
RFAA
Blast result :
Comments
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Frank R. (2017) Direct submission to ISfinder
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683