ISAba42

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISAba39
Accession numberTranspositionOriginHost
ND Acinetobacter baumannii
Acinetobacter baumannii Ab825
DNA section
IS Length : 1320 bp

Ends


IR Length : 24/28

IRL : GAGACTGTAAATTAAATTGTGTAATTGCCTGAATTTGCTATGTTCATATT
IRR : GAGCCTGTAAATAATTTTGTGTAATTGCTTTTCATAAATTTAAAGGTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
accgagatggTGCaggaactgcttataa8
tcaatgagcactacgccacggagtgcat8
TCTATTCAATTGTTTTTGGCAACCCAAT8

DNA sequence

GAGACTGTAAATTAAATTGTGTAATTGCCTGAATTTGCTATGTTCATATTCACAACGGAGTCAGGCAACATGATGAACGAACAAAAACTAAAAGACCTTG
CAGCAGAATTTGCTAAAGGAATCAAAACAGAAGACGATCTCAATCAATTCACCCGATTGTTGACTAAACTCACTGTTGAAACGGCTCTCAATGCCGAACT
TACCGAACATCTCGGACATGAAAAGAATGCTCGTAAGAACGGTTCAAATGCTCGTAACGGTTATTCCAGTAAGACCGTGCTGAGCGATGATGGTGAGATT
GAGATCACCACACCACGAGATCGTGATGGCACATTTGAGCCACAGCTAATTAAAAAGAATCAGACTCGTATCACGCAAATGGATAACCAAATTCTATCCC
TTTATGCCAAAGGCATGACTACCCGTGAAATCGTGGCTACTTTCAAAGAAATGTACGATGCTGATGTATCGCCAACGCTTATTTCCAAGGTGACTGATGC
TGTTAAGGAGCAAGTCGCTGAATGGCAAAACCGTCCGCTGGATGCACTCTATCCCATCGTCTATATGGACTGTATTGTAGTTAAAGTCCGTCATAATGGC
AGTGTTATCAACAAGGCTGTATTCCTTGCCTTAGGCATTAATCTTGATGGACAGAAAGAACTGCTCGGCATGTGGATGGCTGAGAATGAAGGTGCAAAGT
TCTGGCTGAATGTCCTGACTGAGCTTAAAAACCGAGGGTTGCAGGATATTCTGATCGCCTGTGTGGATGGACTAAAAGGCTTTCCTGATGCCATTAACAG
CGTATACCCGCAAACCCATATCCAGCTGTGCATTATCCATATGCTGCGTAACAGCTTGAAATACGTATCATGGAAAGATTACAAGGCCGTCACTCAGGAT
TTAAAAACCGTTTATCAGTCACCTACTGAAGAGGCAGCCTTGATGGCCTTGGATCAATTCGCCCAAACATGGGATGACAAGTACCCACAGATCAGCAAAA
GCTGGCGTACACACTGGGAGAATCTAAATACCTTCTTTGCTTATCCAGCCGAGATACGCAAAGCCATCTATACCACCAATGCGATCGAATCATTAAACAG
CGTAATACGTCAGGCGATCAAAAAGCGTAAAGTCTTTCCAACGGATGATTCTGTACGTAAAGTGATTTACCTGGCAATTGATGCAGCGTCTAAAAAGTGG
AATATGCCTATTCGCGACTGGCGTTTAGCCATGAGCCGCTTTATTATTGAATTCGGTGACCGCTTAAGCAATCACCTTTAAATTTATGAAAAGCAATTAC
ACAAAATTATTTACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1212 bp403 aa701281+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMNEQKLKDLAAEFAKGIKTEDDLNQFTRLLTKLTVETALNAELTEHLGHEKNARKNGSNARNGYSSKTVLSDDGEIEITTPRDRDGTFEPQLIKKNQTR
ITQMDNQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRPLDALYPIVYMDCIVVKVRHNGSVINKAVFLALGINLDGQKELLG
MWMAENEGAKFWLNVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMLRNSLKYVSWKDYKAVTQDLKTVYQSPTEEAALMALDQFAQT
WDDKYPQISKSWRTHWENLNTFFAYPAEIRKAIYTTNAIESLNSVIRQAIKKRKVFPTDDSVRKVIYLAIDAASKKWNMPIRDWRLAMSRFIIEFGDRLS
NHL

 

Blast result :
Comments
ISAba42 is 95% aa similar to ISEc39.
References
1] Repizo GD. (2017) Direct submission to ISfinder
2] Mussi MA, Limansky AS, Viale AM. (2005) Antimicrob Agents Chemother. Apr;49(4):1432-40.
3] Ramirez MS (2018) Direct submission.