ISAlba3
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| MEMJ01000011 | ND | Alphaproteobacteria bacterium | Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13 |
DNA section
IS Length : 1120 bp
Ends
IR Length : 28/32
IRL : CCTGCGTATCCGGTTGTCACATAATGATGGTTGAGCTAAAGTGCATTGAG
IRR : CTTGCGTATCCGGTTGTCACATAATTGAGGTTTCGTCGTTGATTGTGGGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGCGAACCAG | GATTATTT | GTTCATTGGA | 8 |
DNA sequence
CCTGCGTATCCGGTTGTCACATAATGATGGTTGAGCTAAAGTGCATTGAGGGGAAATGCGACGATGCCAAATGTAGCTCAAGATCAACAATCAGCGATCA
CAAGCGCGCCTCTTGAGTGCCCAATAAATCTTTTAGATTTCCAGAAGATGTTTCCAGATGAGGCCGCATGTCTTCGATATTTGGAACAGATGCGTTGGCC
AGGCGGTTTTGTCTGCGAGAAGTGCTCTCAATTAAGCGAGCCATTTAGAGTGAGCCTCCGCCCACGAGTGCTTAAATGCAGATCTTGCTATTATGAATCA
TCGGTTACTGCTGGTACAGTTATGCACCGCAGCAAAACCAGTATGCTTGTATGGTTTTGGGCTGCTTATCTTGTTTCAACGCAAACCCCTGGAATATCGG
CAATGGAGCTTCAGAAAAAATTGGGCATTGCTCGCTATGAAACGGCATTTCAGATTTTACACAAATTAAGAGGTGCGATGGTACGCCCATGCCGCGATAA
GATCGGCACTGAGTGGCCTATAGAATTGGACATCATTTTCATTGGAGGCAAGACGAGAAGCGGTATTCAGGGCAAAACGAATCAAGCGCCAGTAATCATT
GCAGTGGAAATTCGTCGTCGAGAAGTTCGCGATCCCAAGACCAGAAAGGTAGTTAAACGCGCTATTGCTGGCCGCCTAAGGGTGCAAAAACTACCGAATA
AAAAAGCTGTCTCTGTTGATCAATTTACAAGAAATTGCATCGTGCCTGGTGCTGCCATTATTAGTGATGATGGTACTGAATTCACAAACCTAAGCAATTT
GGGCTTTGACCATCAACCAGTTCCAATGCGCGGAGACAGAGTCAAAATGGATAGCACATTGCCCATGGTCAGCTTAGTCACAGCCAATTTGAAAACATGG
ATTGACGGCACATTCCATGGTGTTCGAAAAAAACATTTACAAGCCTATCTGGATGAGTTCATGTTTAGATTCAATCGTCGTTTCTATCGTTCGGTATCAT
TCCGTTCTTTGCTAGGCATAGGAACGCTTAATACGGGCATTACCTACAAAGAGGTCTATGCTGTTTTGGACCCCACAATCAACGACGAAACCTCAATTAT
GTGACAACCGGATACGCAAG
CAAGCGCGCCTCTTGAGTGCCCAATAAATCTTTTAGATTTCCAGAAGATGTTTCCAGATGAGGCCGCATGTCTTCGATATTTGGAACAGATGCGTTGGCC
AGGCGGTTTTGTCTGCGAGAAGTGCTCTCAATTAAGCGAGCCATTTAGAGTGAGCCTCCGCCCACGAGTGCTTAAATGCAGATCTTGCTATTATGAATCA
TCGGTTACTGCTGGTACAGTTATGCACCGCAGCAAAACCAGTATGCTTGTATGGTTTTGGGCTGCTTATCTTGTTTCAACGCAAACCCCTGGAATATCGG
CAATGGAGCTTCAGAAAAAATTGGGCATTGCTCGCTATGAAACGGCATTTCAGATTTTACACAAATTAAGAGGTGCGATGGTACGCCCATGCCGCGATAA
GATCGGCACTGAGTGGCCTATAGAATTGGACATCATTTTCATTGGAGGCAAGACGAGAAGCGGTATTCAGGGCAAAACGAATCAAGCGCCAGTAATCATT
GCAGTGGAAATTCGTCGTCGAGAAGTTCGCGATCCCAAGACCAGAAAGGTAGTTAAACGCGCTATTGCTGGCCGCCTAAGGGTGCAAAAACTACCGAATA
AAAAAGCTGTCTCTGTTGATCAATTTACAAGAAATTGCATCGTGCCTGGTGCTGCCATTATTAGTGATGATGGTACTGAATTCACAAACCTAAGCAATTT
GGGCTTTGACCATCAACCAGTTCCAATGCGCGGAGACAGAGTCAAAATGGATAGCACATTGCCCATGGTCAGCTTAGTCACAGCCAATTTGAAAACATGG
ATTGACGGCACATTCCATGGTGTTCGAAAAAAACATTTACAAGCCTATCTGGATGAGTTCATGTTTAGATTCAATCGTCGTTTCTATCGTTCGGTATCAT
TCCGTTCTTTGCTAGGCATAGGAACGCTTAATACGGGCATTACCTACAAAGAGGTCTATGCTGTTTTGGACCCCACAATCAACGACGAAACCTCAATTAT
GTGACAACCGGATACGCAAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1041 bp | 346 aa | 64 | 1104 | + | No |
Chemistry : DDE
ORF sequence :
MPNVAQDQQSAITSAPLECPINLLDFQKMFPDEAACLRYLEQMRWPGGFVCEKCSQLSEPFRVSLRPRVLKCRSCYYESSVTAGTVMHRSKTSMLVWFWA
AYLVSTQTPGISAMELQKKLGIARYETAFQILHKLRGAMVRPCRDKIGTEWPIELDIIFIGGKTRSGIQGKTNQAPVIIAVEIRRREVRDPKTRKVVKRA
IAGRLRVQKLPNKKAVSVDQFTRNCIVPGAAIISDDGTEFTNLSNLGFDHQPVPMRGDRVKMDSTLPMVSLVTANLKTWIDGTFHGVRKKHLQAYLDEFM
FRFNRRFYRSVSFRSLLGIGTLNTGITYKEVYAVLDPTINDETSIM
AYLVSTQTPGISAMELQKKLGIARYETAFQILHKLRGAMVRPCRDKIGTEWPIELDIIFIGGKTRSGIQGKTNQAPVIIAVEIRRREVRDPKTRKVVKRA
IAGRLRVQKLPNKKAVSVDQFTRNCIVPGAAIISDDGTEFTNLSNLGFDHQPVPMRGDRVKMDSTLPMVSLVTANLKTWIDGTFHGVRKKHLQAYLDEFM
FRFNRRFYRSVSFRSLLGIGTLNTGITYKEVYAVLDPTINDETSIM
Blast result :
Comments
ISAlba3 is 66% aa similar to ISCARN100.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.