ISGalb1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| MNXH01000080 | ND | Gallionellaceae bacterium | Gallionellaceae bacterium CG1_02_60_948 |
DNA section
IS Length : 1112 bp
Ends
IR Length : 35/40
IRL : CGTGCTTATCCGGTTGTCACCCAAACCCACTACCGGTAGTATGTTGAGCA
IRR : CGTGCTTATCCGGTTAGCACCCAAGATCACTACCGGTAGTGGGTTTTGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCTCCTGATAAACCTCGATG | GNNNN | 0 |
DNA sequence
CGTGCTTATCCGGTTGTCACCCAAACCCACTACCGGTAGTATGTTGAGCATCTGCGTTATCTTGGGGCGACCATGGTTATTGACGTGCTTGAGCGTGGCG
ATCTGCCGTTTCCGCGCTCGCTGCCGGAGTTCCAGCGCCTCTTCCATGATGAGGCGGCATGCGCGGCTTACCTTGAGCGCGCTCGATGGGGCGACGGGTT
CATCTGTCCTTGTTGCGAAACGTCCGGCGATCCCTATCGTTTCGTCAATCGCCCAACCGTTTTGCGATGTCGCCACTGCCAGCACAACAGCTACCTCACG
GCTGGCACCGTTATGGAACGCACGCACACGCCGCTCTCGGTGTGGTTCTGGGCGGCCTACCTGGTCGCCAGCCAGACGCCTGGGATGTCGGCCGTCCAGT
TCCAGCGGCAACTCGGACTGCCGCGTTACGAGACTGCTTTCCAGATTCTTCACAAACTGCGGGCCGGCATGGTGCGTCCCGACCAAGATCGGATTGGTAG
CAACCCCGGAGAGCACGTCGAGGCCGATGAAACATACGTCGGAGGCCGTACTCGCGGCAAGGGCCGAGGCGTTCACGACATGGTTCTCGTTGCTGGTGCG
GTCGAGGTTAAACAGCGCAAGCCCGGTGGCAGCCTCAACAAGCGGAGGACTGGGCGGTACGCCGGACGTGTTCGGCTCGCAGTGGTGCCAGACCGAAGTG
CCAAATCGTTGGGTGGCTTCATCGAGCGCGTCGTTATGCCAGGCGCTACCATTATTACCGATGACTGGAGCGGCTACGCGACGCTTGAAAAGCAAGGGTA
TCTTCATACCGCCGTTGCGGAACGTGGCAACATACAAGTTGCCGAGACTTTCTTGCCCATTATTCATCTCGTGTTCTCCAATCTCAAAACATGGCTACGT
GGCATTCACCACGGCGTTAGCCCGCAACACTTGCAAGCCTATCTCAACGAATTCACGTTCCGCTTCAATCGCCGCTTCTACCCATTCAACGCTTTCCGCT
CGCTGCTTGGCATTGCTGGCGATGTCACTGCGCCGACCTATGCCGAGCTTTATGCAAAAAAAATCAAAACCCACTACCGGTAGTGATCTTGGGTGCTAAC
CGGATAAGCACG
ATCTGCCGTTTCCGCGCTCGCTGCCGGAGTTCCAGCGCCTCTTCCATGATGAGGCGGCATGCGCGGCTTACCTTGAGCGCGCTCGATGGGGCGACGGGTT
CATCTGTCCTTGTTGCGAAACGTCCGGCGATCCCTATCGTTTCGTCAATCGCCCAACCGTTTTGCGATGTCGCCACTGCCAGCACAACAGCTACCTCACG
GCTGGCACCGTTATGGAACGCACGCACACGCCGCTCTCGGTGTGGTTCTGGGCGGCCTACCTGGTCGCCAGCCAGACGCCTGGGATGTCGGCCGTCCAGT
TCCAGCGGCAACTCGGACTGCCGCGTTACGAGACTGCTTTCCAGATTCTTCACAAACTGCGGGCCGGCATGGTGCGTCCCGACCAAGATCGGATTGGTAG
CAACCCCGGAGAGCACGTCGAGGCCGATGAAACATACGTCGGAGGCCGTACTCGCGGCAAGGGCCGAGGCGTTCACGACATGGTTCTCGTTGCTGGTGCG
GTCGAGGTTAAACAGCGCAAGCCCGGTGGCAGCCTCAACAAGCGGAGGACTGGGCGGTACGCCGGACGTGTTCGGCTCGCAGTGGTGCCAGACCGAAGTG
CCAAATCGTTGGGTGGCTTCATCGAGCGCGTCGTTATGCCAGGCGCTACCATTATTACCGATGACTGGAGCGGCTACGCGACGCTTGAAAAGCAAGGGTA
TCTTCATACCGCCGTTGCGGAACGTGGCAACATACAAGTTGCCGAGACTTTCTTGCCCATTATTCATCTCGTGTTCTCCAATCTCAAAACATGGCTACGT
GGCATTCACCACGGCGTTAGCCCGCAACACTTGCAAGCCTATCTCAACGAATTCACGTTCCGCTTCAATCGCCGCTTCTACCCATTCAACGCTTTCCGCT
CGCTGCTTGGCATTGCTGGCGATGTCACTGCGCCGACCTATGCCGAGCTTTATGCAAAAAAAATCAAAACCCACTACCGGTAGTGATCTTGGGTGCTAAC
CGGATAAGCACG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1005 bp | 334 aa | 79 | 1083 | + | No |
Chemistry : DDE
ORF sequence :
MDVLERGDLPFPRSLPEFQRLFHDEAACAAYLERARWGDGFICPCCETSGDPYRFVNRPTVLRCRHCQHNSYLTAGTVMERTHTPLSVWFWAAYLVASQT
PGMSAVQFQRQLGLPRYETAFQILHKLRAGMVRPDQDRIGSNPGEHVEADETYVGGRTRGKGRGVHDMVLVAGAVEVKQRKPGGSLNKRRTGRYAGRVRL
AVVPDRSAKSLGGFIERVVMPGATIITDDWSGYATLEKQGYLHTAVAERGNIQVAETFLPIIHLVFSNLKTWLRGIHHGVSPQHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDVTAPTYAELYAKKIKTHYR
PGMSAVQFQRQLGLPRYETAFQILHKLRAGMVRPDQDRIGSNPGEHVEADETYVGGRTRGKGRGVHDMVLVAGAVEVKQRKPGGSLNKRRTGRYAGRVRL
AVVPDRSAKSLGGFIERVVMPGATIITDDWSGYATLEKQGYLHTAVAERGNIQVAETFLPIIHLVFSNLKTWLRGIHHGVSPQHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDVTAPTYAELYAKKIKTHYR
Blast result :
Comments
ISGalb1 is 90% aa similar to ISCARN100.
References
1] ISfinder annotation (2017)
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ. Microbiol. Apr 26. doi: 10.1111/1462-2920.13362.
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ. Microbiol. Apr 26. doi: 10.1111/1462-2920.13362.