ISMmo2

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LWQU01000030 ND Magnetospirillum moscoviense
Magnetospirillum moscoviense BB-1
DNA section
IS Length : 1790 bp

Ends


IR Length : 40/44

IRL : CATGCCTATCCGCTTAACGCACTCACCCACTACATGTAGTGTGCGCGCCT
IRR : CGTGCCTATCCGCTTAACGCACTCACCCGCTACATCTAGGGTGCTGCCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTAACGTCTACACTGAACATGCTAAATC8

DNA sequence

CATGCCTATCCGCTTAACGCACTCACCCACTACATGTAGTGTGCGCGCCTTATCCGGTTGACGCACACGATATAATCCTGTATCTTCACGGGGAATGATT
ACGGGAGTTCGCCATGCCACAGCCAGCCGTAGCATATATGACCGAGGACGAGTTCTTTGAGTTTGTCCAGACGCGTGATGAGAAGTGGGAGCTGATAGAC
GGTGAGCCGATGATGATGGCTGGCGCAACTCAACGCCACCAAGACATCGCGGCCAATACGTTGACCTCACTTCATACCCAATTGCGGGGTAAAAAGTGCC
GACCGACGGCTGCCGACACTGGCGTACCCACGAGTAACGGCACGATCAGATATCCTGATGTCGTCGTCGATTGTGGCAAGCGTGACGACCAAGCTATGCG
TGCCACAGCGCCGACGCTAGTTATCGAAGTCCTCTCACCATCGACAAGGGGCTTTGATTCTCATAAGAAGGTGATTGAGTACAAGTCACATCCTGACATC
AAGTACATCTTGCTGATTGACACAAATAATGCATGCTCACTGTTGCATTTTCGCGATGGCGAAGGCTGGGGCGAGGTTATGTATGACAGCCTTGATGATG
TCATCGAGTTTCCCGAAGTTGGTGCTACGCTTGCATTAAGTGACATCTATTTTGGTCTAGAGATGAAGCCCAAATTGGTGCGGGAAAGGGTTTGCTCCAA
GTGTGGAATGACACCCTGTGCTTGTGACGAGAGCGGCCCCATTCCAGGCATGTGATCGTGGACGTTCTCACTCGTTCCGATCTGCCGTTCCCGCAGTCTC
TGCCTGAGTTCCAGCAACTGTTTCCGGATGATGCCGCTTGCGCTCTCTATCTGGAAACGGCGCGGTGGGCTGACGGTTTTGCCTGTCCGAGTTGTGGTGT
AGTCGGCGAGCCGTTTAGAATTTCCACTCGTCCAGGCGTCCTGCGGTGTCGCGCCTGCCGCAAGGACACTGGCCTGACCGTCGGCACGGTGATGGAGCGC
AGCCGTGTACCGCTCAGCACTTGGTTCTGGGCTGCCTATCTGATCGCCAGCCAGACGCAAGGCATGTCCGCCGTCCAGTTCCAGCGCCAGCTCGGCCTGT
CTCGCTACGAAACAGCATTCGGCATCTTGCACAAGCTCCGCGCTGGCATGGTCCGGCCCGATCAGGACCGCATCGGCGGCCGGGACGGCGAACATGTCGA
GGTGGATGAGACGCTGGTGGGCGGACGTACACGCGGCGAAGGCCGAGGTGTCCACCGCAAGACGCTGGTCTCTTGCGCAGTCGAAGTTCGGCACCGGGAA
CCCGGAACCGCACAGGACAACAGGAGGGATGGACGCTATGCCGGACGCGTCCGCCTGGCCATCGTGCCTGATCGGTCAGCCGAGTCGCTCTGCGGTTTCG
TGGAAGGCGCGGTTGAGCCGGGAACGCTTCTGATCACCGATGACTGGAGTGCCTACGCCAGCTTGCGTAAGCGTGGGTACGACCATCATGCCATCGCCGA
ATGCGGTGAACCGGAGATCGCCGACGAGTTCCTGCCTATCGTCCATCTGGTGTTTTCAAATTTGAAGACTTGGCTGAACGGTATCCACCACGGCGTCAGC
GCCAAGCATTTGCAGGCGTATCTGAACGAGTTCACTTTCCGATTCAACCGCCGCTTCTATCCGTTTAACGCCTTCCGATCACTGCTGGGCATCGCTGGAG
ATACGATCGCTCCAACTTTCGGTGAGCTTTATTCCGGCGAATGGCAGCACCCTAGATGTAGCGGGTGAGTGCGTTAAGCGGATAGGCACG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
618 bp205 aa138755+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MTEDEFFEFVQTRDEKWELIDGEPMMMAGATQRHQDIAANTLTSLHTQLRGKKCRPTAADTGVPTSNGTIRYPDVVVDCGKRDDQAMRATAPTLVIEVLS
PSTRGFDSHKKVIEYKSHPDIKYILLIDTNNACSLLHFRDGEGWGEVMYDSLDDVIEFPEVGATLALSDIYFGLEMKPKLVRERVCSKCGMTPCACDESG
PIPGM

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1011 bp336 aa7581768+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVLTRSDLPFPQSLPEFQQLFPDDAACALYLETARWADGFACPSCGVVGEPFRISTRPGVLRCRACRKDTGLTVGTVMERSRVPLSTWFWAAYLIASQT
QGMSAVQFQRQLGLSRYETAFGILHKLRAGMVRPDQDRIGGRDGEHVEVDETLVGGRTRGEGRGVHRKTLVSCAVEVRHREPGTAQDNRRDGRYAGRVRL
AIVPDRSAESLCGFVEGAVEPGTLLITDDWSAYASLRKRGYDHHAIAECGEPEIADEFLPIVHLVFSNLKTWLNGIHHGVSAKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDTIAPTFGELYSGEWQHPRCSG

 

Blast result :
Comments
ISMmo2 is 88% (transposase) aa similar to ISAcr1.
References
1] ISfinder annotation (2017)
2] Koziaeva,V., Dziuba,M.V., Ivanov,T.M., Kuznetsov,B. and Grouzdev,D.S. (2016) Direct GenBank submission.