ISVasp4

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT607803 ND Variovorax sp.
Variovorax sp. HW608
DNA section
IS Length : 1096 bp

Ends


IR Length : 23

IRL : ACGGGGTATCCATTTAGCTCCAGTTGAACTAGCATCACTGGATGGACGTC
IRR : ACGGGGTATCCATTTAGCTCCAGCGACGAGAGATATATGGATGTTCATCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGAGTACTGGTTTTATGTACAGCATTCA8

DNA sequence

ACGGGGTATCCATTTAGCTCCAGTTGAACTAGCATCACTGGATGGACGTCCATATGTTAGTCCCCAAGGCGGGAGAGGACTACCCCGTGAACTGGAACCA
GTTCCTGGACTGGTTCGCCACCGAAGAGGCCTGTCTTGGCTATCTGGAGCGGCTGCGCTGGCCGCAAGGTTTCGTGTGCCCGCGCTGCGGGGTGGCCGCT
GAGCCCTATCGCTCCAGCCGCGCACGGCTGATGTGCCGAAGCTGCTCGACCCAAAGCACGGTGACCGCAGGCACCATCTTCGAGAAGACCCGCACGCCGC
TGCGGGTGTGGCTGGCCGCGGCCTGGTACGTCACCAACCAGAAGCATGGCGTCAGCGCGCTCGGACTGCAGCGCGTGCTCGGCCTGGGCAGCTACCAGAC
GGCCTGGGCGATGCTGCACCGTCTTCGCCAGGCGATGGTGCGCCCCGAGCGGGAACGGCTCGGCGGCATCGTGGAGGTCGACGAGATGTATCTGGCCATC
AGCGATCGTCAGCAGCCTGTCGCCCGTGGGAGGGGCAAGGGTCGAATAAGCCAGACGCATCAGATACCTGTGGCGATCGCCGTGGAACTGCATGAGCCCA
AGGGCTTCGGCCGACTGCGGCTCGAGCGCATCCATCGCGGCTCCACCGAGCAGGTCATCCCCTTCGTGCTCGCCAACATCGAACCTGGCTCACAGGTGTG
CACCGACGGCTCGGCCGTCTACCGCGATCTCGCGGATCTGGGCTATTTGCACCAGCGCACTGTTCATCGGGGCTCCGACGTTCCCGCGCACGTCTCCATG
GTTGGCGTTCACCGCGTGGCCGCACTGGTCAAGCGCTGGGTGCTGGGCACGCACCAAGGCGCCGTGCAGCCGGCGCATCTGGACGCCTACCTCGATGAGT
TTGTTTTTCGCTTCAATCGCAGGGCCTCGCGCTCGCGAGGGCTGCTGTTTTACCGGCTGCTGCAGCAGGCCGTCGTCACGGATCCGCTGACCTATCGCGA
TGTCGTGGACAACATCCCCAGATCCGCGGAAGTGGCGTAGATTACTGGATGAACATCCATATATCTCTCGTCGCTGGAGCTAAATGGATACCCCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
987 bp328 aa541040+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVPKAGEDYPVNWNQFLDWFATEEACLGYLERLRWPQGFVCPRCGVAAEPYRSSRARLMCRSCSTQSTVTAGTIFEKTRTPLRVWLAAAWYVTNQKHGV
SALGLQRVLGLGSYQTAWAMLHRLRQAMVRPERERLGGIVEVDEMYLAISDRQQPVARGRGKGRISQTHQIPVAIAVELHEPKGFGRLRLERIHRGSTEQ
VIPFVLANIEPGSQVCTDGSAVYRDLADLGYLHQRTVHRGSDVPAHVSMVGVHRVAALVKRWVLGTHQGAVQPAHLDAYLDEFVFRFNRRASRSRGLLFY
RLLQQAVVTDPLTYRDVVDNIPRSAEVA

 

Blast result :
Comments
ISVasp4 is 84% aa similar to ISRama1.
References
1] ISfinder annotation (2017)
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.