ISVasp4
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LT607803 | ND | Variovorax sp. | Variovorax sp. HW608 |
DNA section
IS Length : 1096 bp
Ends
IR Length : 23
IRL : ACGGGGTATCCATTTAGCTCCAGTTGAACTAGCATCACTGGATGGACGTC
IRR : ACGGGGTATCCATTTAGCTCCAGCGACGAGAGATATATGGATGTTCATCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGTACTGG | TTTTATGT | ACAGCATTCA | 8 |
DNA sequence
ACGGGGTATCCATTTAGCTCCAGTTGAACTAGCATCACTGGATGGACGTCCATATGTTAGTCCCCAAGGCGGGAGAGGACTACCCCGTGAACTGGAACCA
GTTCCTGGACTGGTTCGCCACCGAAGAGGCCTGTCTTGGCTATCTGGAGCGGCTGCGCTGGCCGCAAGGTTTCGTGTGCCCGCGCTGCGGGGTGGCCGCT
GAGCCCTATCGCTCCAGCCGCGCACGGCTGATGTGCCGAAGCTGCTCGACCCAAAGCACGGTGACCGCAGGCACCATCTTCGAGAAGACCCGCACGCCGC
TGCGGGTGTGGCTGGCCGCGGCCTGGTACGTCACCAACCAGAAGCATGGCGTCAGCGCGCTCGGACTGCAGCGCGTGCTCGGCCTGGGCAGCTACCAGAC
GGCCTGGGCGATGCTGCACCGTCTTCGCCAGGCGATGGTGCGCCCCGAGCGGGAACGGCTCGGCGGCATCGTGGAGGTCGACGAGATGTATCTGGCCATC
AGCGATCGTCAGCAGCCTGTCGCCCGTGGGAGGGGCAAGGGTCGAATAAGCCAGACGCATCAGATACCTGTGGCGATCGCCGTGGAACTGCATGAGCCCA
AGGGCTTCGGCCGACTGCGGCTCGAGCGCATCCATCGCGGCTCCACCGAGCAGGTCATCCCCTTCGTGCTCGCCAACATCGAACCTGGCTCACAGGTGTG
CACCGACGGCTCGGCCGTCTACCGCGATCTCGCGGATCTGGGCTATTTGCACCAGCGCACTGTTCATCGGGGCTCCGACGTTCCCGCGCACGTCTCCATG
GTTGGCGTTCACCGCGTGGCCGCACTGGTCAAGCGCTGGGTGCTGGGCACGCACCAAGGCGCCGTGCAGCCGGCGCATCTGGACGCCTACCTCGATGAGT
TTGTTTTTCGCTTCAATCGCAGGGCCTCGCGCTCGCGAGGGCTGCTGTTTTACCGGCTGCTGCAGCAGGCCGTCGTCACGGATCCGCTGACCTATCGCGA
TGTCGTGGACAACATCCCCAGATCCGCGGAAGTGGCGTAGATTACTGGATGAACATCCATATATCTCTCGTCGCTGGAGCTAAATGGATACCCCGT
GTTCCTGGACTGGTTCGCCACCGAAGAGGCCTGTCTTGGCTATCTGGAGCGGCTGCGCTGGCCGCAAGGTTTCGTGTGCCCGCGCTGCGGGGTGGCCGCT
GAGCCCTATCGCTCCAGCCGCGCACGGCTGATGTGCCGAAGCTGCTCGACCCAAAGCACGGTGACCGCAGGCACCATCTTCGAGAAGACCCGCACGCCGC
TGCGGGTGTGGCTGGCCGCGGCCTGGTACGTCACCAACCAGAAGCATGGCGTCAGCGCGCTCGGACTGCAGCGCGTGCTCGGCCTGGGCAGCTACCAGAC
GGCCTGGGCGATGCTGCACCGTCTTCGCCAGGCGATGGTGCGCCCCGAGCGGGAACGGCTCGGCGGCATCGTGGAGGTCGACGAGATGTATCTGGCCATC
AGCGATCGTCAGCAGCCTGTCGCCCGTGGGAGGGGCAAGGGTCGAATAAGCCAGACGCATCAGATACCTGTGGCGATCGCCGTGGAACTGCATGAGCCCA
AGGGCTTCGGCCGACTGCGGCTCGAGCGCATCCATCGCGGCTCCACCGAGCAGGTCATCCCCTTCGTGCTCGCCAACATCGAACCTGGCTCACAGGTGTG
CACCGACGGCTCGGCCGTCTACCGCGATCTCGCGGATCTGGGCTATTTGCACCAGCGCACTGTTCATCGGGGCTCCGACGTTCCCGCGCACGTCTCCATG
GTTGGCGTTCACCGCGTGGCCGCACTGGTCAAGCGCTGGGTGCTGGGCACGCACCAAGGCGCCGTGCAGCCGGCGCATCTGGACGCCTACCTCGATGAGT
TTGTTTTTCGCTTCAATCGCAGGGCCTCGCGCTCGCGAGGGCTGCTGTTTTACCGGCTGCTGCAGCAGGCCGTCGTCACGGATCCGCTGACCTATCGCGA
TGTCGTGGACAACATCCCCAGATCCGCGGAAGTGGCGTAGATTACTGGATGAACATCCATATATCTCTCGTCGCTGGAGCTAAATGGATACCCCGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 54 | 1040 | + | No |
Chemistry : DDE
ORF sequence :
MLVPKAGEDYPVNWNQFLDWFATEEACLGYLERLRWPQGFVCPRCGVAAEPYRSSRARLMCRSCSTQSTVTAGTIFEKTRTPLRVWLAAAWYVTNQKHGV
SALGLQRVLGLGSYQTAWAMLHRLRQAMVRPERERLGGIVEVDEMYLAISDRQQPVARGRGKGRISQTHQIPVAIAVELHEPKGFGRLRLERIHRGSTEQ
VIPFVLANIEPGSQVCTDGSAVYRDLADLGYLHQRTVHRGSDVPAHVSMVGVHRVAALVKRWVLGTHQGAVQPAHLDAYLDEFVFRFNRRASRSRGLLFY
RLLQQAVVTDPLTYRDVVDNIPRSAEVA
SALGLQRVLGLGSYQTAWAMLHRLRQAMVRPERERLGGIVEVDEMYLAISDRQQPVARGRGKGRISQTHQIPVAIAVELHEPKGFGRLRLERIHRGSTEQ
VIPFVLANIEPGSQVCTDGSAVYRDLADLGYLHQRTVHRGSDVPAHVSMVGVHRVAALVKRWVLGTHQGAVQPAHLDAYLDEFVFRFNRRASRSRGLLFY
RLLQQAVVTDPLTYRDVVDNIPRSAEVA
Blast result :
Comments
ISVasp4 is 84% aa similar to ISRama1.
References
1] ISfinder annotation (2017)
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.