ISBeb4
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MERG01000223 | ND | Betaproteobacteria bacterium | Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 |
DNA section
IS Length : 998 bp
Ends
IR Length : 29/30
IRL : TAGGGCTATCCATTTGACTCAACCAGCCACAAGGGGTAGTGTTGAGCGGG
IRR : TGGGGCTATCCATTTGACTCAACCAGCCACTATCGCTTGTGTGCGACCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGCATGGTGTATTAAAGAA | ATAAGTTATTGATATTAAAG | 0 |
DNA sequence
TAGGGCTATCCATTTGACTCAACCAGCCACAAGGGGTAGTGTTGAGCGGGTATGGAAGCGTACCCGCGGACATTGATGGAGTTTGAGAACCAGTTTGCGA
CTGAGCAGGCGTGTCGGCTGTATCTGGAACAACTGAGGTGGCCGGAGGGGTTCAGGTGTCCTCGGTGTGGTGGCGCGGAGGCATGGCGCATGGCCCGTGG
GCTGTGGCTTTGCGGACGATGCCGACATCAGAGCTCGGTGCTGGTCGGAACGGTCTTCGAGCGCAGCCGACTTCCGCTGTCGCTGTGGTTTCGCGCAATG
TGGCATGTAACGAACCAGAAGAATGGGGCGAGTGCCCTGACCATCCAGCGGCTGCTGGGCTTGGGGAGCTACCAAACGGCATGGGCGTGGCTGCAGAAGT
TGCGCCGGGCGATGGTTCGTCCGGGGCGCGATCGCTTGGAAGGCGTGGTGGAAGCCGATGAGAGCTACCTTGGCGGAGAGAAGCCGGGCAAACGGGGTCG
CGGTGCCCACGGGAAGGCCCTGGTGTTGCTGGCGGTTCAGCTTCAGCCGGGGGACAAAATCGGCCGCATCCGTTTGGCTCACGTGCCCGATGCCTCGGGG
CAATCGTTGGTCCCAGCCTTGGCGACAATGGTGATGCCGGGCAGCAAAGTCAAAACCGATGGGTGGGGCGGGTACCATGGCCTGGCGTCTAAGGGGTATC
GACACACGGTAGTTCGCCGCTCTGCCGAGATCGGGGAGAACTTGTTGCCGGCCTGCCACCGCGTAGCCAGCCTCCTGAAACGATGGCTGTTGGGGACGCA
TCAAGGGGCAGTTAGTCATGAACATCTGGCCTACTACTTGGATGAGTTCACCTTTCGATTCAACCGCCGAACCTCGGCGTCCCGGGGCAAGCTCTTTTAC
CGATTGGCTCAGCAGGCCGTCCAGGTGGAGCCTGCACCCTACGCTAGGTTGGTCGCACACAAGCGATAGTGGCTGGTTGAGTCAAATGGATAGCCCCA
CTGAGCAGGCGTGTCGGCTGTATCTGGAACAACTGAGGTGGCCGGAGGGGTTCAGGTGTCCTCGGTGTGGTGGCGCGGAGGCATGGCGCATGGCCCGTGG
GCTGTGGCTTTGCGGACGATGCCGACATCAGAGCTCGGTGCTGGTCGGAACGGTCTTCGAGCGCAGCCGACTTCCGCTGTCGCTGTGGTTTCGCGCAATG
TGGCATGTAACGAACCAGAAGAATGGGGCGAGTGCCCTGACCATCCAGCGGCTGCTGGGCTTGGGGAGCTACCAAACGGCATGGGCGTGGCTGCAGAAGT
TGCGCCGGGCGATGGTTCGTCCGGGGCGCGATCGCTTGGAAGGCGTGGTGGAAGCCGATGAGAGCTACCTTGGCGGAGAGAAGCCGGGCAAACGGGGTCG
CGGTGCCCACGGGAAGGCCCTGGTGTTGCTGGCGGTTCAGCTTCAGCCGGGGGACAAAATCGGCCGCATCCGTTTGGCTCACGTGCCCGATGCCTCGGGG
CAATCGTTGGTCCCAGCCTTGGCGACAATGGTGATGCCGGGCAGCAAAGTCAAAACCGATGGGTGGGGCGGGTACCATGGCCTGGCGTCTAAGGGGTATC
GACACACGGTAGTTCGCCGCTCTGCCGAGATCGGGGAGAACTTGTTGCCGGCCTGCCACCGCGTAGCCAGCCTCCTGAAACGATGGCTGTTGGGGACGCA
TCAAGGGGCAGTTAGTCATGAACATCTGGCCTACTACTTGGATGAGTTCACCTTTCGATTCAACCGCCGAACCTCGGCGTCCCGGGGCAAGCTCTTTTAC
CGATTGGCTCAGCAGGCCGTCCAGGTGGAGCCTGCACCCTACGCTAGGTTGGTCGCACACAAGCGATAGTGGCTGGTTGAGTCAAATGGATAGCCCCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
918 bp | 305 aa | 52 | 969 | + | No |
Chemistry : DDE
ORF sequence :
MEAYPRTLMEFENQFATEQACRLYLEQLRWPEGFRCPRCGGAEAWRMARGLWLCGRCRHQSSVLVGTVFERSRLPLSLWFRAMWHVTNQKNGASALTIQR
LLGLGSYQTAWAWLQKLRRAMVRPGRDRLEGVVEADESYLGGEKPGKRGRGAHGKALVLLAVQLQPGDKIGRIRLAHVPDASGQSLVPALATMVMPGSKV
KTDGWGGYHGLASKGYRHTVVRRSAEIGENLLPACHRVASLLKRWLLGTHQGAVSHEHLAYYLDEFTFRFNRRTSASRGKLFYRLAQQAVQVEPAPYARL
VAHKR
LLGLGSYQTAWAWLQKLRRAMVRPGRDRLEGVVEADESYLGGEKPGKRGRGAHGKALVLLAVQLQPGDKIGRIRLAHVPDASGQSLVPALATMVMPGSKV
KTDGWGGYHGLASKGYRHTVVRRSAEIGENLLPACHRVASLLKRWLLGTHQGAVSHEHLAYYLDEFTFRFNRRTSASRGKLFYRLAQQAVQVEPAPYARL
VAHKR
Blast result :
Comments
ISBeb4 is 76% aa similar to ISDth3.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.