ISBeb4

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MERG01000223 ND Betaproteobacteria bacterium
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13
DNA section
IS Length : 998 bp

Ends


IR Length : 29/30

IRL : TAGGGCTATCCATTTGACTCAACCAGCCACAAGGGGTAGTGTTGAGCGGG
IRR : TGGGGCTATCCATTTGACTCAACCAGCCACTATCGCTTGTGTGCGACCAA

Insertion site


Left flankDirect repeatRight flankDR Length
CCGCATGGTGTATTAAAGAAATAAGTTATTGATATTAAAG0

DNA sequence

TAGGGCTATCCATTTGACTCAACCAGCCACAAGGGGTAGTGTTGAGCGGGTATGGAAGCGTACCCGCGGACATTGATGGAGTTTGAGAACCAGTTTGCGA
CTGAGCAGGCGTGTCGGCTGTATCTGGAACAACTGAGGTGGCCGGAGGGGTTCAGGTGTCCTCGGTGTGGTGGCGCGGAGGCATGGCGCATGGCCCGTGG
GCTGTGGCTTTGCGGACGATGCCGACATCAGAGCTCGGTGCTGGTCGGAACGGTCTTCGAGCGCAGCCGACTTCCGCTGTCGCTGTGGTTTCGCGCAATG
TGGCATGTAACGAACCAGAAGAATGGGGCGAGTGCCCTGACCATCCAGCGGCTGCTGGGCTTGGGGAGCTACCAAACGGCATGGGCGTGGCTGCAGAAGT
TGCGCCGGGCGATGGTTCGTCCGGGGCGCGATCGCTTGGAAGGCGTGGTGGAAGCCGATGAGAGCTACCTTGGCGGAGAGAAGCCGGGCAAACGGGGTCG
CGGTGCCCACGGGAAGGCCCTGGTGTTGCTGGCGGTTCAGCTTCAGCCGGGGGACAAAATCGGCCGCATCCGTTTGGCTCACGTGCCCGATGCCTCGGGG
CAATCGTTGGTCCCAGCCTTGGCGACAATGGTGATGCCGGGCAGCAAAGTCAAAACCGATGGGTGGGGCGGGTACCATGGCCTGGCGTCTAAGGGGTATC
GACACACGGTAGTTCGCCGCTCTGCCGAGATCGGGGAGAACTTGTTGCCGGCCTGCCACCGCGTAGCCAGCCTCCTGAAACGATGGCTGTTGGGGACGCA
TCAAGGGGCAGTTAGTCATGAACATCTGGCCTACTACTTGGATGAGTTCACCTTTCGATTCAACCGCCGAACCTCGGCGTCCCGGGGCAAGCTCTTTTAC
CGATTGGCTCAGCAGGCCGTCCAGGTGGAGCCTGCACCCTACGCTAGGTTGGTCGCACACAAGCGATAGTGGCTGGTTGAGTCAAATGGATAGCCCCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
918 bp305 aa52969+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEAYPRTLMEFENQFATEQACRLYLEQLRWPEGFRCPRCGGAEAWRMARGLWLCGRCRHQSSVLVGTVFERSRLPLSLWFRAMWHVTNQKNGASALTIQR
LLGLGSYQTAWAWLQKLRRAMVRPGRDRLEGVVEADESYLGGEKPGKRGRGAHGKALVLLAVQLQPGDKIGRIRLAHVPDASGQSLVPALATMVMPGSKV
KTDGWGGYHGLASKGYRHTVVRRSAEIGENLLPACHRVASLLKRWLLGTHQGAVSHEHLAYYLDEFTFRFNRRTSASRGKLFYRLAQQAVQVEPAPYARL
VAHKR

 

Blast result :
Comments
ISBeb4 is 76% aa similar to ISDth3.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.