ISEba1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| MFFR01000234 | ND | Eisenbacteria bacterium | Eisenbacteria bacterium RBG_19FT_COMBO_70_11 Candidatus Eisenbacteria bacterium RBG_19FT_COMBO_70_11 |
DNA section
IS Length : 978 bp
Ends
IR Length : 24/27
IRL : CGTGCCTATCGGATTGACTCCGAAAGGGAGTCTTTGTAGGTTGGGGCGTG
IRR : CGTGCCTATCGGATTAGCTCCGAATGGCCCGGCGGCACCTCACGGGCTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACCATGCGAA | TTCCGGAA | TTGAAACCAC | 8 |
DNA sequence
CGTGCCTATCGGATTGACTCCGAAAGGGAGTCTTTGTAGGTTGGGGCGTGCCTCGCCCGACCTTTCCTCGCACGCTGGCTGAGTTCCATGTGTCGTTCCC
CGACCGGGACTCGTGCGTGCTCTATCTCGCGCAGTCGCGCTGGCCGGAGGGCTTCGCCTGCCCGAGTTGTGGGCGGGGCGAGGCGTACAGGCTGCCGAAG
CGGGGGCTCTGGCAGTGCAAGAGTTGTGGCCACCAGACGTCCCCGACCGCGGGCACGGTCCTACATCGATCTCGGGTCCCGCTGCGGCAATGGTTCGAGG
CGGCCTACCTGGTGAGCACGCTGACCCCGGGAGTGTCGGCGGTCCAGTTGCAGCGCCAGCTCGGCCTGGCCACCTACGAGACAGCTTGGACCATGCTCCA
TCGGCTCCGACGGGCGATGCTTCGGCCGGAGCGCGATCGGCTCACCGGTCCCGTAGAGATCGACGAGAGCTTCATCGGAGGTGCTCGTTCGGGAACGCCC
GGGCGGGGTGCTGGTGGCAAGACCCTTATCGTCGGAGCGGTCGAAGTCAGGGGCGAGGGCTCCGGGCGGGTGCGGCTCGCAACGATTCCGAATGCCTCTC
GAGCCACCCTCGAAGCCTTCGTCCGGGCCAACGTCGTCGCGGGAGGCGTCATCTTCTCTGACGGCTGGGCGGGGTACGAGGGCCTCAAGTCGCTGGGGTA
CAACCATCGCCCAAGAACTCAGGGCGGCAAGCGCAACCCACGAAACATCCTCCCCAGGATCCACAGGACGTTCTCGAACCTGAAGGCATGGCTTGTCGGG
ACCCACCACGGAGTTGGCGCCAAGAATGTGAACAGCTACCTCCGCGAGTTCGAGTTCCGTTTCAATCGCAGAAAGGTGCCGATGGCTGCGTTCCAGACGC
TTCTCGGCCTCACGAGCCATCATCCGCCGCAGCCCGTGAGGTGCCGCCGGGCCATTCGGAGCTAATCCGATAGGCACG
CGACCGGGACTCGTGCGTGCTCTATCTCGCGCAGTCGCGCTGGCCGGAGGGCTTCGCCTGCCCGAGTTGTGGGCGGGGCGAGGCGTACAGGCTGCCGAAG
CGGGGGCTCTGGCAGTGCAAGAGTTGTGGCCACCAGACGTCCCCGACCGCGGGCACGGTCCTACATCGATCTCGGGTCCCGCTGCGGCAATGGTTCGAGG
CGGCCTACCTGGTGAGCACGCTGACCCCGGGAGTGTCGGCGGTCCAGTTGCAGCGCCAGCTCGGCCTGGCCACCTACGAGACAGCTTGGACCATGCTCCA
TCGGCTCCGACGGGCGATGCTTCGGCCGGAGCGCGATCGGCTCACCGGTCCCGTAGAGATCGACGAGAGCTTCATCGGAGGTGCTCGTTCGGGAACGCCC
GGGCGGGGTGCTGGTGGCAAGACCCTTATCGTCGGAGCGGTCGAAGTCAGGGGCGAGGGCTCCGGGCGGGTGCGGCTCGCAACGATTCCGAATGCCTCTC
GAGCCACCCTCGAAGCCTTCGTCCGGGCCAACGTCGTCGCGGGAGGCGTCATCTTCTCTGACGGCTGGGCGGGGTACGAGGGCCTCAAGTCGCTGGGGTA
CAACCATCGCCCAAGAACTCAGGGCGGCAAGCGCAACCCACGAAACATCCTCCCCAGGATCCACAGGACGTTCTCGAACCTGAAGGCATGGCTTGTCGGG
ACCCACCACGGAGTTGGCGCCAAGAATGTGAACAGCTACCTCCGCGAGTTCGAGTTCCGTTTCAATCGCAGAAAGGTGCCGATGGCTGCGTTCCAGACGC
TTCTCGGCCTCACGAGCCATCATCCGCCGCAGCCCGTGAGGTGCCGCCGGGCCATTCGGAGCTAATCCGATAGGCACG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 918 bp | 305 aa | 48 | 965 | + | No |
Chemistry : DDE
ORF sequence :
MPRPTFPRTLAEFHVSFPDRDSCVLYLAQSRWPEGFACPSCGRGEAYRLPKRGLWQCKSCGHQTSPTAGTVLHRSRVPLRQWFEAAYLVSTLTPGVSAVQ
LQRQLGLATYETAWTMLHRLRRAMLRPERDRLTGPVEIDESFIGGARSGTPGRGAGGKTLIVGAVEVRGEGSGRVRLATIPNASRATLEAFVRANVVAGG
VIFSDGWAGYEGLKSLGYNHRPRTQGGKRNPRNILPRIHRTFSNLKAWLVGTHHGVGAKNVNSYLREFEFRFNRRKVPMAAFQTLLGLTSHHPPQPVRCR
RAIRS
LQRQLGLATYETAWTMLHRLRRAMLRPERDRLTGPVEIDESFIGGARSGTPGRGAGGKTLIVGAVEVRGEGSGRVRLATIPNASRATLEAFVRANVVAGG
VIFSDGWAGYEGLKSLGYNHRPRTQGGKRNPRNILPRIHRTFSNLKAWLVGTHHGVGAKNVNSYLREFEFRFNRRKVPMAAFQTLLGLTSHHPPQPVRCR
RAIRS
Blast result :
Comments
ISEba1 is 67% aa similar to ISRop3.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.