ISIsa1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BBYR01000017 ND Ideonella sakaiensis
Ideonella sakaiensis 201-F6
DNA section
IS Length : 1032 bp

Ends


IR Length : 19/23

IRL : CCTGATTCGTCACCAAGCTCAGCAGGATCACCCCATGAGCTATCCGGTGG
IRR : CCTGATTAGTCATGAACCTCAGCCGCCCCTCGAATCTGCCTCTCGCGCGT

Insertion site


Left flankDirect repeatRight flankDR Length
AACGGCCCCATCCCGGGGAGCCGGGTGG8

DNA sequence

CCTGATTCGTCACCAAGCTCAGCAGGATCACCCCATGAGCTATCCGGTGGCTACGCTGGCAGCAGCAGAGCCGACGGAGCCCAGCATGTCGATGAACCGA
GTTCAGTTCCAGCGCGGGTTGCCGCTGAGCGAGTTCTTCGCCCGCTATTGCAGCGAGGCGCAGTGCGAAGCGGCGCTGAAGGCGCTTCGATGGCCCGACG
GCTTCCGCTGTCCGCGCTGTGCAGGGGTGGCCTGCTACGCGGTCGGTCGCCTGTTCCAGTGTTGTGCCTGCCGTCACCAGACCTCGCTGACGGCCGGTAC
GGTGATGGACAGCACCAAACTGCCGCTGCGGACCTGGTTCCTGGCCATCTACCTGATCAGCCAGGACAAGACCGGGCTGTCGTCCCTGGCCCTCATGCGG
CAGTTGGGCACCAGCTATCGCACCGCCTGGCTCGTTCACCACAAGCTGATGGCGGCCATGGCCGCGCACGACGCCACTCAGCCGCTGTCGGGCAATGTGC
AGATCGACGATGCCTACCTCGGAGGCGAGCACCCCGGCACGGTGGGCCGAGCCGATCCGGCGAAGGTTCCGATCATCGCCGCGGTCTCCACCAACGACCG
CGGTAACCCGATGCGCGTCAAGCTCGCGGCATTGACGGGCTTCACCCGCGAGGCCATCGCCAACTGGGCCCGCGTCAATCTGAAGCCGGGTTGCGACGTC
CGCAGCGACGGCCTGAGCTGCTTTGCAGGTGTCATCGACGCGGGCTGTGCACATTCGTACATCGTCGTCGGCGACCGCAAGCCCCGGGATCTGCCGCAGT
TCACCTGGGTCAACACCATCCTTGGCAACCTGAAGACCGCCATCAGCGGCGGCCTCAAGGCGTTCAAGTACGCCAAGTACGCCGGCAGCTACCTCGGCGC
CTTCGCGTTCCGCTTCAACGGCAGGTTCAATCTGCCCGCCTTGCTTCGCGACCTCATCTCCAACGCCGCCACCTCGCAACCTACGCGCGAGAGGCAGATT
CGAGGGGCGGCTGAGGTTCATGACTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa861027+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSMNRVQFQRGLPLSEFFARYCSEAQCEAALKALRWPDGFRCPRCAGVACYAVGRLFQCCACRHQTSLTAGTVMDSTKLPLRTWFLAIYLISQDKTGLSS
LALMRQLGTSYRTAWLVHHKLMAAMAAHDATQPLSGNVQIDDAYLGGEHPGTVGRADPAKVPIIAAVSTNDRGNPMRVKLAALTGFTREAIANWARVNLK
PGCDVRSDGLSCFAGVIDAGCAHSYIVVGDRKPRDLPQFTWVNTILGNLKTAISGGLKAFKYAKYAGSYLGAFAFRFNGRFNLPALLRDLISNAATSQPT
RERQIRGAAEVHD

 

Blast result :
Comments
ISIsa1 is 71% aa similar to ISPa72.
References
1] ISfinder annotation (2017)
2] Yoshida,S., Hiraga,K., Takehana,T., Taniguchi,I., Yamaji,H., Maeda,Y., Toyohara,K., Miyamoto,K., Kimura,Y. and Oda,K. (2016) Science 351 (6278), 1196-1199.