ISVasp2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MKWO01000008 | ND | Variovorax sp. | Variovorax sp. 67-131 |
DNA section
IS Length : 1045 bp
Ends
IR Length : 22/24
IRL : CCTGATTCGTCACGAACCTCAGCCTGGCGCATAGCCTGAGCCTGTGGCCC
IRR : CCTGATTAGTCATGAACCTCAGCCGTACCACGAATCTGGCGTTCCCGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGGTCAGGA | TGCCGGCA | TGTGGTTCCC | 8 |
DNA sequence
CCTGATTCGTCACGAACCTCAGCCTGGCGCATAGCCTGAGCCTGTGGCCCGATACGCTGACTCACTCCAACCCTGGAGAGCCAGCCATGCCGATGAACCG
AATCCAGTTCCAGCCTGGGGTCTCGTTGCCCGAGTTCTTCGCCCGCTACGGGACCGAGGAGCAATGCACAGCGGCGCTGGCTGCGCTGCGTTGGCCTGAG
GGCTTTCGCTGTCCGCGCTGCGCATCGGCGGCGCATTACGTGGTCGGCCACGGTGCGCGCAAGTTGTTCCAGTGCCAAGCTTGCCGGCACCAGACCTCCC
TGACGGCCAGCACGTTGATGGACAGCACCAAGCTGCCGCTGCGCACCTGGTTCCTGGCCATCTTCCTGATCAGCCAGAACAAGACGGGCTTGTCGTCGTT
GGCCCTCATGCGCCAGCTGGGCACGAGCTACCGCACGGCCTGGCTGATCCACCACAAGCTCATGACCGCCATGGCCGAGCACGACCGCCGGCAACCTCTG
AGCGGCGATGTACAACTCGACGACGCCTACCTGGGCGGCGAACGACCCGGCGTCGGCGGCCGAGGCTCGCCCAACAAGGTGCCCATCGTCGCGGCGGTCA
GCACCAACGATGCCGGTCATCCGTTGCGGGTCAAGGTCTCCCCGGTGGCGGCCTTCACCACCGAAGCCATCAAACGCTGGGCCCAAGTCAACTTGCTGCC
GGGCTGCGATGTGCGCAGCGATGGCCTGAATTGCTTCGCTGGCGTCATCGATGCCGGATGCGCGCACTCCTACATCGTCGTGGGCTCGCGCAAGCCGCGC
GACATGCCTCAGTTCAGCTGGGTCAACACCGTGCTGGGCAACCTCAAGACCATGATCGGTGGCGCCCACAAGGCCTTCAAGTTCCGCAAGTACGCAACCC
AGTACCTTGGTGCCTTCGCCTACCGGTTCAACGCCCGCTTCAACCTCAACAACCTCCTGCTGGGCTTGCTCGGCCACGCCGCCACGGCTTCGCCTACCCG
GGAACGCCAGATTCGTGGTACGGCTGAGGTTCATGACTAATCAGG
AATCCAGTTCCAGCCTGGGGTCTCGTTGCCCGAGTTCTTCGCCCGCTACGGGACCGAGGAGCAATGCACAGCGGCGCTGGCTGCGCTGCGTTGGCCTGAG
GGCTTTCGCTGTCCGCGCTGCGCATCGGCGGCGCATTACGTGGTCGGCCACGGTGCGCGCAAGTTGTTCCAGTGCCAAGCTTGCCGGCACCAGACCTCCC
TGACGGCCAGCACGTTGATGGACAGCACCAAGCTGCCGCTGCGCACCTGGTTCCTGGCCATCTTCCTGATCAGCCAGAACAAGACGGGCTTGTCGTCGTT
GGCCCTCATGCGCCAGCTGGGCACGAGCTACCGCACGGCCTGGCTGATCCACCACAAGCTCATGACCGCCATGGCCGAGCACGACCGCCGGCAACCTCTG
AGCGGCGATGTACAACTCGACGACGCCTACCTGGGCGGCGAACGACCCGGCGTCGGCGGCCGAGGCTCGCCCAACAAGGTGCCCATCGTCGCGGCGGTCA
GCACCAACGATGCCGGTCATCCGTTGCGGGTCAAGGTCTCCCCGGTGGCGGCCTTCACCACCGAAGCCATCAAACGCTGGGCCCAAGTCAACTTGCTGCC
GGGCTGCGATGTGCGCAGCGATGGCCTGAATTGCTTCGCTGGCGTCATCGATGCCGGATGCGCGCACTCCTACATCGTCGTGGGCTCGCGCAAGCCGCGC
GACATGCCTCAGTTCAGCTGGGTCAACACCGTGCTGGGCAACCTCAAGACCATGATCGGTGGCGCCCACAAGGCCTTCAAGTTCCGCAAGTACGCAACCC
AGTACCTTGGTGCCTTCGCCTACCGGTTCAACGCCCGCTTCAACCTCAACAACCTCCTGCTGGGCTTGCTCGGCCACGCCGCCACGGCTTCGCCTACCCG
GGAACGCCAGATTCGTGGTACGGCTGAGGTTCATGACTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 87 | 1040 | + | No |
Chemistry : DDE
ORF sequence :
MPMNRIQFQPGVSLPEFFARYGTEEQCTAALAALRWPEGFRCPRCASAAHYVVGHGARKLFQCQACRHQTSLTASTLMDSTKLPLRTWFLAIFLISQNKT
GLSSLALMRQLGTSYRTAWLIHHKLMTAMAEHDRRQPLSGDVQLDDAYLGGERPGVGGRGSPNKVPIVAAVSTNDAGHPLRVKVSPVAAFTTEAIKRWAQ
VNLLPGCDVRSDGLNCFAGVIDAGCAHSYIVVGSRKPRDMPQFSWVNTVLGNLKTMIGGAHKAFKFRKYATQYLGAFAYRFNARFNLNNLLLGLLGHAAT
ASPTRERQIRGTAEVHD
GLSSLALMRQLGTSYRTAWLIHHKLMTAMAEHDRRQPLSGDVQLDDAYLGGERPGVGGRGSPNKVPIVAAVSTNDAGHPLRVKVSPVAAFTTEAIKRWAQ
VNLLPGCDVRSDGLNCFAGVIDAGCAHSYIVVGSRKPRDMPQFSWVNTVLGNLKTMIGGAHKAFKFRKYATQYLGAFAYRFNARFNLNNLLLGLLGHAAT
ASPTRERQIRGTAEVHD
Blast result :
Comments
ISVasp2 is 73% aa similar to ISPa72.
References
1] ISfinder annotation (2017)
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2016) Direct GenBank submission.
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2016) Direct GenBank submission.