ISVasp2

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MKWO01000008 ND Variovorax sp.
Variovorax sp. 67-131
DNA section
IS Length : 1045 bp

Ends


IR Length : 22/24

IRL : CCTGATTCGTCACGAACCTCAGCCTGGCGCATAGCCTGAGCCTGTGGCCC
IRR : CCTGATTAGTCATGAACCTCAGCCGTACCACGAATCTGGCGTTCCCGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTGGTCAGGATGCCGGCATGTGGTTCCC8

DNA sequence

CCTGATTCGTCACGAACCTCAGCCTGGCGCATAGCCTGAGCCTGTGGCCCGATACGCTGACTCACTCCAACCCTGGAGAGCCAGCCATGCCGATGAACCG
AATCCAGTTCCAGCCTGGGGTCTCGTTGCCCGAGTTCTTCGCCCGCTACGGGACCGAGGAGCAATGCACAGCGGCGCTGGCTGCGCTGCGTTGGCCTGAG
GGCTTTCGCTGTCCGCGCTGCGCATCGGCGGCGCATTACGTGGTCGGCCACGGTGCGCGCAAGTTGTTCCAGTGCCAAGCTTGCCGGCACCAGACCTCCC
TGACGGCCAGCACGTTGATGGACAGCACCAAGCTGCCGCTGCGCACCTGGTTCCTGGCCATCTTCCTGATCAGCCAGAACAAGACGGGCTTGTCGTCGTT
GGCCCTCATGCGCCAGCTGGGCACGAGCTACCGCACGGCCTGGCTGATCCACCACAAGCTCATGACCGCCATGGCCGAGCACGACCGCCGGCAACCTCTG
AGCGGCGATGTACAACTCGACGACGCCTACCTGGGCGGCGAACGACCCGGCGTCGGCGGCCGAGGCTCGCCCAACAAGGTGCCCATCGTCGCGGCGGTCA
GCACCAACGATGCCGGTCATCCGTTGCGGGTCAAGGTCTCCCCGGTGGCGGCCTTCACCACCGAAGCCATCAAACGCTGGGCCCAAGTCAACTTGCTGCC
GGGCTGCGATGTGCGCAGCGATGGCCTGAATTGCTTCGCTGGCGTCATCGATGCCGGATGCGCGCACTCCTACATCGTCGTGGGCTCGCGCAAGCCGCGC
GACATGCCTCAGTTCAGCTGGGTCAACACCGTGCTGGGCAACCTCAAGACCATGATCGGTGGCGCCCACAAGGCCTTCAAGTTCCGCAAGTACGCAACCC
AGTACCTTGGTGCCTTCGCCTACCGGTTCAACGCCCGCTTCAACCTCAACAACCTCCTGCTGGGCTTGCTCGGCCACGCCGCCACGGCTTCGCCTACCCG
GGAACGCCAGATTCGTGGTACGGCTGAGGTTCATGACTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa871040+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPMNRIQFQPGVSLPEFFARYGTEEQCTAALAALRWPEGFRCPRCASAAHYVVGHGARKLFQCQACRHQTSLTASTLMDSTKLPLRTWFLAIFLISQNKT
GLSSLALMRQLGTSYRTAWLIHHKLMTAMAEHDRRQPLSGDVQLDDAYLGGERPGVGGRGSPNKVPIVAAVSTNDAGHPLRVKVSPVAAFTTEAIKRWAQ
VNLLPGCDVRSDGLNCFAGVIDAGCAHSYIVVGSRKPRDMPQFSWVNTVLGNLKTMIGGAHKAFKFRKYATQYLGAFAYRFNARFNLNNLLLGLLGHAAT
ASPTRERQIRGTAEVHD

 

Blast result :
Comments
ISVasp2 is 73% aa similar to ISPa72.
References
1] ISfinder annotation (2017)
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2016) Direct GenBank submission.