ISMko2

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LUUL01000074 ND Methylomonas koyamae
Methylomonas koyamae R-49807
DNA section
IS Length : 1054 bp

Ends


IR Length : 24/25

IRL : CCTGATTAGAAAGCTCCTTCAGCTTACCTGCGGAATCCAAGAGATTACCG
IRR : CCTGATTAGCAAGCTCCTTCAGCTTGACGAAGCCAAGTGGCTGGACGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TAAGCAGTCATACAAAATTAACTTGGTA8

DNA sequence

CCTGATTAGAAAGCTCCTTCAGCTTACCTGCGGAATCCAAGAGATTACCGACTAAAAAGCGCATACTGGCTTCCAATTCCCAGGAGACGCCTGTCATGGC
CATGAATCGTATCCAATTTCAAAAGGGCTTATCACTGCCCGCTTTTCTCGAGCAGTTTGGTACGGAAGCCCAATGCGAAACCGCACTGGAGAAAGCCCGT
TGGCCCGATGGGTTTCGTTGTCCGCGATGCGGGCAAGCACCGCATTACCTGCTCAGCATGGGTAGCCATCAGACTTACCAATGTCGAACTTGTCGGCTAC
AAACATCCCTCACTGCAGGCACTTTATTTCAGAGCACCCAGTTGGCATTAACGGTCTGGTTTATGGCGATCTATCTGATCAGCCAGGCCAAAACCAACTT
GTCCGCCTTGGCATTGAAACGCCTACTGGGCGTCAGTTACCCCACGGCGTGGCTGATGCAGCAAAAGCTGATGCAAACCATGGCGGAACGAGACGCGCTT
TATACCCTGGATGGACAGGTCCAGATTGACGATGCCTACCTCGGTGGTGAACTGGCGGGCGGCAAAGCCGGTCGTGGCTCCGAGAATAAAGTCCCCTTTG
TGGCAGCGGTTTCACTCGATAAGTCTGGACACCCTCTGTATATCAAAATGGCACCGGTTCCAGGTTTTACGCTCAAGGCCATTGCTGAATGGGCCCAACG
CGATCTCAGTCCGGGCTGCGTTGTCATTTCCGATGGTTTAGCCTGTTTTACGGGCGTCACGGCGGCGGGGTGTCAACATCAACCTATCGTCGTCGAGGGA
CGCAAGCCCAAGGAGTTACCCGAATTCAGTTGGATCAACACCGTATTGGGTAATCTCAAGACCAGTTTCGGCGGCGCTTACCACGCCTTCGATTTTTCCA
AGTATGGCATTCGTTACTTGGCGGCATTTGTGTATCGCTTTAACCGACGCTTCCACTTGGAGACTTTACCCACTCGTCTACTCGTTGCCGCCATCACTAT
CGGCCCGCGTCCAGCCACTTGGCTTCGTCAAGCTGAAGGAGCTTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa961049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAMNRIQFQKGLSLPAFLEQFGTEAQCETALEKARWPDGFRCPRCGQAPHYLLSMGSHQTYQCRTCRLQTSLTAGTLFQSTQLALTVWFMAIYLISQAKT
NLSALALKRLLGVSYPTAWLMQQKLMQTMAERDALYTLDGQVQIDDAYLGGELAGGKAGRGSENKVPFVAAVSLDKSGHPLYIKMAPVPGFTLKAIAEWA
QRDLSPGCVVISDGLACFTGVTAAGCQHQPIVVEGRKPKELPEFSWINTVLGNLKTSFGGAYHAFDFSKYGIRYLAAFVYRFNRRFHLETLPTRLLVAAI
TIGPRPATWLRQAEGAC

 

Blast result :
Comments
ISMko2 is 79% aa similar to ISMko1.
References
1] ISfinder annotation (2017)
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.