ISNimo1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FMWO01000027 ND Nitrosococcus mobilis
Nitrosococcus mobilis
DNA section
IS Length : 1052 bp

Ends


IR Length : 23

IRL : CCTGATTAGCAACGAACGTCAGCAAGATTTGTCTGACGAGTTTGTTGCGA
IRR : CCTGATTAGCAACGAACGTCAGCCATTCGAATAGAGTGCAAGGGCTGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
AATCGGCGATAAAATTGGTTTGTGCCTTTGAAGCTGATGC0

DNA sequence

CCTGATTAGCAACGAACGTCAGCAAGATTTGTCTGACGAGTTTGTTGCGACATAAAAGTCATGGCTGTTAAATGATACAAGGAGTTATCGATCATGGCGA
TGAATCGAATTCAATTTCAATCTGGACTGTCGATGCTTGAATTTCTCAAGGGCTTTGGTACGGAGGCGCAGTGCGAGCAAGCGCTGGAAGTTGCTCGTTG
GTCGGATGGGTTTCACTGCCCACGCTGTAACGGTACTGCTTACTATGTTATACGTGATGGTATACGCAAGGTTTTTCAATGCAGAGCCTGCCGACATCAG
ACCTCATTGATTGCCGGGACAGTTTTTCAGGGCGCTAAACTACCGTTGACCATCTGGTTTTTGGCAATTTATCTGGTTAGTCAGGCCAAGACCGGTTTGT
CGTCCCTGGCGCTCAAGCGCCAGCTGGGAGTGAGCTATCCTACGGCATGGTTGATACACCACAAACTGATGCAGGCGATGGCTAATCGTGAGGAGCGCTA
TGTCCTTGATGGCAGAATCCAGGTCGATGATGCTTATCTTGGTGGAGAGCGTGCGGGAGGAAAAGCGGGTAGAGGTTCAGAGAATAAGGTGCCCATTGTT
GCCGCTGTGTCTCTGACTGAAGATGATCACCCTTTGCGCGTGAGGCTTACCCCAGTCTCGGGATTTACGCTAAAGGCAATTTCAGCCTGGGCAAAGGATT
GTCTGGCACCCGGCTGCACGGTGTTCTCGGATGCCTTGGCCTGCTTTGGTGCCGTCACCAAAATTGGCTGTAGCCGCCATTTTACAGTTATCGCCGGATG
CAAACCAAAGGAGACTCCCGAGTTCCGGTGGATCAACACTATCCTCGGCAATCTCAAGACCAGCTTGTCGGGTTGTTACCATGCTTTCAACTTCCGCAAG
TATGCCGCTCGTTATCTTGCCGCCTTCAGTTACCGATTCAACCGGCGTTTTGATCTTTGCTCACTGCACGAACGATTGCTGATCGCCGCTGCTTCGACCA
CTCCGCAGCCCTTGCACTCTATTCGAATGGCTGACGTTCGTTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa941047+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAMNRIQFQSGLSMLEFLKGFGTEAQCEQALEVARWSDGFHCPRCNGTAYYVIRDGIRKVFQCRACRHQTSLIAGTVFQGAKLPLTIWFLAIYLVSQAKT
GLSSLALKRQLGVSYPTAWLIHHKLMQAMANREERYVLDGRIQVDDAYLGGERAGGKAGRGSENKVPIVAAVSLTEDDHPLRVRLTPVSGFTLKAISAWA
KDCLAPGCTVFSDALACFGAVTKIGCSRHFTVIAGCKPKETPEFRWINTILGNLKTSLSGCYHAFNFRKYAARYLAAFSYRFNRRFDLCSLHERLLIAAA
STTPQPLHSIRMADVRC

 

Blast result :
Comments
ISNimo1 is 84% aa similar to ISBeb3.
References
1] ISfinder annotation (2017)
2] Ushiki,N. (2016) Direct GenBank submission.