ISAlba1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LOEV01000075 ND Alphaproteobacteria bacterium
Alphaproteobacteria bacterium BRH_c36
DNA section
IS Length : 1032 bp

Ends


IR Length : 21/26

IRL : CCTGATTAGGCACCAACCTAAGCCATAATCCTGCCAAGCGACTCGGTTCG
IRR : CCTGATTACGCACCATAGTCAGCCATCTTGAGCCACGAGTAAGGGGCGGG

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGAAGGCAAAATCTCTTGACCCGACG8

DNA sequence

CCTGATTAGGCACCAACCTAAGCCATAATCCTGCCAAGCGACTCGGTTCGATCTGGTCGCCAGATCAGGGAGTTGAGCCATGGCAGGCAACCGCATCCAA
TTTCAGAAGGGTCTCTCGGAGGCCCGTTTCGCGACCCTCTACGGGACGGAAGACCTGTGCCGGGAAGCGATCGCGCAGTGGCGCTGGCCCGATGGGTTCG
TCTGTCCGGCGTGCGGCTCGTCGGATCATTGCATCGTTGGCCCGCGCAAGCTCTTTCAGTGCAACGCGTGCCGGCGGCAGACGTCGCTGACGGCGGGCAC
GATCTTCAACGCCACCAAGGTGCCGCTGACGACCTGGTTCCGCGCCATGTATCTCATCACGCAGACCAAGCAGGGCATCTCCTCGATCGAGCTTGGCCGA
CGCCTCGGGGTGACGCAGACGACCGCCTGGAAGATCAAGACCAAGCTCGCCGAGGTGATGCGCATCGCAGGCGAGAAGGACAAGCTCTCGGGGCGCATCG
AGATGGACGATGCCTATCTCGGCGGCGAGCGGGGCGGCGGCAAGACGGGTCGCGGCAGCCCCGGCAAAAAGCCGATCGTCGTGGCGGTTCAAACCGATGA
GAAAGGCCGGCCGCGACGCATCAAACTCTCCCGCATTCCGCGTTTCAAGCGGGCCCGCGTGAAGAGCCTTGCCAAGCGCATCATCGCGCCGGGCGCGACG
GTCCTCACCGACGGGCTCGCCTGCTTCCGAGGGGTGGCCGACGCCGGCTATATCCATGTGGCGATTCCCACGGGCTCGGGCCGCAAGGCCGCTCGCCATC
CTGCCTTCAGGTGGGTCAACACAATGCTCGGCAACATCAAGAGCGCCATTACCGCAACGTACCGCGCGCTGCGCAAGAAGCACATGGTGCGCTACCTGGC
GGAGTTCGAATGGCGCTTCAACCACCGCTTCGATCTCGCCCAAATGATCCCGGCTCTCGGTCGTGCTGCCGTCGCCACCAAACCCGCCCCTTACTCGTGG
CTCAAGATGGCTGACTATGGTGCGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa801027+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAGNRIQFQKGLSEARFATLYGTEDLCREAIAQWRWPDGFVCPACGSSDHCIVGPRKLFQCNACRRQTSLTAGTIFNATKVPLTTWFRAMYLITQTKQGI
SSIELGRRLGVTQTTAWKIKTKLAEVMRIAGEKDKLSGRIEMDDAYLGGERGGGKTGRGSPGKKPIVVAVQTDEKGRPRRIKLSRIPRFKRARVKSLAKR
IIAPGATVLTDGLACFRGVADAGYIHVAIPTGSGRKAARHPAFRWVNTMLGNIKSAITATYRALRKKHMVRYLAEFEWRFNHRFDLAQMIPALGRAAVAT
KPAPYSWLKMADYGA

 

Blast result :
Comments
ISAlba1 is 71% aa similar to ISAcmu1.
References
1] ISfinder annotation (2017)
2] Bagnoud,A., Chourey,K., Hettich,R.L., De Bruijn,I., Andersson,A.F., Leupin,O.X., Schwyn,B. and Bernier-Latmani,R. (2015) Direct GenBank submission.