ISBf1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U05888 | ND | Bacteroides fragilis | Bacteroides fragilis CS30 Bacteroides fragilis RBF103 |
DNA section
IS Length : 2787 bp
Ends
IR Length : 6/8
IRL : TGTGGGCCATCCATTATCAATAGCCACGTTTACCATCGTCCGCAGGGGAG
IRR : TGTGGCGCGCAAATTTGTGCGCCACTTTTTTAGGTAATTTAGTATATCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTGGGCCATCCATTATCAATAGCCACGTTTACCATCGTCCGCAGGGGAGCCGTATAAATCCATACCGTATTATTACAACAATGCCTGTCGGTCCGTAGA
TACATATCAAAGTCTTTGATAAACGCCAATGTCAGTTCCTTCAGCGCAATATCTTTCAAATGTAACCGTTGGTAAAGAAAATCTTTCAGATGATTATACA
CGGTCACATACTTCTCATACGTCTTGACAGATTTCATCTTTTTCATCGCATTGTAGATTGTAACTTTACCAGTGGAAAAACGGAAAGTCGTATGTCTCAC
TTTTACAGGGGCATGATTTTTCTGCCTTGCGGGAATGTCTATCTTTGCCGGCTCAACAAAGAGACAGACACCGGAATGGAAACAAAGAGCCAAAATTTAA
AAGACAAACTGTATATGTGGTACAAGGTAAGAGAACTTCAGTCGAAAGGACTGAACAAGACACAGATCGGAAAATATCTGGGCGTGGACCGGAGCACTGT
GCGGAGATATCTGCGGACAAGCCGGGAAGAGCTTTTCAGAAAGCAGAACTCCCACCGGGAGTATGAACTCAAGTTGGGAAAGTACGAGGAGTATGTACGG
GGTACACTGGAAGAATACCCGTACATATCGGCCGCCCGTATGCATGACTGGCTCAAGGAATGCTATCCGGATTTTCCTCGGGTATGTGACAAGACCGTAT
TCAATTTTGTGGACAGGATACGCAGAAAGTACGGTATCGGGAAAAAATCTGAGGTCCGGATACGGCGTGATTACGAAAAGTTGCCTGAGACCCCCTACGG
GGAATATGCCCAGGCGGATTTCGGGGAGAAGTGGATACCTGTGAAGAATGGCGGAAGCACGAAGGTTTACTTCTTCGCCATCGTACTGACGCGTTCCCGC
TATAAGTTTATCCATTTCAGCCGTCGTCCTTTTGATACGGAGCTTGCGATTTATGCCCATGAACTGGCCTTTCAGTATTTCGGGGGCAGGCCTGAAAAGA
TTATCTATGACCAGGACAGGGTGCTTATAGCACGCGAGAACCTGGGAGATTTGATACTGACCGGGAAATTTCAGTCATTCATAAAAGAGCAGCATTTCCA
GCCGGTATTTTGTCGCAGGTCAGACCCTGAGTCGAAGGGGAAAGTGGAGAATGTGGTGAAGTATGTGAAAGAGAATTTTCTGGTGGCCCGTGTTTTACAG
GATATCCCCGGGCTGAATGAGGAAGCCCGGAAATGGCTTGAAAGGACGGGTAATGGAAAAGTGCACGGGACCACCCGCCTGGTCCCCTCTGAGGAGTTCG
CTGTGGAGAAAGGATACCTGAAACCTTATTATGGTCTACCGCAGCCACCACAGGAGCAGATGAAGGAGTATCACGTGCGTAAGGACAACACGGTCCAGTA
TAGGGGGAATTATTACAGCCTGCCATGCGGCACTTACCGGAGCGGGCAGACAAGGGTCTGGTTGCAGGAAACTGAGGGGTATGTGGAACTGTACAGCAAG
GAGACGGGAAAAATCGTCGCCAGACATCCCCTCTGTACCCGAAAAGGAAAAACGATTTATGACGAAAGACACAGAAGGCCCAAGAGTATTGGGGCACAGA
AGCTGGCCGAACGTATCCTTGTTTATGTATCCGGAAACCGGGAGGTCGCCTTGTGGATGGAGAACCTCAAGAGAAAGAAAGAACGCTATTACAAGGATAA
TCTGGAAGTGGTTCTGCACATGATGCCGGGCTATGACAAGGATATCTTGATAGAGGCAGTGCACATATGTCTTGATAAGGGCATCTACAATGGCGATTCC
GTTAAAAGCCTGTGTGAACACGTGCACAGGAGACGGAATAAAGAAACTGAAACAGACAGGACGGACAGTTGCCCGCCGCGACAAACCGGGCTGATACAGT
CTTACAATGAAATCTTCCATGGCTATGATAAAACATAAAAAGGAGCTGGTTGAATATGCACGGCACCTGAAACTACCGAACTTGGCAGAACATGTGGGTG
TGATACTTCATGAAGCACAGGAGAAGCAACTGACCTATTCGGAGTTCCTGGCGAATTGTCTTGCCAGGGAAATCCAGGGCAGAGAAAGGAAAAGCTACCT
GACACGGTTGAAACTCTCCGGACTCCCCGCCAAATACGATCTGGACCTGTACGACTATGACAGGGCGGAAGGAATGGATAACAGGAGGCTGCGCGAACTG
CGTGAGCTGGTATGGGTGAACCAGGCATACAATCTTCTCCTGGTAGGCCCTTCCGGAACCGGCAAGACCTTTATAGCCGCCGGACTCGTGTATGAAGCCG
TAAAAGCGGGATACGAAGCATATCTGATGACACTGGAGGAGCTGCTCACATGCCTGAAAACGAAAGAGGTCTCCGCACATGCGATGAAAACATACAAGCG
GATCATGAAGGCCCGGCTGCTGGCCATAGACGATGCCACACTGTTCCCTTTGAAAAGAGAAGAAGCCGTGTTGCTGTTCAAACTGGTCAATGACTTCCAG
GAAAGGACATCACTCATCATCACGGCAAACAAGGCACTCACCCGTTGGCTGGAAACATTGGAGGATGAAGCGGTCACAGCCGCCTTGCTTGACAGGCTGC
TCTACTGCTGCGAGATTATCAGGCTCGGAGGAACAAGCTATCGCATGCAAAACAGGAAAACAATTTTTAGCAACCAAAACACGGATATAGGCACGTAAAA
AGAGTTAAGGAAAGTGAAGCATCTTCGATGCTGGAGTGGGATATACTAAATTACCTAAAAAAGTGGCGCACAAATTTGCGCGCCACA
TACATATCAAAGTCTTTGATAAACGCCAATGTCAGTTCCTTCAGCGCAATATCTTTCAAATGTAACCGTTGGTAAAGAAAATCTTTCAGATGATTATACA
CGGTCACATACTTCTCATACGTCTTGACAGATTTCATCTTTTTCATCGCATTGTAGATTGTAACTTTACCAGTGGAAAAACGGAAAGTCGTATGTCTCAC
TTTTACAGGGGCATGATTTTTCTGCCTTGCGGGAATGTCTATCTTTGCCGGCTCAACAAAGAGACAGACACCGGAATGGAAACAAAGAGCCAAAATTTAA
AAGACAAACTGTATATGTGGTACAAGGTAAGAGAACTTCAGTCGAAAGGACTGAACAAGACACAGATCGGAAAATATCTGGGCGTGGACCGGAGCACTGT
GCGGAGATATCTGCGGACAAGCCGGGAAGAGCTTTTCAGAAAGCAGAACTCCCACCGGGAGTATGAACTCAAGTTGGGAAAGTACGAGGAGTATGTACGG
GGTACACTGGAAGAATACCCGTACATATCGGCCGCCCGTATGCATGACTGGCTCAAGGAATGCTATCCGGATTTTCCTCGGGTATGTGACAAGACCGTAT
TCAATTTTGTGGACAGGATACGCAGAAAGTACGGTATCGGGAAAAAATCTGAGGTCCGGATACGGCGTGATTACGAAAAGTTGCCTGAGACCCCCTACGG
GGAATATGCCCAGGCGGATTTCGGGGAGAAGTGGATACCTGTGAAGAATGGCGGAAGCACGAAGGTTTACTTCTTCGCCATCGTACTGACGCGTTCCCGC
TATAAGTTTATCCATTTCAGCCGTCGTCCTTTTGATACGGAGCTTGCGATTTATGCCCATGAACTGGCCTTTCAGTATTTCGGGGGCAGGCCTGAAAAGA
TTATCTATGACCAGGACAGGGTGCTTATAGCACGCGAGAACCTGGGAGATTTGATACTGACCGGGAAATTTCAGTCATTCATAAAAGAGCAGCATTTCCA
GCCGGTATTTTGTCGCAGGTCAGACCCTGAGTCGAAGGGGAAAGTGGAGAATGTGGTGAAGTATGTGAAAGAGAATTTTCTGGTGGCCCGTGTTTTACAG
GATATCCCCGGGCTGAATGAGGAAGCCCGGAAATGGCTTGAAAGGACGGGTAATGGAAAAGTGCACGGGACCACCCGCCTGGTCCCCTCTGAGGAGTTCG
CTGTGGAGAAAGGATACCTGAAACCTTATTATGGTCTACCGCAGCCACCACAGGAGCAGATGAAGGAGTATCACGTGCGTAAGGACAACACGGTCCAGTA
TAGGGGGAATTATTACAGCCTGCCATGCGGCACTTACCGGAGCGGGCAGACAAGGGTCTGGTTGCAGGAAACTGAGGGGTATGTGGAACTGTACAGCAAG
GAGACGGGAAAAATCGTCGCCAGACATCCCCTCTGTACCCGAAAAGGAAAAACGATTTATGACGAAAGACACAGAAGGCCCAAGAGTATTGGGGCACAGA
AGCTGGCCGAACGTATCCTTGTTTATGTATCCGGAAACCGGGAGGTCGCCTTGTGGATGGAGAACCTCAAGAGAAAGAAAGAACGCTATTACAAGGATAA
TCTGGAAGTGGTTCTGCACATGATGCCGGGCTATGACAAGGATATCTTGATAGAGGCAGTGCACATATGTCTTGATAAGGGCATCTACAATGGCGATTCC
GTTAAAAGCCTGTGTGAACACGTGCACAGGAGACGGAATAAAGAAACTGAAACAGACAGGACGGACAGTTGCCCGCCGCGACAAACCGGGCTGATACAGT
CTTACAATGAAATCTTCCATGGCTATGATAAAACATAAAAAGGAGCTGGTTGAATATGCACGGCACCTGAAACTACCGAACTTGGCAGAACATGTGGGTG
TGATACTTCATGAAGCACAGGAGAAGCAACTGACCTATTCGGAGTTCCTGGCGAATTGTCTTGCCAGGGAAATCCAGGGCAGAGAAAGGAAAAGCTACCT
GACACGGTTGAAACTCTCCGGACTCCCCGCCAAATACGATCTGGACCTGTACGACTATGACAGGGCGGAAGGAATGGATAACAGGAGGCTGCGCGAACTG
CGTGAGCTGGTATGGGTGAACCAGGCATACAATCTTCTCCTGGTAGGCCCTTCCGGAACCGGCAAGACCTTTATAGCCGCCGGACTCGTGTATGAAGCCG
TAAAAGCGGGATACGAAGCATATCTGATGACACTGGAGGAGCTGCTCACATGCCTGAAAACGAAAGAGGTCTCCGCACATGCGATGAAAACATACAAGCG
GATCATGAAGGCCCGGCTGCTGGCCATAGACGATGCCACACTGTTCCCTTTGAAAAGAGAAGAAGCCGTGTTGCTGTTCAAACTGGTCAATGACTTCCAG
GAAAGGACATCACTCATCATCACGGCAAACAAGGCACTCACCCGTTGGCTGGAAACATTGGAGGATGAAGCGGTCACAGCCGCCTTGCTTGACAGGCTGC
TCTACTGCTGCGAGATTATCAGGCTCGGAGGAACAAGCTATCGCATGCAAAACAGGAAAACAATTTTTAGCAACCAAAACACGGATATAGGCACGTAAAA
AGAGTTAAGGAAAGTGAAGCATCTTCGATGCTGGAGTGGGATATACTAAATTACCTAAAAAAGTGGCGCACAAATTTGCGCGCCACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1749 bp | 582 aa | 190 | 1938 | + | No |
Chemistry : DDE
ORF sequence :
MIIHGHILLIRLDRFHLFHRIVDCNFTSGKTESRMSHFYRGMIFLPCGNVYLCRLNKETDTGMETKSQNLKDKLYMWYKVRELQSKGLNKTQIGKYLGVD
RSTVRRYLRTSREELFRKQNSHREYELKLGKYEEYVRGTLEEYPYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGKKSEVRIRRDYEKLPE
TPYGEYAQADFGEKWIPVKNGGSTKVYFFAIVLTRSRYKFIHFSRRPFDTELAIYAHELAFQYFGGRPEKIIYDQDRVLIARENLGDLILTGKFQSFIKE
QHFQPVFCRRSDPESKGKVENVVKYVKENFLVARVLQDIPGLNEEARKWLERTGNGKVHGTTRLVPSEEFAVEKGYLKPYYGLPQPPQEQMKEYHVRKDN
TVQYRGNYYSLPCGTYRSGQTRVWLQETEGYVELYSKETGKIVARHPLCTRKGKTIYDERHRRPKSIGAQKLAERILVYVSGNREVALWMENLKRKKERY
YKDNLEVVLHMMPGYDKDILIEAVHICLDKGIYNGDSVKSLCEHVHRRRNKETETDRTDSCPPRQTGLIQSYNEIFHGYDKT
RSTVRRYLRTSREELFRKQNSHREYELKLGKYEEYVRGTLEEYPYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGKKSEVRIRRDYEKLPE
TPYGEYAQADFGEKWIPVKNGGSTKVYFFAIVLTRSRYKFIHFSRRPFDTELAIYAHELAFQYFGGRPEKIIYDQDRVLIARENLGDLILTGKFQSFIKE
QHFQPVFCRRSDPESKGKVENVVKYVKENFLVARVLQDIPGLNEEARKWLERTGNGKVHGTTRLVPSEEFAVEKGYLKPYYGLPQPPQEQMKEYHVRKDN
TVQYRGNYYSLPCGTYRSGQTRVWLQETEGYVELYSKETGKIVARHPLCTRKGKTIYDERHRRPKSIGAQKLAERILVYVSGNREVALWMENLKRKKERY
YKDNLEVVLHMMPGYDKDILIEAVHICLDKGIYNGDSVKSLCEHVHRRRNKETETDRTDSCPPRQTGLIQSYNEIFHGYDKT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
792 bp | 263 aa | 1907 | 2698 | + | No |
AG : IS21 helper
ORF sequence :
MKSSMAMIKHKKELVEYARHLKLPNLAEHVGVILHEAQEKQLTYSEFLANCLAREIQGRERKSYLTRLKLSGLPAKYDLDLYDYDRAEGMDNRRLRELRE
LVWVNQAYNLLLVGPSGTGKTFIAAGLVYEAVKAGYEAYLMTLEELLTCLKTKEVSAHAMKTYKRIMKARLLAIDDATLFPLKREEAVLLFKLVNDFQER
TSLIITANKALTRWLETLEDEAVTAALLDRLLYCCEIIRLGGTSYRMQNRKTIFSNQNTDIGT
LVWVNQAYNLLLVGPSGTGKTFIAAGLVYEAVKAGYEAYLMTLEELLTCLKTKEVSAHAMKTYKRIMKARLLAIDDATLFPLKREEAVLLFKLVNDFQER
TSLIITANKALTRWLETLEDEAVTAALLDRLLYCCEIIRLGGTSYRMQNRKTIFSNQNTDIGT
Blast result :
Comments
ISBf1 is located 50 bp upstream the translation start codon of cepA, a chromosomal cephalosporinase gene, whose high expression level is apparently driven by an ISBf1 outward promoter. The exact limits of ISBf1 are unknown.
References
1] Rogers, M.B., Bennette, T.K., Payne, C.M., and Smith, C.J. (1994) J. Bacteriol. 176, 4376-4384.