ISDsi1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNJI01000012 | ND | Desulforhopalus singaporensis | Desulforhopalus singaporensis DSM 12130 |
DNA section
IS Length : 1060 bp
Ends
IR Length : 19/23
IRL : TCTGATTACCACTGATGTTCAGCTTATCAATTTTTTCCAGGGGAGTGTCA
IRR : TCTGATTACCACCAATCCTCAGCACGCCTTAACTGTCGCTCAGGAATTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTCTGCA | AAAGAAAA | AGGAGGCGAT | 8 |
DNA sequence
TCTGATTACCACTGATGTTCAGCTTATCAATTTTTTCCAGGGGAGTGTCACTATATGATACCCCGGGTATGTCATACTACCTCAAATTCAACTAGGAGGT
AGACATGGCGAAACGAAGCGAAATCCACTTTCAACAAGGTGTCAGTTTGCTGGACTTTCAATCAAAATATGGAACTGAGGAACAATGCCAGAAGCATCTG
TTCCAACTGAAATGGCCAAATGGATACTGCTGCCCCAGGTGTGCTCACAAGCAGTACTATTTTGTTCGATCTCGCTCTTTGTACCAGTGTCAAAATTGCC
GCTCCCAAACTTCGCTTATAAGCGGCACCATTTTCTCTTCCACTAAACTACCGCTAACCGTCTGGTTTCTTGCAATTTACCTGGTTAGTCAATCTAAAAA
AGGCATTTCATCTCTAAAGCTCATGCGTTTTCTCGGCATCTCCCAGAATGCAGCCATGCGACTGAAACATAAACTTCAAATGGTTATGAAACAGGCTGAT
GATGAAAAACCACTCAAAGGTTTCATTCAAGTTGATGACGTCTATTGGGGAGGCAAACATTCTGGGGGTAAACGCGGACGTGGTGCAGAAGGTAAAACTC
CCTTTATAGCTGCCCTCGAACGTAATGAAAAAGGAAACCCCCTTTTCATACGTTTCAGTCGTATTGGTGCCTTTACTATTGATCAGATTCAACGCTGGGG
GGAAAGACACCTCATCTCTCAATCTCTGGTTGTTTCAGATGGCCTTGCATGTTTTGCAGGTTTTCAAGCCATCAATCATAGCCATTTTTCAATTAATACT
ACCAGCCGATACAGAAATTCAGATTTCACTTTTTTTGACTGGCTCAACACAGTCATTGGCAATGTGAAAAACGCTATGTTGAGCACTTATCATGGCATCT
GCCACAGACATTTGCCACGTTACCTGGGTGAGTTTTGTTTTCGGTTCAATCGTCGTTTCAAACTGCCTATATTATTGAACTCTCTCATCTATTATTCTGT
TAAATCAAATCCAATTCCTGAGCGACAGTTAAGGCGTGCTGAGGATTGGTGGTAATCAGA
AGACATGGCGAAACGAAGCGAAATCCACTTTCAACAAGGTGTCAGTTTGCTGGACTTTCAATCAAAATATGGAACTGAGGAACAATGCCAGAAGCATCTG
TTCCAACTGAAATGGCCAAATGGATACTGCTGCCCCAGGTGTGCTCACAAGCAGTACTATTTTGTTCGATCTCGCTCTTTGTACCAGTGTCAAAATTGCC
GCTCCCAAACTTCGCTTATAAGCGGCACCATTTTCTCTTCCACTAAACTACCGCTAACCGTCTGGTTTCTTGCAATTTACCTGGTTAGTCAATCTAAAAA
AGGCATTTCATCTCTAAAGCTCATGCGTTTTCTCGGCATCTCCCAGAATGCAGCCATGCGACTGAAACATAAACTTCAAATGGTTATGAAACAGGCTGAT
GATGAAAAACCACTCAAAGGTTTCATTCAAGTTGATGACGTCTATTGGGGAGGCAAACATTCTGGGGGTAAACGCGGACGTGGTGCAGAAGGTAAAACTC
CCTTTATAGCTGCCCTCGAACGTAATGAAAAAGGAAACCCCCTTTTCATACGTTTCAGTCGTATTGGTGCCTTTACTATTGATCAGATTCAACGCTGGGG
GGAAAGACACCTCATCTCTCAATCTCTGGTTGTTTCAGATGGCCTTGCATGTTTTGCAGGTTTTCAAGCCATCAATCATAGCCATTTTTCAATTAATACT
ACCAGCCGATACAGAAATTCAGATTTCACTTTTTTTGACTGGCTCAACACAGTCATTGGCAATGTGAAAAACGCTATGTTGAGCACTTATCATGGCATCT
GCCACAGACATTTGCCACGTTACCTGGGTGAGTTTTGTTTTCGGTTCAATCGTCGTTTCAAACTGCCTATATTATTGAACTCTCTCATCTATTATTCTGT
TAAATCAAATCCAATTCCTGAGCGACAGTTAAGGCGTGCTGAGGATTGGTGGTAATCAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 105 | 1055 | + | No |
Chemistry : DDE
ORF sequence :
MAKRSEIHFQQGVSLLDFQSKYGTEEQCQKHLFQLKWPNGYCCPRCAHKQYYFVRSRSLYQCQNCRSQTSLISGTIFSSTKLPLTVWFLAIYLVSQSKKG
ISSLKLMRFLGISQNAAMRLKHKLQMVMKQADDEKPLKGFIQVDDVYWGGKHSGGKRGRGAEGKTPFIAALERNEKGNPLFIRFSRIGAFTIDQIQRWGE
RHLISQSLVVSDGLACFAGFQAINHSHFSINTTSRYRNSDFTFFDWLNTVIGNVKNAMLSTYHGICHRHLPRYLGEFCFRFNRRFKLPILLNSLIYYSVK
SNPIPERQLRRAEDWW
ISSLKLMRFLGISQNAAMRLKHKLQMVMKQADDEKPLKGFIQVDDVYWGGKHSGGKRGRGAEGKTPFIAALERNEKGNPLFIRFSRIGAFTIDQIQRWGE
RHLISQSLVVSDGLACFAGFQAINHSHFSINTTSRYRNSDFTFFDWLNTVIGNVKNAMLSTYHGICHRHLPRYLGEFCFRFNRRFKLPILLNSLIYYSVK
SNPIPERQLRRAEDWW
Blast result :
Comments
ISDsi1 is 70% aa similar to ISAwo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.