ISDsi1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNJI01000012 ND Desulforhopalus singaporensis
Desulforhopalus singaporensis DSM 12130
DNA section
IS Length : 1060 bp

Ends


IR Length : 19/23

IRL : TCTGATTACCACTGATGTTCAGCTTATCAATTTTTTCCAGGGGAGTGTCA
IRR : TCTGATTACCACCAATCCTCAGCACGCCTTAACTGTCGCTCAGGAATTGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTCTGCAAAAGAAAAAGGAGGCGAT8

DNA sequence

TCTGATTACCACTGATGTTCAGCTTATCAATTTTTTCCAGGGGAGTGTCACTATATGATACCCCGGGTATGTCATACTACCTCAAATTCAACTAGGAGGT
AGACATGGCGAAACGAAGCGAAATCCACTTTCAACAAGGTGTCAGTTTGCTGGACTTTCAATCAAAATATGGAACTGAGGAACAATGCCAGAAGCATCTG
TTCCAACTGAAATGGCCAAATGGATACTGCTGCCCCAGGTGTGCTCACAAGCAGTACTATTTTGTTCGATCTCGCTCTTTGTACCAGTGTCAAAATTGCC
GCTCCCAAACTTCGCTTATAAGCGGCACCATTTTCTCTTCCACTAAACTACCGCTAACCGTCTGGTTTCTTGCAATTTACCTGGTTAGTCAATCTAAAAA
AGGCATTTCATCTCTAAAGCTCATGCGTTTTCTCGGCATCTCCCAGAATGCAGCCATGCGACTGAAACATAAACTTCAAATGGTTATGAAACAGGCTGAT
GATGAAAAACCACTCAAAGGTTTCATTCAAGTTGATGACGTCTATTGGGGAGGCAAACATTCTGGGGGTAAACGCGGACGTGGTGCAGAAGGTAAAACTC
CCTTTATAGCTGCCCTCGAACGTAATGAAAAAGGAAACCCCCTTTTCATACGTTTCAGTCGTATTGGTGCCTTTACTATTGATCAGATTCAACGCTGGGG
GGAAAGACACCTCATCTCTCAATCTCTGGTTGTTTCAGATGGCCTTGCATGTTTTGCAGGTTTTCAAGCCATCAATCATAGCCATTTTTCAATTAATACT
ACCAGCCGATACAGAAATTCAGATTTCACTTTTTTTGACTGGCTCAACACAGTCATTGGCAATGTGAAAAACGCTATGTTGAGCACTTATCATGGCATCT
GCCACAGACATTTGCCACGTTACCTGGGTGAGTTTTGTTTTCGGTTCAATCGTCGTTTCAAACTGCCTATATTATTGAACTCTCTCATCTATTATTCTGT
TAAATCAAATCCAATTCCTGAGCGACAGTTAAGGCGTGCTGAGGATTGGTGGTAATCAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa1051055+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKRSEIHFQQGVSLLDFQSKYGTEEQCQKHLFQLKWPNGYCCPRCAHKQYYFVRSRSLYQCQNCRSQTSLISGTIFSSTKLPLTVWFLAIYLVSQSKKG
ISSLKLMRFLGISQNAAMRLKHKLQMVMKQADDEKPLKGFIQVDDVYWGGKHSGGKRGRGAEGKTPFIAALERNEKGNPLFIRFSRIGAFTIDQIQRWGE
RHLISQSLVVSDGLACFAGFQAINHSHFSINTTSRYRNSDFTFFDWLNTVIGNVKNAMLSTYHGICHRHLPRYLGEFCFRFNRRFKLPILLNSLIYYSVK
SNPIPERQLRRAEDWW

 

Blast result :
Comments
ISDsi1 is 70% aa similar to ISAwo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.