ISAcmu1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP012035 ND Acidiphilium multivorum
Acidiphilium multivorum AIU301
DNA section
IS Length : 1029 bp

Ends


IR Length : 21/28

IRL : CCTGCTTACCCATCTTGATCCGCTGATTCTGGCGCGGTACGAAACATGAA
IRR : CCTGCTTACCCATGAATCTCCGCCAATTTCAGTAGTCTGTAGGGCATTGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGGATACTCACAATATTAACCCTTTGCT8

DNA sequence

CCTGCTTACCCATCTTGATCCGCTGATTCTGGCGCGGTACGAAACATGAACGTGCTGGCATGATCGGGAGGTTTGGATGGCGCGCAACGCGGTGCAGTTT
CAGAAGGGGCTGAGCGAGGCAGAATTTGACCGGCTGTATGGCACCGAGGAACTGTGCCGGGCGGTCGTCATCAAGCTGCGGTGGCCGGATGGGTTTTCCT
GTCCCGTCTGCGGTGGCACGGCGCATAGTATCCATACCGCGCGCGGGTTGTTTCAGTGCACGCGCTGCCGTCGCCAGACCTCGCCGACCGCAGGGACGAT
CTTCGCGGCGACGAAATTGCCCCTGCGCACGTGGTTCCGCGCGATATACCACATGACGCAGAGCAAACAGGGGATCTCCTCGATCGAACTCGGACGGCGC
CTCGGCGTGCGGCAGACGACCGCGTGGATGCTCAAGCACAAGCTCCAGCAGGCGATGATGGAGCGTGACGGGCGCAAACGTCTGAAAGGGCGGGTCGAGA
TCGACGATGCGGTTCTCGGCGGTCAGCGCTCCGGCGGCAAGCGCGGACGCGGCGCGCCGGGCAAGACGCCGTTTGTCGCGGCGGTCGAGACGACCGAAGA
CGGCAAGCCGGTCCGGCTGAAACTGCGCCGGGTCGCGGGGTTCACCGGCCAGGCGATTTCACGCTTCGCGTTGCACAGTCTCGATCCTGCCTGCAACGTC
GTCAGCGATGGGTTGGCCTGCTTTCATCGGGTCGCCGACGCCGGCTGCGCGCACGAGGCGATCGTCACCGGAGGCGGTGCCGAAGCCGCGCGTCACCCGG
TGTTCCGATGGGTCAACACCACCCTGGGGAACATCAAGTCCGCGATCGTCGGCACCTACCGGGCGATCAGCAGCAAGCACGCGCCGCGATATCTCGCCGA
ATTCGAGTACCGCTATAATCGCCGATACGATCTCGCGAGTATGATCCCAAGGCTCGGATACGCTGTCATCCACGCGCCGCCAATGCCCTACAGACTACTG
AAATTGGCGGAGATTCATGGGTAAGCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa771024+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARNAVQFQKGLSEAEFDRLYGTEELCRAVVIKLRWPDGFSCPVCGGTAHSIHTARGLFQCTRCRRQTSPTAGTIFAATKLPLRTWFRAIYHMTQSKQGI
SSIELGRRLGVRQTTAWMLKHKLQQAMMERDGRKRLKGRVEIDDAVLGGQRSGGKRGRGAPGKTPFVAAVETTEDGKPVRLKLRRVAGFTGQAISRFALH
SLDPACNVVSDGLACFHRVADAGCAHEAIVTGGGAEAARHPVFRWVNTTLGNIKSAIVGTYRAISSKHAPRYLAEFEYRYNRRYDLASMIPRLGYAVIHA
PPMPYRLLKLAEIHG

 

Blast result :
Comments
ISAcmu1 is 71% aa similar to ISHch1.
References
1] ISfinder annotation (2017)
2] Narita-Yamada,S., Nakamura,S., Ito,N., Takarada,H., Katano,Y., Nakazawa,H., Hosoyama,A., Yamada,R. and Fujita,N. (2010) Direct GenBank submission.