ISEco2
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LXSJ01000005 | ND | Eikenella corrodens | Eikenella corrodens NML140207 |
DNA section
IS Length : 713 bp
Ends
IR Length : 19
IRL : GGGGCTGACGTAGATTAGCAGTCATGCTAGTCTACAAAAATGCAGATAAC
IRR : GGGGCTGACGTAGATTAGCCCTAAATTCCACACCACTCCCGCAGGATTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTCGCTCCACAAAATTTAA | TATAATTTTCAGGTAGCCTG | 0 |
DNA sequence
GGGGCTGACGTAGATTAGCAGTCATGCTAGTCTACAAAAATGCAGATAACCAATTGTAAATTAAGCAAGAGAGTTCAAAAGAAACTACTTGAATTTTTTG
TACTCCAAGTTACCGCCCGTTCCGCTGCCGATATTTTAGACATTCAGCCCAACTCCGCCATTCTGTTCTACCGCAAAATCCGTATGGTCATCAGCCATCA
TTTGGCCTTGGCTGCCGATGAGGTTTTCGAGGGGCCCGTCGAGTTGGACGAAAGCTATTTCGGCGGACGGCGTAAAGGCAGATGTGGTCGCGGTGCGGCA
GGAAAAGTGGTTGTGTTTGGCATTCTGAAACGCAACGGACGGGTCTATACCGTTGTGGTGGATCATGCCAAGTCTGAAACGTTACTTCCTGTCATCAAAA
AGAAAATCATGCCGGACAGCATTGTTTATACCGATAGTCTGAGCAGCTACGACAAGTTGGACGTGAGCGGTTTTATCCATCACCGCATCAACCATTCCAA
GGAATTTGCAGACCGTCAGAACCACATTAACGGCATTGAGAATTTTTGGAATCAGGCAAAACGCGTCTTACGTAAATATAACGGAATCGATCGCAAATCC
TTCCCGCTGTTCTTGAAAGAATGCGAATTTCGATTTAACTTCGGCACACCGTCCCAGCAGCTTAAAATCCTGCGGGAGTGGTGTGGAATTTAGGGCTAAT
CTACGTCAGCCCC
TACTCCAAGTTACCGCCCGTTCCGCTGCCGATATTTTAGACATTCAGCCCAACTCCGCCATTCTGTTCTACCGCAAAATCCGTATGGTCATCAGCCATCA
TTTGGCCTTGGCTGCCGATGAGGTTTTCGAGGGGCCCGTCGAGTTGGACGAAAGCTATTTCGGCGGACGGCGTAAAGGCAGATGTGGTCGCGGTGCGGCA
GGAAAAGTGGTTGTGTTTGGCATTCTGAAACGCAACGGACGGGTCTATACCGTTGTGGTGGATCATGCCAAGTCTGAAACGTTACTTCCTGTCATCAAAA
AGAAAATCATGCCGGACAGCATTGTTTATACCGATAGTCTGAGCAGCTACGACAAGTTGGACGTGAGCGGTTTTATCCATCACCGCATCAACCATTCCAA
GGAATTTGCAGACCGTCAGAACCACATTAACGGCATTGAGAATTTTTGGAATCAGGCAAAACGCGTCTTACGTAAATATAACGGAATCGATCGCAAATCC
TTCCCGCTGTTCTTGAAAGAATGCGAATTTCGATTTAACTTCGGCACACCGTCCCAGCAGCTTAAAATCCTGCGGGAGTGGTGTGGAATTTAGGGCTAAT
CTACGTCAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
654 bp | 217 aa | 40 | 693 | + | No |
Chemistry : DDE
ORF sequence :
MQITNCKLSKRVQKKLLEFFVLQVTARSAADILDIQPNSAILFYRKIRMVISHHLALAADEVFEGPVELDESYFGGRRKGRCGRGAAGKVVVFGILKRNG
RVYTVVVDHAKSETLLPVIKKKIMPDSIVYTDSLSSYDKLDVSGFIHHRINHSKEFADRQNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFN
FGTPSQQLKILREWCGI
RVYTVVVDHAKSETLLPVIKKKIMPDSIVYTDSLSSYDKLDVSGFIHHRINHSKEFADRQNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFN
FGTPSQQLKILREWCGI
Blast result :
Comments
ISEco2 is 90% aa similar to ISKor1.
References
1] ISfinder annotation (2017)
2] Bernier,A.-M. and Bernard,K. (2016) Direct GenBank submission.
2] Bernier,A.-M. and Bernard,K. (2016) Direct GenBank submission.