ISEco2

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LXSJ01000005 ND Eikenella corrodens
Eikenella corrodens NML140207
DNA section
IS Length : 713 bp

Ends


IR Length : 19

IRL : GGGGCTGACGTAGATTAGCAGTCATGCTAGTCTACAAAAATGCAGATAAC
IRR : GGGGCTGACGTAGATTAGCCCTAAATTCCACACCACTCCCGCAGGATTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCGCTCCACAAAATTTAATATAATTTTCAGGTAGCCTG0

DNA sequence

GGGGCTGACGTAGATTAGCAGTCATGCTAGTCTACAAAAATGCAGATAACCAATTGTAAATTAAGCAAGAGAGTTCAAAAGAAACTACTTGAATTTTTTG
TACTCCAAGTTACCGCCCGTTCCGCTGCCGATATTTTAGACATTCAGCCCAACTCCGCCATTCTGTTCTACCGCAAAATCCGTATGGTCATCAGCCATCA
TTTGGCCTTGGCTGCCGATGAGGTTTTCGAGGGGCCCGTCGAGTTGGACGAAAGCTATTTCGGCGGACGGCGTAAAGGCAGATGTGGTCGCGGTGCGGCA
GGAAAAGTGGTTGTGTTTGGCATTCTGAAACGCAACGGACGGGTCTATACCGTTGTGGTGGATCATGCCAAGTCTGAAACGTTACTTCCTGTCATCAAAA
AGAAAATCATGCCGGACAGCATTGTTTATACCGATAGTCTGAGCAGCTACGACAAGTTGGACGTGAGCGGTTTTATCCATCACCGCATCAACCATTCCAA
GGAATTTGCAGACCGTCAGAACCACATTAACGGCATTGAGAATTTTTGGAATCAGGCAAAACGCGTCTTACGTAAATATAACGGAATCGATCGCAAATCC
TTCCCGCTGTTCTTGAAAGAATGCGAATTTCGATTTAACTTCGGCACACCGTCCCAGCAGCTTAAAATCCTGCGGGAGTGGTGTGGAATTTAGGGCTAAT
CTACGTCAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
654 bp217 aa40693+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQITNCKLSKRVQKKLLEFFVLQVTARSAADILDIQPNSAILFYRKIRMVISHHLALAADEVFEGPVELDESYFGGRRKGRCGRGAAGKVVVFGILKRNG
RVYTVVVDHAKSETLLPVIKKKIMPDSIVYTDSLSSYDKLDVSGFIHHRINHSKEFADRQNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFN
FGTPSQQLKILREWCGI

 

Blast result :
Comments
ISEco2 is 90% aa similar to ISKor1.
References
1] ISfinder annotation (2017)
2] Bernier,A.-M. and Bernard,K. (2016) Direct GenBank submission.