ISPpi1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LNDJ01000072 | ND | Psychrobacter piscatorii | Psychrobacter piscatorii LQ58 |
DNA section
IS Length : 715 bp
Ends
IR Length : 21/23
IRL : GGGGCTGTAGTAGATAAGCACTATGCTAGACTACTTTTATGAAGATAAGC
IRR : GGGGCTGTAGTAGATAAGGATTAAATATCACACCATTTTCTCAGGATTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCCTAATAA | AAAACTAA | TCGTGATTGA | 8 |
DNA sequence
GGGGCTGTAGTAGATAAGCACTATGCTAGACTACTTTTATGAAGATAAGCCGTTGTAAACTAAGTAAAAAAGTACAGCGAAGGCTGTTAGAGTTTTTCAT
AGCTGAAGTGACTGCTAGAACAGCCGCAGATTTGCTTGATATTCAGCCTAATACTGCTGCACTTTTTTATCATAAAATAAGACTTGTGATAGATTACCAT
CTCTCATTAGAAGCTGATGAGCTTTTTGATGGTGAGGTCGAATTAGATGAAAGTTACTTTGGCGGTGTACGCAAAGGCAAAAGAGGTCGCGGGGCTGCTG
GTAAAACCGCTGTATTTGGGATTCTAAAACGAAACGGTAAGGTGTATACCATTGTCGTAGCAGACACCAAGAAGACCACGCTAATGCCTGTTATCAAGCG
TAAAATCAAGCCTGACAGCTTTGTTTATACGGATAGCTATCGAAGTTACAATGCATTAGATGTGAGCGAGTTTAAACATTTCAGAGTCAATCACTCTAAA
GAGTTCACTTGCGGTAAAAACAATCACATCAATGGCATTGAGAACTTCTGGAATCAGTCTAAACGAACACTCAGAAAGTATAATGGAATCGATAAGAAGA
ACTTCCATTTATTTTTAAAAGAGTGCGAGTTTAGATTTAACTATGGCTCACCATCTAATCAGCTGAAAATCCTGAGAAAATGGTGTGATATTTAATCCTT
ATCTACTACAGCCCC
AGCTGAAGTGACTGCTAGAACAGCCGCAGATTTGCTTGATATTCAGCCTAATACTGCTGCACTTTTTTATCATAAAATAAGACTTGTGATAGATTACCAT
CTCTCATTAGAAGCTGATGAGCTTTTTGATGGTGAGGTCGAATTAGATGAAAGTTACTTTGGCGGTGTACGCAAAGGCAAAAGAGGTCGCGGGGCTGCTG
GTAAAACCGCTGTATTTGGGATTCTAAAACGAAACGGTAAGGTGTATACCATTGTCGTAGCAGACACCAAGAAGACCACGCTAATGCCTGTTATCAAGCG
TAAAATCAAGCCTGACAGCTTTGTTTATACGGATAGCTATCGAAGTTACAATGCATTAGATGTGAGCGAGTTTAAACATTTCAGAGTCAATCACTCTAAA
GAGTTCACTTGCGGTAAAAACAATCACATCAATGGCATTGAGAACTTCTGGAATCAGTCTAAACGAACACTCAGAAAGTATAATGGAATCGATAAGAAGA
ACTTCCATTTATTTTTAAAAGAGTGCGAGTTTAGATTTAACTATGGCTCACCATCTAATCAGCTGAAAATCCTGAGAAAATGGTGTGATATTTAATCCTT
ATCTACTACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
657 bp | 218 aa | 39 | 695 | + | No |
Chemistry : DDE
ORF sequence :
MKISRCKLSKKVQRRLLEFFIAEVTARTAADLLDIQPNTAALFYHKIRLVIDYHLSLEADELFDGEVELDESYFGGVRKGKRGRGAAGKTAVFGILKRNG
KVYTIVVADTKKTTLMPVIKRKIKPDSFVYTDSYRSYNALDVSEFKHFRVNHSKEFTCGKNNHINGIENFWNQSKRTLRKYNGIDKKNFHLFLKECEFRF
NYGSPSNQLKILRKWCDI
KVYTIVVADTKKTTLMPVIKRKIKPDSFVYTDSYRSYNALDVSEFKHFRVNHSKEFTCGKNNHINGIENFWNQSKRTLRKYNGIDKKNFHLFLKECEFRF
NYGSPSNQLKILRKWCDI
Blast result :
Comments
ISPpi1 is 91% aa similar to ISEc69.
References
1] ISfinder annotation (2017)
2] Zhou,M., Dong,B. and Liu,Q. (2016) Genome Announc 4 (2).
2] Zhou,M., Dong,B. and Liu,Q. (2016) Genome Announc 4 (2).