ISPpi1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LNDJ01000072 ND Psychrobacter piscatorii
Psychrobacter piscatorii LQ58
DNA section
IS Length : 715 bp

Ends


IR Length : 21/23

IRL : GGGGCTGTAGTAGATAAGCACTATGCTAGACTACTTTTATGAAGATAAGC
IRR : GGGGCTGTAGTAGATAAGGATTAAATATCACACCATTTTCTCAGGATTTT

Insertion site


Left flankDirect repeatRight flankDR Length
ATCCTAATAAAAAACTAATCGTGATTGA8

DNA sequence

GGGGCTGTAGTAGATAAGCACTATGCTAGACTACTTTTATGAAGATAAGCCGTTGTAAACTAAGTAAAAAAGTACAGCGAAGGCTGTTAGAGTTTTTCAT
AGCTGAAGTGACTGCTAGAACAGCCGCAGATTTGCTTGATATTCAGCCTAATACTGCTGCACTTTTTTATCATAAAATAAGACTTGTGATAGATTACCAT
CTCTCATTAGAAGCTGATGAGCTTTTTGATGGTGAGGTCGAATTAGATGAAAGTTACTTTGGCGGTGTACGCAAAGGCAAAAGAGGTCGCGGGGCTGCTG
GTAAAACCGCTGTATTTGGGATTCTAAAACGAAACGGTAAGGTGTATACCATTGTCGTAGCAGACACCAAGAAGACCACGCTAATGCCTGTTATCAAGCG
TAAAATCAAGCCTGACAGCTTTGTTTATACGGATAGCTATCGAAGTTACAATGCATTAGATGTGAGCGAGTTTAAACATTTCAGAGTCAATCACTCTAAA
GAGTTCACTTGCGGTAAAAACAATCACATCAATGGCATTGAGAACTTCTGGAATCAGTCTAAACGAACACTCAGAAAGTATAATGGAATCGATAAGAAGA
ACTTCCATTTATTTTTAAAAGAGTGCGAGTTTAGATTTAACTATGGCTCACCATCTAATCAGCTGAAAATCCTGAGAAAATGGTGTGATATTTAATCCTT
ATCTACTACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
657 bp218 aa39695+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKISRCKLSKKVQRRLLEFFIAEVTARTAADLLDIQPNTAALFYHKIRLVIDYHLSLEADELFDGEVELDESYFGGVRKGKRGRGAAGKTAVFGILKRNG
KVYTIVVADTKKTTLMPVIKRKIKPDSFVYTDSYRSYNALDVSEFKHFRVNHSKEFTCGKNNHINGIENFWNQSKRTLRKYNGIDKKNFHLFLKECEFRF
NYGSPSNQLKILRKWCDI

 

Blast result :
Comments
ISPpi1 is 91% aa similar to ISEc69.
References
1] ISfinder annotation (2017)
2] Zhou,M., Dong,B. and Liu,Q. (2016) Genome Announc 4 (2).