ISfinder Mirror Site

ISAcpa1

Family IS1595
Group IS1016

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
APOL01000014	ND	Acinetobacter parvus	Acinetobacter parvus NIPH 1103

DNA section

IS Length : 711 bp

Ends

IR Length : 17/18

IRL : GGGGCTGTAGTAGATTAGCCTTGTGATAATCTACTTTTATGAAGATAACT
IRR : GGGGCTGTAGTAGATAAGGTTAAATATCAGTCCAATTTAATAGTGTTTTC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
CCATCAGTTA	TTATTTTA	AATAAAGAAA	8

DNA sequence

GGGGCTGTAGTAGATTAGCCTTGTGATAATCTACTTTTATGAAGATAACTAGATGTAAATTAAATAGAAAAATTCAAATAAGGTTATTAGAGTTTTTCAT
TGCCGAAGTTACCGCTAGAACTGCTGCTAATTTATTGGGAATTCAACCTAATTCCGCAGCATTGTTCTATAGGAAAATTCGTCAAATCATTATGTTTCAC
CTTGACCAAGATGCCATTGAAGTGTTTCAAGGACAGATCGAATTGGATGAAAGCTATTTTGGTGGAGTGCGTAAAGGAAAGCGTGGTAGAGGTGCTGCTG
GTAAAGTGATTGTTTTTGGTTTACTCAAGCGCAATGGTAAAGTCTATACGGTCATTGTACCTGATACTAAATCGAGCACCCTAATGCCTGTAATATCAAA
TAAAACCACTCCTGATAGCGTTGTTTATAAAGATCATTGGCATAGTTATAATGCTTTGGATGTTGCAGGATTTAGTCACTATAGAATCAATCATTCAAGC
AATTTTGTTGATGGTCAAAATCATATCAATGGAATTGAAAACTTTTGGAATCAGGCAAAAAGAGTGCTTCGAAAATACAATGGTATTGACCGAAATGCCT
TTTCATTGTTTATTAAAGAATGTGAGTTTCGATTTAATTATGGCAGCCCAAAGCAACAGTTGAAAACACTATTAAATTGGACTGATATTTAACCTTATCT
ACTACAGCCCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
654 bp	217 aa	39	692	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKITRCKLNRKIQIRLLEFFIAEVTARTAANLLGIQPNSAALFYRKIRQIIMFHLDQDAIEVFQGQIELDESYFGGVRKGKRGRGAAGKVIVFGLLKRNG
KVYTVIVPDTKSSTLMPVISNKTTPDSVVYKDHWHSYNALDVAGFSHYRINHSSNFVDGQNHINGIENFWNQAKRVLRKYNGIDRNAFSLFIKECEFRFN
YGSPKQQLKTLLNWTDI

Blast result :

Comments

ISAcpa1 is 83% aa similar to ISEc69.

References

1] ISfinder annotation (2017)
2] Cerqueira,G., Feldgarden,M., Courvalin,P., Perichon,B., Grillot-Courvalin,C., Clermont,D., Rocha,E., Yoon,E.-J., Nemec,A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2013) Direct GenBank submission.