ISfinder Mirror Site

ISAbe5

Family IS1595
Group IS1016

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
APPK01000036	ND	Acinetobacter bereziniae	Acinetobacter bereziniae NIPH 3

DNA section

IS Length : 712 bp

Ends

IR Length : 17/18

IRL : GGGGCTGTACTAGATTAGTAGTGTGCTAATCTATGAAAATGAAGCTAACC
IRR : GGGGCTGTACTAGATAAGGTTTAAATTCCAGTCCAAAATCGCAAAATTTT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
AAAGGTTTTT	TAAATCAT	TTTATAAAGT	8

DNA sequence

GGGGCTGTACTAGATTAGTAGTGTGCTAATCTATGAAAATGAAGCTAACCAATTGTAAATTAAATAAGAAAACTCAATTAAAACTACTCGAGTTTTTCGT
GCTCGGTGTAACAGCAAGAGCTGCTGCTGATTTATTAGAAATTCATCATAATTCGGCAGCTCTTTTCTTTACTAAAGTTCGTAAAATTATTGCTTATTAT
TTAGAGATAGAAGCTCTCGAAATATTTGATGGTGAGATTGAGTTAGATGAAAGCTATTTTGGCGGCACTCGTAAAGGTAAGCGTGGTCGTGGTGCTGCTG
ATAAAATGATTGTTTTTGGATTATTAAAGCGAAATGCAAAGGTATATACCGTTGTTGTTCCAGACACTAAATCCAGTACCTTAATGCCTGTAATTGCAAA
GAAAATAACACCTGACAGCATTGTCTATACTGATCAATGGCGTAGTTACAATGCTCTAGATGTTGCAGGGTTCTGCCATCATAGAATTAACCATTCTACT
CACTTTGCAAATGGCAAGAATCATATTAATGGAATCGAAAATTTTTGGAATCAAGCGAAAAGAATACTGAGAAAATATAATGGTATTCCGAAAGAATCAT
TCCCCTTGTTTTTGAAAGAATGCGAGTTTAGATTTAATTATGGAAGTCCAAAACAACAATTGAAAATTTTGCGATTTTGGACTGGAATTTAAACCTTATC
TAGTACAGCCCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
660 bp	219 aa	33	692	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKMKLTNCKLNKKTQLKLLEFFVLGVTARAAADLLEIHHNSAALFFTKVRKIIAYYLEIEALEIFDGEIELDESYFGGTRKGKRGRGAADKMIVFGLLKR
NAKVYTVVVPDTKSSTLMPVIAKKITPDSIVYTDQWRSYNALDVAGFCHHRINHSTHFANGKNHINGIENFWNQAKRILRKYNGIPKESFPLFLKECEFR
FNYGSPKQQLKILRFWTGI

Blast result :

Comments

ISAbe5 is 85% aa similar to ISEc69.

References

1] ISfinder annotation (2017)
2] Cerqueira,G., Feldgarden,M., Courvalin,P., Perichon,B., Grillot-Courvalin,C., Clermont,D., Rocha,E., Yoon,E.-J., Nemec,A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2013) Direct GenBank submission.