ISPlu21
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JXSK01000009 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. luminescens DSM 3368 |
DNA section
IS Length : 717 bp
Ends
IR Length : 16
IRL : GGGGCTGTCCTAGATAAGTAATTTGATCTAGGATATCCAAATGAGAAAAA
IRR : GGGGCTGTCCTAGATAGCGATTATATTTTTCCCTTAACTATTTGTTTTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTATGATA | TAAAATTA | ATAGTAACCA | 8 |
DNA sequence
GGGGCTGTCCTAGATAAGTAATTTGATCTAGGATATCCAAATGAGAAAAAGTCGGATTAGCCAATACAAGCAAAAACGTCTTCAGGAGCTCTTTGTGGCA
GGGGCTACAGCTCGCACTGCGGCTGAGTTAGTGGGGGTCAACAAAACGACTTCAGCTTACTATTTTCACCGCCTCAGAGTTCTTATCGCTGATTATGTCG
ATGAACACTCCATGTTTGAAGGTGAAGTCGAGATAGACGAAAGCTATTTCGGGGGTAAACGTAAGGGAAAACGCGGGCGAGGTTCAGCCGGAAAAGTCCC
TGTTTTCGGGCTTCTCAAGCGAGGTGGTAAGGTTTACACCCGCCTAATACCTAACGCCAAATCCGATACTTTGATTCCGATAATCACGGCGAAAATTAAG
CCTGACAGCCTAGTCTACACAGACAATTTTGCCAGCTATGATGTGCTGGACGTGTCCGATTTTAAACACTATCGAATTAACCATAGCACGGAGTTTGTAG
ACGCTAAAAATGGCCAAAACCATATCAATGGGATAGAGAACTTTTGGAACCAAGCCAAACGTCATCTGCGTAAATTTAATGGCATACCAAAGGAACATTT
TGAGTTCTTTCTCAAGGAATGTGAGTGGAGATTTAATACACCGGGTGTAAAAGACCAATTACATATTCTAAAACAAATAGTTAAGGGAAAAATATAATCG
CTATCTAGGACAGCCCC
GGGGCTACAGCTCGCACTGCGGCTGAGTTAGTGGGGGTCAACAAAACGACTTCAGCTTACTATTTTCACCGCCTCAGAGTTCTTATCGCTGATTATGTCG
ATGAACACTCCATGTTTGAAGGTGAAGTCGAGATAGACGAAAGCTATTTCGGGGGTAAACGTAAGGGAAAACGCGGGCGAGGTTCAGCCGGAAAAGTCCC
TGTTTTCGGGCTTCTCAAGCGAGGTGGTAAGGTTTACACCCGCCTAATACCTAACGCCAAATCCGATACTTTGATTCCGATAATCACGGCGAAAATTAAG
CCTGACAGCCTAGTCTACACAGACAATTTTGCCAGCTATGATGTGCTGGACGTGTCCGATTTTAAACACTATCGAATTAACCATAGCACGGAGTTTGTAG
ACGCTAAAAATGGCCAAAACCATATCAATGGGATAGAGAACTTTTGGAACCAAGCCAAACGTCATCTGCGTAAATTTAATGGCATACCAAAGGAACATTT
TGAGTTCTTTCTCAAGGAATGTGAGTGGAGATTTAATACACCGGGTGTAAAAGACCAATTACATATTCTAAAACAAATAGTTAAGGGAAAAATATAATCG
CTATCTAGGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
657 bp | 218 aa | 41 | 697 | + | No |
Chemistry : DDE
ORF sequence :
MRKSRISQYKQKRLQELFVAGATARTAAELVGVNKTTSAYYFHRLRVLIADYVDEHSMFEGEVEIDESYFGGKRKGKRGRGSAGKVPVFGLLKRGGKVYT
RLIPNAKSDTLIPIITAKIKPDSLVYTDNFASYDVLDVSDFKHYRINHSTEFVDAKNGQNHINGIENFWNQAKRHLRKFNGIPKEHFEFFLKECEWRFNT
PGVKDQLHILKQIVKGKI
RLIPNAKSDTLIPIITAKIKPDSLVYTDNFASYDVLDVSDFKHYRINHSTEFVDAKNGQNHINGIENFWNQAKRHLRKFNGIPKEHFEFFLKECEWRFNT
PGVKDQLHILKQIVKGKI
Blast result :
Comments
ISPlu21 is 82% aa similar to ISHpa1.
References
1] ISfinder annotation (2017)
2] Kwak,Y. and Shin,J.-H. (2015) Direct GenBank submission.
2] Kwak,Y. and Shin,J.-H. (2015) Direct GenBank submission.