ISPlu21

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JXSK01000009 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. luminescens DSM 3368
DNA section
IS Length : 717 bp

Ends


IR Length : 16

IRL : GGGGCTGTCCTAGATAAGTAATTTGATCTAGGATATCCAAATGAGAAAAA
IRR : GGGGCTGTCCTAGATAGCGATTATATTTTTCCCTTAACTATTTGTTTTAG

Insertion site


Left flankDirect repeatRight flankDR Length
AATTATGATATAAAATTAATAGTAACCA8

DNA sequence

GGGGCTGTCCTAGATAAGTAATTTGATCTAGGATATCCAAATGAGAAAAAGTCGGATTAGCCAATACAAGCAAAAACGTCTTCAGGAGCTCTTTGTGGCA
GGGGCTACAGCTCGCACTGCGGCTGAGTTAGTGGGGGTCAACAAAACGACTTCAGCTTACTATTTTCACCGCCTCAGAGTTCTTATCGCTGATTATGTCG
ATGAACACTCCATGTTTGAAGGTGAAGTCGAGATAGACGAAAGCTATTTCGGGGGTAAACGTAAGGGAAAACGCGGGCGAGGTTCAGCCGGAAAAGTCCC
TGTTTTCGGGCTTCTCAAGCGAGGTGGTAAGGTTTACACCCGCCTAATACCTAACGCCAAATCCGATACTTTGATTCCGATAATCACGGCGAAAATTAAG
CCTGACAGCCTAGTCTACACAGACAATTTTGCCAGCTATGATGTGCTGGACGTGTCCGATTTTAAACACTATCGAATTAACCATAGCACGGAGTTTGTAG
ACGCTAAAAATGGCCAAAACCATATCAATGGGATAGAGAACTTTTGGAACCAAGCCAAACGTCATCTGCGTAAATTTAATGGCATACCAAAGGAACATTT
TGAGTTCTTTCTCAAGGAATGTGAGTGGAGATTTAATACACCGGGTGTAAAAGACCAATTACATATTCTAAAACAAATAGTTAAGGGAAAAATATAATCG
CTATCTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
657 bp218 aa41697+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSRISQYKQKRLQELFVAGATARTAAELVGVNKTTSAYYFHRLRVLIADYVDEHSMFEGEVEIDESYFGGKRKGKRGRGSAGKVPVFGLLKRGGKVYT
RLIPNAKSDTLIPIITAKIKPDSLVYTDNFASYDVLDVSDFKHYRINHSTEFVDAKNGQNHINGIENFWNQAKRHLRKFNGIPKEHFEFFLKECEWRFNT
PGVKDQLHILKQIVKGKI

 

Blast result :
Comments
ISPlu21 is 82% aa similar to ISHpa1.
References
1] ISfinder annotation (2017)
2] Kwak,Y. and Shin,J.-H. (2015) Direct GenBank submission.