ISPssp3
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012969 | ND | Psychrobacter sp. | Psychrobacter sp. AntiMn-1 |
DNA section
IS Length : 708 bp
Ends
IR Length : 19/20
IRL : GGGGCTGTCCTAGATAAGTAAAATTATTTAGGATAGCACTATGAGAAAGA
IRR : GGGGCTGTCCTAGATAACTAGCTCAAACCCTGTTTAACCCATTGTTTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCATCCATAGGCTCAAGTAA | AAAATGACCAAACCTAATCC | 0 |
DNA sequence
GGGGCTGTCCTAGATAAGTAAAATTATTTAGGATAGCACTATGAGAAAGAGTAAACTAAGTTGGTATAAACAAAACAGACTCATCGAGCTATTTGTTGCC
GGTTCTACCGCGAGAACAGCAGCAAGCTTAGTTGGTGTTAATAAAACCACAGCCAGTTATTACTTTCATAGGCTAAGACTGCTTATTTACGAGAATAGTC
AAGACCCTGGTCTATTTGAAGGCGAAATCGAAGTAGACGAATCATACTTTGGTGGCACTCGTAAAGGCAAGCGAGGGCGAGGTGCTGGTAGCAAAGTGCC
CGTGTTTGGTCTATTAAAGCGTAATGGCAAGGTCTACGCTTGTATTATACCCAATGCTAAAGCAGATACTTTGATCCCCATTATAAGAGAAAAAGTGAAG
CCTGATAGCATTGTTTATACTGACTCATTTAAAAGCTATAACGCATTAGATGTCAGTGAGTTTACTCATTATCGTATTAACCACTCCAAAACCTTTGTTA
ATGATAAGAATCATATTAACGGTATAGAGAACTTTTGGAACCAAGCTAAACGGCATCTACGTAAGTTTAACGGAGTTCCAAAAGAGCATTTTCACCTTTA
TTTAAAGGAATGTGAGTGGCGTTTTAATCACAGTGACCCAAAGTCGCAATTACTACAATTAAAACAATGGGTTAAACAGGGTTTGAGCTAGTTATCTAGG
ACAGCCCC
GGTTCTACCGCGAGAACAGCAGCAAGCTTAGTTGGTGTTAATAAAACCACAGCCAGTTATTACTTTCATAGGCTAAGACTGCTTATTTACGAGAATAGTC
AAGACCCTGGTCTATTTGAAGGCGAAATCGAAGTAGACGAATCATACTTTGGTGGCACTCGTAAAGGCAAGCGAGGGCGAGGTGCTGGTAGCAAAGTGCC
CGTGTTTGGTCTATTAAAGCGTAATGGCAAGGTCTACGCTTGTATTATACCCAATGCTAAAGCAGATACTTTGATCCCCATTATAAGAGAAAAAGTGAAG
CCTGATAGCATTGTTTATACTGACTCATTTAAAAGCTATAACGCATTAGATGTCAGTGAGTTTACTCATTATCGTATTAACCACTCCAAAACCTTTGTTA
ATGATAAGAATCATATTAACGGTATAGAGAACTTTTGGAACCAAGCTAAACGGCATCTACGTAAGTTTAACGGAGTTCCAAAAGAGCATTTTCACCTTTA
TTTAAAGGAATGTGAGTGGCGTTTTAATCACAGTGACCCAAAGTCGCAATTACTACAATTAAAACAATGGGTTAAACAGGGTTTGAGCTAGTTATCTAGG
ACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
651 bp | 216 aa | 41 | 691 | + | No |
Chemistry : DDE
ORF sequence :
MRKSKLSWYKQNRLIELFVAGSTARTAASLVGVNKTTASYYFHRLRLLIYENSQDPGLFEGEIEVDESYFGGTRKGKRGRGAGSKVPVFGLLKRNGKVYA
CIIPNAKADTLIPIIREKVKPDSIVYTDSFKSYNALDVSEFTHYRINHSKTFVNDKNHINGIENFWNQAKRHLRKFNGVPKEHFHLYLKECEWRFNHSDP
KSQLLQLKQWVKQGLS
CIIPNAKADTLIPIIREKVKPDSIVYTDSFKSYNALDVSEFTHYRINHSKTFVNDKNHINGIENFWNQAKRHLRKFNGVPKEHFHLYLKECEWRFNHSDP
KSQLLQLKQWVKQGLS
Blast result :
Comments
ISPssp3 is 88% aa similar to ISFtu6.
References
1] ISfinder annotation (2017)
2] Chen,J., Yang,J., Jing,X. and Zhu,S. (2015) Direct GenBank submission.
2] Chen,J., Yang,J., Jing,X. and Zhu,S. (2015) Direct GenBank submission.