ISPssp3

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP012969 ND Psychrobacter sp.
Psychrobacter sp. AntiMn-1
DNA section
IS Length : 708 bp

Ends


IR Length : 19/20

IRL : GGGGCTGTCCTAGATAAGTAAAATTATTTAGGATAGCACTATGAGAAAGA
IRR : GGGGCTGTCCTAGATAACTAGCTCAAACCCTGTTTAACCCATTGTTTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TCATCCATAGGCTCAAGTAAAAAATGACCAAACCTAATCC0

DNA sequence

GGGGCTGTCCTAGATAAGTAAAATTATTTAGGATAGCACTATGAGAAAGAGTAAACTAAGTTGGTATAAACAAAACAGACTCATCGAGCTATTTGTTGCC
GGTTCTACCGCGAGAACAGCAGCAAGCTTAGTTGGTGTTAATAAAACCACAGCCAGTTATTACTTTCATAGGCTAAGACTGCTTATTTACGAGAATAGTC
AAGACCCTGGTCTATTTGAAGGCGAAATCGAAGTAGACGAATCATACTTTGGTGGCACTCGTAAAGGCAAGCGAGGGCGAGGTGCTGGTAGCAAAGTGCC
CGTGTTTGGTCTATTAAAGCGTAATGGCAAGGTCTACGCTTGTATTATACCCAATGCTAAAGCAGATACTTTGATCCCCATTATAAGAGAAAAAGTGAAG
CCTGATAGCATTGTTTATACTGACTCATTTAAAAGCTATAACGCATTAGATGTCAGTGAGTTTACTCATTATCGTATTAACCACTCCAAAACCTTTGTTA
ATGATAAGAATCATATTAACGGTATAGAGAACTTTTGGAACCAAGCTAAACGGCATCTACGTAAGTTTAACGGAGTTCCAAAAGAGCATTTTCACCTTTA
TTTAAAGGAATGTGAGTGGCGTTTTAATCACAGTGACCCAAAGTCGCAATTACTACAATTAAAACAATGGGTTAAACAGGGTTTGAGCTAGTTATCTAGG
ACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa41691+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSKLSWYKQNRLIELFVAGSTARTAASLVGVNKTTASYYFHRLRLLIYENSQDPGLFEGEIEVDESYFGGTRKGKRGRGAGSKVPVFGLLKRNGKVYA
CIIPNAKADTLIPIIREKVKPDSIVYTDSFKSYNALDVSEFTHYRINHSKTFVNDKNHINGIENFWNQAKRHLRKFNGVPKEHFHLYLKECEWRFNHSDP
KSQLLQLKQWVKQGLS

 

Blast result :
Comments
ISPssp3 is 88% aa similar to ISFtu6.
References
1] ISfinder annotation (2017)
2] Chen,J., Yang,J., Jing,X. and Zhu,S. (2015) Direct GenBank submission.