ISEco1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LXSJ01000054 ND Eikenella corrodens
Eikenella corrodens NML140207
DNA section
IS Length : 718 bp

Ends


IR Length : 20/22

IRL : GGGGCTGTCCTAGATAACCAGGAATATTCAAAATTGATTAAAATATTCCT
IRR : GGGGCTGTCCTAAATAACTAGGTTAGACTATCTTTTACCATTTGTTTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TACTGCCTGCTATTAAAAAAATATTTTTTCCATTATCTAT0

DNA sequence

GGGGCTGTCCTAGATAACCAGGAATATTCAAAATTGATTAAAATATTCCTATGAGAAAAAGTCGCCTCAGCCAGCTCGCTCAAAACAAACTGATCGAATT
GTTCGTTGCAGGAGCAACCGCCCGTACTGCCGCCGAATTGGCCGGGGTCAATAAAAACACCGCTGCCTACTACTTTCACCGTTTACGCTTGCTTATCTTT
CATCGTTGCGAACACTTGGAAATGTTTGATGGCGAAGTAGAAGCAGATGAAAGCTATTTTGGCGGCTGCCGCAAAGGCAAACGCGGTCGCGGTGCAGCCG
GCAAAGTGGTGGTATTCGGACTGTTGAAGCGTAACGGTAAGGTTTACACCGTTACCGTGGCCAATACGCAGTCAGCTACCCTGCTGCCGATTATCCGGGA
GAAGGTAAGGCCGGACAGTGTGGTCTATACTGATTGCCACAGTGCCTACAATGTATTGGATGTTAGCGAGTTTAACCACTTGCGCATCAATCACCGTACC
TGTTTTGCAGACAGGCAAAACCACATTAACGGAATTGAGAACTTCTGGAGTCAGGCCAAACGCCATTTGCGTAAATTCAACGGCATTCCGAAAAAGCATT
TCGAACTGTATTTGAAAGAGTGCGAATGGCGATTTAACAACAATGAAATGAAATCTCAAATTGCCATGTTAAAACAAATGGTAAAAGATAGTCTAACCTA
GTTATTTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa51701+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSRLSQLAQNKLIELFVAGATARTAAELAGVNKNTAAYYFHRLRLLIFHRCEHLEMFDGEVEADESYFGGCRKGKRGRGAAGKVVVFGLLKRNGKVYT
VTVANTQSATLLPIIREKVRPDSVVYTDCHSAYNVLDVSEFNHLRINHRTCFADRQNHINGIENFWSQAKRHLRKFNGIPKKHFELYLKECEWRFNNNEM
KSQIAMLKQMVKDSLT

 

Blast result :
Comments
ISEco1 is 88% aa similar to ISHpa1.
References
1] ISfinder annotation (2017)
2] Bernier,A.-M. and Bernard,K. (2016) Direct GenBank submission.