ISEco1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LXSJ01000054 | ND | Eikenella corrodens | Eikenella corrodens NML140207 |
DNA section
IS Length : 718 bp
Ends
IR Length : 20/22
IRL : GGGGCTGTCCTAGATAACCAGGAATATTCAAAATTGATTAAAATATTCCT
IRR : GGGGCTGTCCTAAATAACTAGGTTAGACTATCTTTTACCATTTGTTTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACTGCCTGCTATTAAAAAA | ATATTTTTTCCATTATCTAT | 0 |
DNA sequence
GGGGCTGTCCTAGATAACCAGGAATATTCAAAATTGATTAAAATATTCCTATGAGAAAAAGTCGCCTCAGCCAGCTCGCTCAAAACAAACTGATCGAATT
GTTCGTTGCAGGAGCAACCGCCCGTACTGCCGCCGAATTGGCCGGGGTCAATAAAAACACCGCTGCCTACTACTTTCACCGTTTACGCTTGCTTATCTTT
CATCGTTGCGAACACTTGGAAATGTTTGATGGCGAAGTAGAAGCAGATGAAAGCTATTTTGGCGGCTGCCGCAAAGGCAAACGCGGTCGCGGTGCAGCCG
GCAAAGTGGTGGTATTCGGACTGTTGAAGCGTAACGGTAAGGTTTACACCGTTACCGTGGCCAATACGCAGTCAGCTACCCTGCTGCCGATTATCCGGGA
GAAGGTAAGGCCGGACAGTGTGGTCTATACTGATTGCCACAGTGCCTACAATGTATTGGATGTTAGCGAGTTTAACCACTTGCGCATCAATCACCGTACC
TGTTTTGCAGACAGGCAAAACCACATTAACGGAATTGAGAACTTCTGGAGTCAGGCCAAACGCCATTTGCGTAAATTCAACGGCATTCCGAAAAAGCATT
TCGAACTGTATTTGAAAGAGTGCGAATGGCGATTTAACAACAATGAAATGAAATCTCAAATTGCCATGTTAAAACAAATGGTAAAAGATAGTCTAACCTA
GTTATTTAGGACAGCCCC
GTTCGTTGCAGGAGCAACCGCCCGTACTGCCGCCGAATTGGCCGGGGTCAATAAAAACACCGCTGCCTACTACTTTCACCGTTTACGCTTGCTTATCTTT
CATCGTTGCGAACACTTGGAAATGTTTGATGGCGAAGTAGAAGCAGATGAAAGCTATTTTGGCGGCTGCCGCAAAGGCAAACGCGGTCGCGGTGCAGCCG
GCAAAGTGGTGGTATTCGGACTGTTGAAGCGTAACGGTAAGGTTTACACCGTTACCGTGGCCAATACGCAGTCAGCTACCCTGCTGCCGATTATCCGGGA
GAAGGTAAGGCCGGACAGTGTGGTCTATACTGATTGCCACAGTGCCTACAATGTATTGGATGTTAGCGAGTTTAACCACTTGCGCATCAATCACCGTACC
TGTTTTGCAGACAGGCAAAACCACATTAACGGAATTGAGAACTTCTGGAGTCAGGCCAAACGCCATTTGCGTAAATTCAACGGCATTCCGAAAAAGCATT
TCGAACTGTATTTGAAAGAGTGCGAATGGCGATTTAACAACAATGAAATGAAATCTCAAATTGCCATGTTAAAACAAATGGTAAAAGATAGTCTAACCTA
GTTATTTAGGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
651 bp | 216 aa | 51 | 701 | + | No |
Chemistry : DDE
ORF sequence :
MRKSRLSQLAQNKLIELFVAGATARTAAELAGVNKNTAAYYFHRLRLLIFHRCEHLEMFDGEVEADESYFGGCRKGKRGRGAAGKVVVFGLLKRNGKVYT
VTVANTQSATLLPIIREKVRPDSVVYTDCHSAYNVLDVSEFNHLRINHRTCFADRQNHINGIENFWSQAKRHLRKFNGIPKKHFELYLKECEWRFNNNEM
KSQIAMLKQMVKDSLT
VTVANTQSATLLPIIREKVRPDSVVYTDCHSAYNVLDVSEFNHLRINHRTCFADRQNHINGIENFWSQAKRHLRKFNGIPKKHFELYLKECEWRFNNNEM
KSQIAMLKQMVKDSLT
Blast result :
Comments
ISEco1 is 88% aa similar to ISHpa1.
References
1] ISfinder annotation (2017)
2] Bernier,A.-M. and Bernard,K. (2016) Direct GenBank submission.
2] Bernier,A.-M. and Bernard,K. (2016) Direct GenBank submission.