ISVa19

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio anguillarum,
Vibrio anguillarum
Vibrio anguillarum, serovar O2 (VIB12)
Vibrio jasicida (WP_061027150.1)
Vibrio fluvalis (WP_055452112.1)
Vibrionales bacterium SWAT-3 (WP_008219616.1)
DNA section
IS Length : 1366 bp

Ends


IR Length : 21/27

IRL : GAGCTATGCTGATTTCTGGTGTATGGAAGAGAAAGGAAGTTGCGGTGTAA
IRR : GAGCTATTGTCAAATGTGGTGTATGGAGATCATGCAGTAGCCTGTTGATG

Insertion site


Left flankDirect repeatRight flankDR Length
tctcttcacgtctttgggctgtggtggt8
attttagcgcttttagcgctggttcgttg9
agcagcgctggcagcgctgggtagctatc9
ttaagctccataagctccaagtctgtaag9
gtaatgacactaatgacacctgtcgatag9
tacattaagcacattaagctctgcaggct9
actgctagtgctgctagtgtaccgtgacc9
accgctatacccgctataccatcaagcgc9

DNA sequence

GAGCTATGCTGATTTCTGGTGTATGGAAGAGAAAGGAAGTTGCGGTGTAATCTGTTGATGTAGTTCTCGCCAGAACGATTAACAGAAAGGTACACCGCAT
GACTGATAATACTGTTGTTTCACTGAATACACCACAAGACCCGCTTACAGAACTGATACGTCAAGGGGCTAGAGATTTGATTGCACAAGCTGTTGAAGCT
GAGCTTCAACAGTTACTTGCACAACACCAGAATGTAATGGTTGACGGCAAGCAAGCCATCGTTCGCAACGGTTTCTTACCTGAGCGAACCTTGCAAACAG
GTGTCGGTGATGTCGAAGTGCAAATTCCTAAGGTACGAGATCGCTCAGGGAATGGCGTCAAATTTAATAGCAACTTGATACCACCGTATCTCAAGCGAAC
AAAGAGCGTAGCAACACTGCTCCCGTTACTCTATCTCAAGGGGATATCTACGGGCGATATGCTGCCTGCTCTGGAGTCTCTGCTTGGTAAGGATGCGAAA
GGCCTGTCAGCCAACAGCATCTGTCGCCTCAAAGAGCGCTGGTATGCTGAGTACGAACAGTGGCGTAAGCGTGAGCTCGGTAGGCGTCGCTATGTTTACG
TTTGGGCTGACGGTGTTTACTGTCACGTTAGGATGGACGATAAGCTCTGCTTACTCGTCATCATTGGGGTCGATGACACTGGACGCAAAGAAGTCCTTGG
CGTTCTGGATGGTCATAGAGAGTCAGAAGCAAGTTGGACGGAACTCATTGAGCAGTTACGAGCGCAGGGATTACAGTTAGCACCGAAGCTCGCCATCGGA
GATGGCGCGCTTGGCTTCTGGAAAGCGGTTGCTAAGTGCTGGCCTCAAACGACTCAGCAACGGTGCTGGGTACATAAGACGGCTAATGTGCTGAACAAGG
TGCCCAAAAGCGTACAACCACGAATGAAGGAAGCCCTGCAAGATATCTGGATGGCAGAAACTCGAGATGATGCTTATCACGCCGTCTCAACCTTCCAGAA
GCGCTTTGAAGCCAAGTATCCAAAGGCAACCGACTGCTTGGTGAAAGATAAAGCTGAAATGCTGGCGTTCTACGATTACCCAGCAGAGCATTGGGTTCAT
ATCAGAACAACCAACCCAATAGAATCGATGTTCGCCACAGTACGTTTACGCACGAACAAGACAAAGAACTGTGGAAACAGAAAGACTACGTTGATGATGG
CCTACAAGTTAATGCGCAGTGCAGAGACGAAGTGGCGTCGTCTACGAGGTTTTGCACTCCTCGCGGATGTTGTGAAAGATGTTCGCTTCATTAATGGAGT
GAAAGAAATGGAGACTCATCAACAGGCTACTGCATGATCTCCATACACCACATTTGACAATAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1239 bp412 aa991337+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTDNTVVSLNTPQDPLTELIRQGARDLIAQAVEAELQQLLAQHQNVMVDGKQAIVRNGFLPERTLQTGVGDVEVQIPKVRDRSGNGVKFNSNLIPPYLKR
TKSVATLLPLLYLKGISTGDMLPALESLLGKDAKGLSANSICRLKERWYAEYEQWRKRELGRRRYVYVWADGVYCHVRMDDKLCLLVIIGVDDTGRKEVL
GVLDGHRESEASWTELIEQLRAQGLQLAPKLAIGDGALGFWKAVAKCWPQTTQQRCWVHKTANVLNKVPKSVQPRMKEALQDIWMAETRDDAYHAVSTFQ
KRFEAKYPKATDCLVKDKAEMLAFYDYPAEHWVHIRTTNPIESMFATVRLRTNKTKNCGNRKTTLMMAYKLMRSAETKWRRLRGFALLADVVKDVRFING
VKEMETHQQATA

 

Blast result :Comments : Transposase, putative mutator family
Comments
ISVa19 is 80% aa similar to ISAeme25.
References
1] Holm K.O. (2016) Direct submission
2] Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302