ISVa19
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum, | Vibrio anguillarum Vibrio anguillarum, serovar O2 (VIB12) Vibrio jasicida (WP_061027150.1) Vibrio fluvalis (WP_055452112.1) Vibrionales bacterium SWAT-3 (WP_008219616.1) |
DNA section
IS Length : 1366 bp
Ends
IR Length : 21/27
IRL : GAGCTATGCTGATTTCTGGTGTATGGAAGAGAAAGGAAGTTGCGGTGTAA
IRR : GAGCTATTGTCAAATGTGGTGTATGGAGATCATGCAGTAGCCTGTTGATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tctcttcacg | tctttggg | ctgtggtggt | 8 |
attttagcgc | ttttagcgc | tggttcgttg | 9 |
agcagcgctg | gcagcgctg | ggtagctatc | 9 |
ttaagctcca | taagctcca | agtctgtaag | 9 |
gtaatgacac | taatgacac | ctgtcgatag | 9 |
tacattaagc | acattaagc | tctgcaggct | 9 |
actgctagtg | ctgctagtg | taccgtgacc | 9 |
accgctatac | ccgctatac | catcaagcgc | 9 |
DNA sequence
GAGCTATGCTGATTTCTGGTGTATGGAAGAGAAAGGAAGTTGCGGTGTAATCTGTTGATGTAGTTCTCGCCAGAACGATTAACAGAAAGGTACACCGCAT
GACTGATAATACTGTTGTTTCACTGAATACACCACAAGACCCGCTTACAGAACTGATACGTCAAGGGGCTAGAGATTTGATTGCACAAGCTGTTGAAGCT
GAGCTTCAACAGTTACTTGCACAACACCAGAATGTAATGGTTGACGGCAAGCAAGCCATCGTTCGCAACGGTTTCTTACCTGAGCGAACCTTGCAAACAG
GTGTCGGTGATGTCGAAGTGCAAATTCCTAAGGTACGAGATCGCTCAGGGAATGGCGTCAAATTTAATAGCAACTTGATACCACCGTATCTCAAGCGAAC
AAAGAGCGTAGCAACACTGCTCCCGTTACTCTATCTCAAGGGGATATCTACGGGCGATATGCTGCCTGCTCTGGAGTCTCTGCTTGGTAAGGATGCGAAA
GGCCTGTCAGCCAACAGCATCTGTCGCCTCAAAGAGCGCTGGTATGCTGAGTACGAACAGTGGCGTAAGCGTGAGCTCGGTAGGCGTCGCTATGTTTACG
TTTGGGCTGACGGTGTTTACTGTCACGTTAGGATGGACGATAAGCTCTGCTTACTCGTCATCATTGGGGTCGATGACACTGGACGCAAAGAAGTCCTTGG
CGTTCTGGATGGTCATAGAGAGTCAGAAGCAAGTTGGACGGAACTCATTGAGCAGTTACGAGCGCAGGGATTACAGTTAGCACCGAAGCTCGCCATCGGA
GATGGCGCGCTTGGCTTCTGGAAAGCGGTTGCTAAGTGCTGGCCTCAAACGACTCAGCAACGGTGCTGGGTACATAAGACGGCTAATGTGCTGAACAAGG
TGCCCAAAAGCGTACAACCACGAATGAAGGAAGCCCTGCAAGATATCTGGATGGCAGAAACTCGAGATGATGCTTATCACGCCGTCTCAACCTTCCAGAA
GCGCTTTGAAGCCAAGTATCCAAAGGCAACCGACTGCTTGGTGAAAGATAAAGCTGAAATGCTGGCGTTCTACGATTACCCAGCAGAGCATTGGGTTCAT
ATCAGAACAACCAACCCAATAGAATCGATGTTCGCCACAGTACGTTTACGCACGAACAAGACAAAGAACTGTGGAAACAGAAAGACTACGTTGATGATGG
CCTACAAGTTAATGCGCAGTGCAGAGACGAAGTGGCGTCGTCTACGAGGTTTTGCACTCCTCGCGGATGTTGTGAAAGATGTTCGCTTCATTAATGGAGT
GAAAGAAATGGAGACTCATCAACAGGCTACTGCATGATCTCCATACACCACATTTGACAATAGCTC
GACTGATAATACTGTTGTTTCACTGAATACACCACAAGACCCGCTTACAGAACTGATACGTCAAGGGGCTAGAGATTTGATTGCACAAGCTGTTGAAGCT
GAGCTTCAACAGTTACTTGCACAACACCAGAATGTAATGGTTGACGGCAAGCAAGCCATCGTTCGCAACGGTTTCTTACCTGAGCGAACCTTGCAAACAG
GTGTCGGTGATGTCGAAGTGCAAATTCCTAAGGTACGAGATCGCTCAGGGAATGGCGTCAAATTTAATAGCAACTTGATACCACCGTATCTCAAGCGAAC
AAAGAGCGTAGCAACACTGCTCCCGTTACTCTATCTCAAGGGGATATCTACGGGCGATATGCTGCCTGCTCTGGAGTCTCTGCTTGGTAAGGATGCGAAA
GGCCTGTCAGCCAACAGCATCTGTCGCCTCAAAGAGCGCTGGTATGCTGAGTACGAACAGTGGCGTAAGCGTGAGCTCGGTAGGCGTCGCTATGTTTACG
TTTGGGCTGACGGTGTTTACTGTCACGTTAGGATGGACGATAAGCTCTGCTTACTCGTCATCATTGGGGTCGATGACACTGGACGCAAAGAAGTCCTTGG
CGTTCTGGATGGTCATAGAGAGTCAGAAGCAAGTTGGACGGAACTCATTGAGCAGTTACGAGCGCAGGGATTACAGTTAGCACCGAAGCTCGCCATCGGA
GATGGCGCGCTTGGCTTCTGGAAAGCGGTTGCTAAGTGCTGGCCTCAAACGACTCAGCAACGGTGCTGGGTACATAAGACGGCTAATGTGCTGAACAAGG
TGCCCAAAAGCGTACAACCACGAATGAAGGAAGCCCTGCAAGATATCTGGATGGCAGAAACTCGAGATGATGCTTATCACGCCGTCTCAACCTTCCAGAA
GCGCTTTGAAGCCAAGTATCCAAAGGCAACCGACTGCTTGGTGAAAGATAAAGCTGAAATGCTGGCGTTCTACGATTACCCAGCAGAGCATTGGGTTCAT
ATCAGAACAACCAACCCAATAGAATCGATGTTCGCCACAGTACGTTTACGCACGAACAAGACAAAGAACTGTGGAAACAGAAAGACTACGTTGATGATGG
CCTACAAGTTAATGCGCAGTGCAGAGACGAAGTGGCGTCGTCTACGAGGTTTTGCACTCCTCGCGGATGTTGTGAAAGATGTTCGCTTCATTAATGGAGT
GAAAGAAATGGAGACTCATCAACAGGCTACTGCATGATCTCCATACACCACATTTGACAATAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 412 aa | 99 | 1337 | + | No |
Chemistry : DDE
ORF sequence :
MTDNTVVSLNTPQDPLTELIRQGARDLIAQAVEAELQQLLAQHQNVMVDGKQAIVRNGFLPERTLQTGVGDVEVQIPKVRDRSGNGVKFNSNLIPPYLKR
TKSVATLLPLLYLKGISTGDMLPALESLLGKDAKGLSANSICRLKERWYAEYEQWRKRELGRRRYVYVWADGVYCHVRMDDKLCLLVIIGVDDTGRKEVL
GVLDGHRESEASWTELIEQLRAQGLQLAPKLAIGDGALGFWKAVAKCWPQTTQQRCWVHKTANVLNKVPKSVQPRMKEALQDIWMAETRDDAYHAVSTFQ
KRFEAKYPKATDCLVKDKAEMLAFYDYPAEHWVHIRTTNPIESMFATVRLRTNKTKNCGNRKTTLMMAYKLMRSAETKWRRLRGFALLADVVKDVRFING
VKEMETHQQATA
TKSVATLLPLLYLKGISTGDMLPALESLLGKDAKGLSANSICRLKERWYAEYEQWRKRELGRRRYVYVWADGVYCHVRMDDKLCLLVIIGVDDTGRKEVL
GVLDGHRESEASWTELIEQLRAQGLQLAPKLAIGDGALGFWKAVAKCWPQTTQQRCWVHKTANVLNKVPKSVQPRMKEALQDIWMAETRDDAYHAVSTFQ
KRFEAKYPKATDCLVKDKAEMLAFYDYPAEHWVHIRTTNPIESMFATVRLRTNKTKNCGNRKTTLMMAYKLMRSAETKWRRLRGFALLADVVKDVRFING
VKEMETHQQATA
Blast result :Comments : Transposase, putative mutator family
Comments
ISVa19 is 80% aa similar to ISAeme25.
References
1] Holm K.O. (2016) Direct submission
2] Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302
2] Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302