ISPsy42
- Family Tn3
- Group
Isoform Synonym(s) TnPsy42
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012179 | Y | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae Xanthomonas arboricola pv. pruni str. CFBP 5530 plasmid pXap41 (FR875157) |
DNA section
IS Length : 5667 bp
Ends
IR Length : 39
IRL : GGGGTTGTAAGCCGGAACCGCCGAAATTTCCGTCATCCCAGCTCCAGTTC
IRR : GGGGTTGTAAGCCGGAACCGCCGAAATTTCCGCCACCCGTCCCGAGCGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGGTTGTAAGCCGGAACCGCCGAAATTTCCGTCATCCCAGCTCCAGTTCGGCCACGAGCGCGTCTAGGTCGAGCATCTTGCCGTCGCTCTGGAAGGTGT
AATGCCCGTTCAGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTGGGTGATGAGCGCCAGCGCGTTGGCGTTGCCGCTCGCCTCATACTTCGTCAGCAG
CCGCGACAGGATGGCCGAGTTGTAGTAAATGACCGCGTTGGCGATCAGGCGCGCACACTGGTTGCTGATTTCGATCTCGATGTCGGTGCGTCCGGTCAGT
TCCTTCTTGCCACCGACCTGGGCAACGGTTGAGCGTAGCTGGTGGTAAGACTCGATGCGGTTCTGGGAGCGGTGCACGTTGCGCTCCAGTTGAGGGTCGC
GCAGGTAGCGCAGCGTGTAGATGCTGCGGACGAGCTTGTCGAACTCGAATATCGCGCGCCGCGTCGGGTTTTGCGCGGTATAGGTGCACAGCTTGCGGAT
CAGCGTGCCCTGCGTCATCTCCTTCAGCCCGAGCGTGGCGACGATCCGGTCGATGTTTGGCTTTTCGTCGATGATGAGATCGCGGTCGATTTTCCCGATC
GGTCGGATCAGGCAGTTCTCGTATTGTGCAAGATCGTCGGCGCAGTACAGTTCCTTCAACTGGTCGTCGAGGTTGGCGAAGCGTGGCTCGAAGCGCGGAC
CGAACCAGTGCAGGATGGCGAAGTTGGCCTTGTTGACGCTATGCATGTCGCCGGTGATCGCGGTTGGTACGATATCCGACGTGTTGCGATACCAGATGTC
GAATACGTGATGGGCCTCGTAGTCGTGCGCGCCGATCAGGTAGCCGTTGAGCGGCACGTGGTTGCACAGCAGCGTGTAGGCGACCACGCCTTTCCCGCGC
CCGAAGTATTTACGCGAGTAGCGCGCTTTCACTGTCGGCCGCTCGACGCCGAATTTCTGGCCATCGACAGCACCGTACAGCGTATTGAGATCGAACGAGT
AATACGGAAAAATCGGTAATTGCGCGATGGCGTTGCTGATGCAGTCGTTGGCCGCGTGCAGCGTTGCGTGGCGCAGGTACTGTTGGTAGGCGCTCTCCAG
CACGTGGTACGGGATGTCGCTGGTACGCGCCATGACCTGGTTACCGTGGTTCATCGCCTGCGCGATGATGACCGCCATCAGGCTGTCGGCGTCGGCGACC
TTCTTCGCATAGCGCGGCTGCAAGGGCGTCAGCGCCGACAGGAACTGGCACTGGCCGTCGACGAAGCGGAAAACGTCGGCCACGTCGCAGAACGGCAGTT
GTTCGTAGAACGCTTTCTCGCGGGCCTTCTGGTTTTCGCCCTTGGGTTTGCGCCAGATCAGTTTATGCGTGGCTTTGTCGTATTCCAGGTGCGTCAGCTT
GCCTTGTTTAAGCTCGCGGTTGAGGGCCAGCCACTGCAAGTGAAGTTCGGCCGCCAGCGCATCAAGTTGGGCATCGACCGGCTGCCGCAGGAAGGGGATG
TCCATCTTCGCAAGCGCGTCGGCCTTTTCCTCCACCGAAACCAGCTCGTCGGAGAAATGACGGTGTTGCAAACTGTCGTCGAGGTAGAGTTCGCCCGACT
GGAAGCGTTTCCTGACCTGGCGGTACAGCCAGAATTCGTAGCGATCAGCGTGCAGGCCCGTTGACTTGCCGTCGGCATCGAAGGTCAGCAGGTACGGCCG
CAAGCGTTTCGGTAGCGTGGCCGCTGGACATTCAGCGAGCGGCCGTTGCGATAGGCGCTGCTGTTTGGCGAACACGCCCTTGGCCCAGGCCAGCGCCACC
AGCCACGGGCTGTCCGGGTTGGTTGCGGCGAGGTCGAGCGCGACGTACAGCGGTCGAAGATGCCGACGGATACGCTCGGCCAGGCCGTCCACCGCCTGCC
AGTGCAAAGCCAGTTTGCTCACCGGCTTGGCGCTCATGCGCTGTGCCGTGGTTAGCAGCGCATCGCGAGGCATGATCTTGTAGGCGCGCTGGCGCACATC
GCCGAACGGCGTGGGATCGGGCACGCTGTCGTCGATGTAAAGCGACAGCAGGCGGCCGACCTGCGGCGTGTCTTGCTGACGGCGCACCTGCTCGGCAACG
AAGGACTGCTTTGCGCCCGCACTGCTCTGGTCCTCCAACTGCTTCATGTGGTAGGCCATCGCATCGACCAGGTTGTCGGAGAGCTGTCGGTAGCGCACCC
AAGCATAGCACAGCAGATAGAGGTGGCTCTGATCGGCCTTCAGATTGCGAAGGTCGTGGACGGTGTAGAAGTTCGCCAGGCTCGCGTAGTACAGCAGGTT
TTGCTGCGAGACGCCGAGCTTGGGCAGCAGCGCTTTGGCAATGCTATGCAGCGGTTCCAGCGTGGCGCGTTTTTCCCGTTCGCGGGCCATCTGACGCCAG
CCGAAATCCTTGGCGTCCTGCTTGAGCGCCGCCAGTTGCGACAGGGTGTCATCGCGCACCAGGAGCTGGGCCATCGCGGCCCTGGCCGGATCGTCCAATA
CTTCCGCGAGCAGCCCGCCCAGCCGCCGGCGTTCGGCGGACAGGGCTTCGCTGACCAGCTCTTGCAAGGTGGTGTAGCCTGGCCGAATGATCTTGTGCTC
GTTGAGCCAGACGATCAGCTCGGTGGCGATGAACCCCGGAATTACATCGCGGCGCACGATCAGCGCGGCCTGCTGCGCGAGCTGTGGCAGGAAGCTGGCT
ACCCACGGAAGATAGCAAAACAGCTCGGCGATCCGTTCGCGTTGGGTGTAGTGCTCGTGCTTGGTGACCGCCTTGCACTCGAACGGCTCGTCAGTGAAAT
AGCGTCTCAGCACGAAGGCGCAATCGTCCTCGACCTCGTTCCAGTCGAAGCGGAAGAACGCGTGCTTGGCCTTGAAGTAGCCGATCTGCAAGACGCAATA
GACTTGGGCAGGCATGCCGGGCCGGCTGCTGGCGAGCGCCAGTTCAGCATCGGTCAAGGCCAGATATTCCAGCCGCTGGGTGTCGTCGAAATCCGGCAGG
CCGTACAAGGCTTCCTGCTCGGCGTCCGACAGAATGGTCAATCGTTCGCTCTTGGCCGCCATTACAGTGCCGCTGCGCGTGAGGCGGTTGTCATTTTTGG
AGATCTCGTGCGCTGGTGGATTGCAGAGCTGCATACAAGGCTGTTTTACTCACCTTGAGCCGTGTAGCGGCCTCCCGGACATTTAGCCCGTTGGCGATGT
GTTTACGTGCCTGCTGCAACTTGTCGGCGGTGATGACTGGTTTGCGTCCGCCCTTGCGCCCGCGAGCGGCGGCGGCACTCAACCCGGCCTTGGTGCGCTC
GCGAATCAGGTCGCGCTCGAACTGGCCCAGCGCGCCGAACACGTGGAAGATGAGCCGCCCGCCCGGCGTGGTGGTGTCGATGGCTTCCGTCAGCGAACGA
AAGCCGACGCCTCGCGCTTCCAGCGCGCCTATCGTTTCGATCAGGTGCGGCATGGAGCGCCCAAGCCGGTCCAGCCGCCAGACGGCCAGCACGTCGCCGT
TGCGCAGGTAGGCCAGCGCATCAGCCAAACCGGGGCGGTCAGCCTTGGCCCCGGAAGCCGTGTCCTCGAAAACGCGCTCGCAGCCTGCTTTGCGCAGCGC
ATCCGTCTGCAAAGCGGTGTCCTGTTCCGCCGTTGATACCCGCGCATAGCCGATCAGTGCCATTTGCCACCCATCTTGTCCGCTATTCCGTCCGTCTATT
TTATTGTCCGAAAACCCGTTGCACAAGCAGTTTTCAGGACAGCGCCCGGCACGGCCGACTAACGATCGTTTGACGGACAGCACAAGTAAGGCTTTTTTGC
ATTACTATTGCGTCAACCCATGAGATTGCGAGGCACATCACCATGACCACATTGACCGTTACCGCACGTGGACAAGTGACGTTTCGGAAGGACGTACTGC
AACACCTCGGCATTAGGCCAGGCGACAAGATCGAGCTTGACTTGCTGCCAGATGGTCGGGGAGTACTCAAGGCGGCACGGCCCGCAGGGACGATAGCCAG
CTTTGTCGGCCTGCTCGCGGGTAAGACGCAGAAGGTTGCCACCATCGAAGAAATCAACGAGGCGGCTGCACAAGGATGGGCAGGCAAGCAATGAAGGTCG
CAGTCGATACCAACGTCCTTGTGCGTGCTGTTGTGCGTGACGATCCCGCACAAGCGGACGTTGCCGCCGCAGTCTTGACCGATGCTGAGTTGATCGCGGT
CGCGCTGCCGTGCCTATGCGAATTTGTTTGGGTGCTGATGCGCGTCTATGGCTTCCAGCAATCTGACGCGGCCGACGCGATCCGGGCGCTACTGGATGCC
GCCAACGTGGAAGTGAACCGGCCCGCCGTGGAGGCCGGTTTGCTGGTGCTCGACGCAGGCGGTGACTTTGCCGATGGCGTCATTGCCTACGAAGGTAATT
GGCTTGGTGGGGAAACCTTCGTTTCCTTCGATAAGAAGGCGGTGACACTTCTCTCTGTCCAAGGGCAATCAGCGCGTCTTTTGTGACGGACATGAGAATG
AACGAATTTCGCCGACTGGCCACGAAGATCGACCAGCATATGAAACAGCTTGCCACCCAAGGTGTCAGTGAGGCCCATTCCATCATCAATCACATGATGG
GGTACGTGCCTGACAACCGTGCAGCTGGGCCAGGTAGAGGGTCGGCTCACACGATCTTGCAAGGGATAGAAGCGTCCTCGTCGAAGCTATAGACGGCGCA
CAAACGGTGGTAGCCGTCGGCAACTACGGTGCGCTGGCCTTCCTGGCGCACCAGCAGCAGCGGTGACAGAGCGGTGCCGGACTGGATTTTTTTGAGGTCC
CTTTCCACGTGTGCATTGCTCATTCCTAGCGGCGAGAGGCCGCTGGCGCGCAGGATGTCCTTGGCCTTGAAGGCCGACATGGGTGCCGCGTGCAGCTTAC
GCACCAGCTTGGCGCAGTGGGCGTCGTCATACAGCAGATTGAGATAGGACTGCGCAGCCGGATAATCATGTTCCTCCGGTTGAGCCAGCCAGGCGATTGT
GTTCTTGTCGGTCTTGTCACCCATTAAAGTGCTCCCTCGTTGGTAGGTAGTGAACCACTGCTTCTTGATACGCCCAGAGTTCCTTAGACACTCAAGACCC
TCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCACCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACC
TCGGCGCGTGCGGCGTCCTTGGTGGGATAGATCTGTCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCCTTCACAGGCCGCGTTGTCCCCGCAAT
GTCCCACTGCACTCATCGAGCACACTAGAGGGTCGTGACAAAATTCCGGCGTACTGCCCCATCCCGTCCCATATGACGGCTTGGCCGAGTTCTCCGAAGA
GCACAAGCCACGGGTAGCTCAACTGCTGGTTACAGCGGCAACCTGCAAGTCTTCCAGCCACACGACAACGAGCTGGGCAGCCTGCACCGCCAATGGCTAT
CCGATCTGGACAGCTTAAAGACTTTTTACGCGCGACGGGCACTGACCCCAAAGCGTTGGAGTATGTGAACGAAACGTTCGCACGCCTTGCCGGACGTATC
AAGCAACTTGCCGAGTGATCGCTCGGGACGGGTGGCGGAAATTTCGGCGGTTCCGGCTTACAACCCC
AATGCCCGTTCAGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTGGGTGATGAGCGCCAGCGCGTTGGCGTTGCCGCTCGCCTCATACTTCGTCAGCAG
CCGCGACAGGATGGCCGAGTTGTAGTAAATGACCGCGTTGGCGATCAGGCGCGCACACTGGTTGCTGATTTCGATCTCGATGTCGGTGCGTCCGGTCAGT
TCCTTCTTGCCACCGACCTGGGCAACGGTTGAGCGTAGCTGGTGGTAAGACTCGATGCGGTTCTGGGAGCGGTGCACGTTGCGCTCCAGTTGAGGGTCGC
GCAGGTAGCGCAGCGTGTAGATGCTGCGGACGAGCTTGTCGAACTCGAATATCGCGCGCCGCGTCGGGTTTTGCGCGGTATAGGTGCACAGCTTGCGGAT
CAGCGTGCCCTGCGTCATCTCCTTCAGCCCGAGCGTGGCGACGATCCGGTCGATGTTTGGCTTTTCGTCGATGATGAGATCGCGGTCGATTTTCCCGATC
GGTCGGATCAGGCAGTTCTCGTATTGTGCAAGATCGTCGGCGCAGTACAGTTCCTTCAACTGGTCGTCGAGGTTGGCGAAGCGTGGCTCGAAGCGCGGAC
CGAACCAGTGCAGGATGGCGAAGTTGGCCTTGTTGACGCTATGCATGTCGCCGGTGATCGCGGTTGGTACGATATCCGACGTGTTGCGATACCAGATGTC
GAATACGTGATGGGCCTCGTAGTCGTGCGCGCCGATCAGGTAGCCGTTGAGCGGCACGTGGTTGCACAGCAGCGTGTAGGCGACCACGCCTTTCCCGCGC
CCGAAGTATTTACGCGAGTAGCGCGCTTTCACTGTCGGCCGCTCGACGCCGAATTTCTGGCCATCGACAGCACCGTACAGCGTATTGAGATCGAACGAGT
AATACGGAAAAATCGGTAATTGCGCGATGGCGTTGCTGATGCAGTCGTTGGCCGCGTGCAGCGTTGCGTGGCGCAGGTACTGTTGGTAGGCGCTCTCCAG
CACGTGGTACGGGATGTCGCTGGTACGCGCCATGACCTGGTTACCGTGGTTCATCGCCTGCGCGATGATGACCGCCATCAGGCTGTCGGCGTCGGCGACC
TTCTTCGCATAGCGCGGCTGCAAGGGCGTCAGCGCCGACAGGAACTGGCACTGGCCGTCGACGAAGCGGAAAACGTCGGCCACGTCGCAGAACGGCAGTT
GTTCGTAGAACGCTTTCTCGCGGGCCTTCTGGTTTTCGCCCTTGGGTTTGCGCCAGATCAGTTTATGCGTGGCTTTGTCGTATTCCAGGTGCGTCAGCTT
GCCTTGTTTAAGCTCGCGGTTGAGGGCCAGCCACTGCAAGTGAAGTTCGGCCGCCAGCGCATCAAGTTGGGCATCGACCGGCTGCCGCAGGAAGGGGATG
TCCATCTTCGCAAGCGCGTCGGCCTTTTCCTCCACCGAAACCAGCTCGTCGGAGAAATGACGGTGTTGCAAACTGTCGTCGAGGTAGAGTTCGCCCGACT
GGAAGCGTTTCCTGACCTGGCGGTACAGCCAGAATTCGTAGCGATCAGCGTGCAGGCCCGTTGACTTGCCGTCGGCATCGAAGGTCAGCAGGTACGGCCG
CAAGCGTTTCGGTAGCGTGGCCGCTGGACATTCAGCGAGCGGCCGTTGCGATAGGCGCTGCTGTTTGGCGAACACGCCCTTGGCCCAGGCCAGCGCCACC
AGCCACGGGCTGTCCGGGTTGGTTGCGGCGAGGTCGAGCGCGACGTACAGCGGTCGAAGATGCCGACGGATACGCTCGGCCAGGCCGTCCACCGCCTGCC
AGTGCAAAGCCAGTTTGCTCACCGGCTTGGCGCTCATGCGCTGTGCCGTGGTTAGCAGCGCATCGCGAGGCATGATCTTGTAGGCGCGCTGGCGCACATC
GCCGAACGGCGTGGGATCGGGCACGCTGTCGTCGATGTAAAGCGACAGCAGGCGGCCGACCTGCGGCGTGTCTTGCTGACGGCGCACCTGCTCGGCAACG
AAGGACTGCTTTGCGCCCGCACTGCTCTGGTCCTCCAACTGCTTCATGTGGTAGGCCATCGCATCGACCAGGTTGTCGGAGAGCTGTCGGTAGCGCACCC
AAGCATAGCACAGCAGATAGAGGTGGCTCTGATCGGCCTTCAGATTGCGAAGGTCGTGGACGGTGTAGAAGTTCGCCAGGCTCGCGTAGTACAGCAGGTT
TTGCTGCGAGACGCCGAGCTTGGGCAGCAGCGCTTTGGCAATGCTATGCAGCGGTTCCAGCGTGGCGCGTTTTTCCCGTTCGCGGGCCATCTGACGCCAG
CCGAAATCCTTGGCGTCCTGCTTGAGCGCCGCCAGTTGCGACAGGGTGTCATCGCGCACCAGGAGCTGGGCCATCGCGGCCCTGGCCGGATCGTCCAATA
CTTCCGCGAGCAGCCCGCCCAGCCGCCGGCGTTCGGCGGACAGGGCTTCGCTGACCAGCTCTTGCAAGGTGGTGTAGCCTGGCCGAATGATCTTGTGCTC
GTTGAGCCAGACGATCAGCTCGGTGGCGATGAACCCCGGAATTACATCGCGGCGCACGATCAGCGCGGCCTGCTGCGCGAGCTGTGGCAGGAAGCTGGCT
ACCCACGGAAGATAGCAAAACAGCTCGGCGATCCGTTCGCGTTGGGTGTAGTGCTCGTGCTTGGTGACCGCCTTGCACTCGAACGGCTCGTCAGTGAAAT
AGCGTCTCAGCACGAAGGCGCAATCGTCCTCGACCTCGTTCCAGTCGAAGCGGAAGAACGCGTGCTTGGCCTTGAAGTAGCCGATCTGCAAGACGCAATA
GACTTGGGCAGGCATGCCGGGCCGGCTGCTGGCGAGCGCCAGTTCAGCATCGGTCAAGGCCAGATATTCCAGCCGCTGGGTGTCGTCGAAATCCGGCAGG
CCGTACAAGGCTTCCTGCTCGGCGTCCGACAGAATGGTCAATCGTTCGCTCTTGGCCGCCATTACAGTGCCGCTGCGCGTGAGGCGGTTGTCATTTTTGG
AGATCTCGTGCGCTGGTGGATTGCAGAGCTGCATACAAGGCTGTTTTACTCACCTTGAGCCGTGTAGCGGCCTCCCGGACATTTAGCCCGTTGGCGATGT
GTTTACGTGCCTGCTGCAACTTGTCGGCGGTGATGACTGGTTTGCGTCCGCCCTTGCGCCCGCGAGCGGCGGCGGCACTCAACCCGGCCTTGGTGCGCTC
GCGAATCAGGTCGCGCTCGAACTGGCCCAGCGCGCCGAACACGTGGAAGATGAGCCGCCCGCCCGGCGTGGTGGTGTCGATGGCTTCCGTCAGCGAACGA
AAGCCGACGCCTCGCGCTTCCAGCGCGCCTATCGTTTCGATCAGGTGCGGCATGGAGCGCCCAAGCCGGTCCAGCCGCCAGACGGCCAGCACGTCGCCGT
TGCGCAGGTAGGCCAGCGCATCAGCCAAACCGGGGCGGTCAGCCTTGGCCCCGGAAGCCGTGTCCTCGAAAACGCGCTCGCAGCCTGCTTTGCGCAGCGC
ATCCGTCTGCAAAGCGGTGTCCTGTTCCGCCGTTGATACCCGCGCATAGCCGATCAGTGCCATTTGCCACCCATCTTGTCCGCTATTCCGTCCGTCTATT
TTATTGTCCGAAAACCCGTTGCACAAGCAGTTTTCAGGACAGCGCCCGGCACGGCCGACTAACGATCGTTTGACGGACAGCACAAGTAAGGCTTTTTTGC
ATTACTATTGCGTCAACCCATGAGATTGCGAGGCACATCACCATGACCACATTGACCGTTACCGCACGTGGACAAGTGACGTTTCGGAAGGACGTACTGC
AACACCTCGGCATTAGGCCAGGCGACAAGATCGAGCTTGACTTGCTGCCAGATGGTCGGGGAGTACTCAAGGCGGCACGGCCCGCAGGGACGATAGCCAG
CTTTGTCGGCCTGCTCGCGGGTAAGACGCAGAAGGTTGCCACCATCGAAGAAATCAACGAGGCGGCTGCACAAGGATGGGCAGGCAAGCAATGAAGGTCG
CAGTCGATACCAACGTCCTTGTGCGTGCTGTTGTGCGTGACGATCCCGCACAAGCGGACGTTGCCGCCGCAGTCTTGACCGATGCTGAGTTGATCGCGGT
CGCGCTGCCGTGCCTATGCGAATTTGTTTGGGTGCTGATGCGCGTCTATGGCTTCCAGCAATCTGACGCGGCCGACGCGATCCGGGCGCTACTGGATGCC
GCCAACGTGGAAGTGAACCGGCCCGCCGTGGAGGCCGGTTTGCTGGTGCTCGACGCAGGCGGTGACTTTGCCGATGGCGTCATTGCCTACGAAGGTAATT
GGCTTGGTGGGGAAACCTTCGTTTCCTTCGATAAGAAGGCGGTGACACTTCTCTCTGTCCAAGGGCAATCAGCGCGTCTTTTGTGACGGACATGAGAATG
AACGAATTTCGCCGACTGGCCACGAAGATCGACCAGCATATGAAACAGCTTGCCACCCAAGGTGTCAGTGAGGCCCATTCCATCATCAATCACATGATGG
GGTACGTGCCTGACAACCGTGCAGCTGGGCCAGGTAGAGGGTCGGCTCACACGATCTTGCAAGGGATAGAAGCGTCCTCGTCGAAGCTATAGACGGCGCA
CAAACGGTGGTAGCCGTCGGCAACTACGGTGCGCTGGCCTTCCTGGCGCACCAGCAGCAGCGGTGACAGAGCGGTGCCGGACTGGATTTTTTTGAGGTCC
CTTTCCACGTGTGCATTGCTCATTCCTAGCGGCGAGAGGCCGCTGGCGCGCAGGATGTCCTTGGCCTTGAAGGCCGACATGGGTGCCGCGTGCAGCTTAC
GCACCAGCTTGGCGCAGTGGGCGTCGTCATACAGCAGATTGAGATAGGACTGCGCAGCCGGATAATCATGTTCCTCCGGTTGAGCCAGCCAGGCGATTGT
GTTCTTGTCGGTCTTGTCACCCATTAAAGTGCTCCCTCGTTGGTAGGTAGTGAACCACTGCTTCTTGATACGCCCAGAGTTCCTTAGACACTCAAGACCC
TCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCACCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACC
TCGGCGCGTGCGGCGTCCTTGGTGGGATAGATCTGTCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCCTTCACAGGCCGCGTTGTCCCCGCAAT
GTCCCACTGCACTCATCGAGCACACTAGAGGGTCGTGACAAAATTCCGGCGTACTGCCCCATCCCGTCCCATATGACGGCTTGGCCGAGTTCTCCGAAGA
GCACAAGCCACGGGTAGCTCAACTGCTGGTTACAGCGGCAACCTGCAAGTCTTCCAGCCACACGACAACGAGCTGGGCAGCCTGCACCGCCAATGGCTAT
CCGATCTGGACAGCTTAAAGACTTTTTACGCGCGACGGGCACTGACCCCAAAGCGTTGGAGTATGTGAACGAAACGTTCGCACGCCTTGCCGGACGTATC
AAGCAACTTGCCGAGTGATCGCTCGGGACGGGTGGCGGAAATTTCGGCGGTTCCGGCTTACAACCCC
Protein section
ORF number : 6
ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
252 bp | 83 aa | 1825 | 1574 | - | No |
Annotation : Description : Transcriptional Regulator factor
ORF sequence :
MTTLTVTARGQVTFRKDVLQHLGIRPGDKIELDLLPDGRGVLKAARPAGTIASFVGLLAGKTQKVATIEEINEAAAQGWAGKQ
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
225 bp | 74 aa | 352 | 576 | + | No |
Chemistry : DDE
ORF sequence :
MSAVGHCGDNAACEGFFGLLKRERIRRQIYPTKDAARAEVFDYIEMFYNPNRRHGSTGDLSPVEFERRYAQRGS
Blast result :Comments : IS3 family, 3' endORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
378 bp | 125 aa | 644 | 1021 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGDKTDKNTIAWLAQPEEHDYPAAQSYLNLLYDDAHCAKLVRKLHAAPMSAFKAKDILRASGLSPLGMSNAHVERDLKKIQSGTALSPLLLVRQEGQRTV
VADGYHRLCAVYSFDEDASIPCKIV
VADGYHRLCAVYSFDEDASIPCKIV
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
396 bp | 131 aa | 1577 | 1182 | - | No |
Annotation : DNA-binding proteinDescription :
ORF sequence :
MTTLTVTARGQVTFRKDVLQHLGIRPGDKIELDLLPDGRGVLKAARPAGTIASFVGLLAGKTQKVATIEEINEAAAQGWAGKQ
Blast result :Comments : DNA binding, PinSF (PIN domain of ribonuclease, toxins) nearly always expressed with antitoxinORF 5
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
573 bp | 190 aa | 2005 | 2577 | + | No |
AG : Tn3 resolvase
ORF sequence :
MALIGYARVSTAEQDTALQTDALRKAGCERVFEDTASGAKADRPGLADALAYLRNGDVLAVWRLDRLGRSMPHLIETIGALEARGVGFRSLTEAIDTTTP
GGRLIFHVFGALGQFERDLIRERTKAGLSAAAARGRKGGRKPVITADKLQQARKHIANGLNVREAATRLKVSKTALYAALQSTSARDLQK
GGRLIFHVFGALGQFERDLIRERTKAGLSAAAARGRKGGRKPVITADKLQQARKHIANGLNVREAATRLKVSKTALYAALQSTSARDLQK
Blast result :ORF 6
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
3030 bp | 1009 aa | 2606 | 5635 | + | No |
Chemistry : DDE
ORF sequence :
MAAKSERLTILSDAEQEALYGLPDFDDTQRLEYLALTDAELALASSRPGMPAQVYCVLQIGYFKAKHAFFRFDWNEVEDDCAFVLRRYFTDEPFECKAVT
KHEHYTQRERIAELFCYLPWVASFLPQLAQQAALIVRRDVIPGFIATELIVWLNEHKIIRPGYTTLQELVSEALSAERRRLGGLLAEVLDDPARAAMAQL
LVRDDTLSQLAALKQDAKDFGWRQMAREREKRATLEPLHSIAKALLPKLGVSQQNLLYYASLANFYTVHDLRNLKADQSHLYLLCYAWVRYRQLSDNLVD
AMAYHMKQLEDQSSAGAKQSFVAEQVRRQQDTPQVGRLLSLYIDDSVPDPTPFGDVRQRAYKIMPRDALLTTAQRMSAKPVSKLALHWQAVDGLAERIRR
HLRPLYVALDLAATNPDSPWLVALAWAKGVFAKQQRLSQRPLAECPAATLPKRLRPYLLTFDADGKSTGLHADRYEFWLYRQVRKRFQSGELYLDDSLQH
RHFSDELVSVEEKADALAKMDIPFLRQPVDAQLDALAAELHLQWLALNRELKQGKLTHLEYDKATHKLIWRKPKGENQKAREKAFYEQLPFCDVADVFRF
VDGQCQFLSALTPLQPRYAKKVADADSLMAVIIAQAMNHGNQVMARTSDIPYHVLESAYQQYLRHATLHAANDCISNAIAQLPIFPYYSFDLNTLYGAVD
GQKFGVERPTVKARYSRKYFGRGKGVVAYTLLCNHVPLNGYLIGAHDYEAHHVFDIWYRNTSDIVPTAITGDMHSVNKANFAILHWFGPRFEPRFANLDD
QLKELYCADDLAQYENCLIRPIGKIDRDLIIDEKPNIDRIVATLGLKEMTQGTLIRKLCTYTAQNPTRRAIFEFDKLVRSIYTLRYLRDPQLERNVHRSQ
NRIESYHQLRSTVAQVGGKKELTGRTDIEIEISNQCARLIANAVIYYNSAILSRLLTKYEASGNANALALITQMSPAAWRHILLNGHYTFQSDGKMLDLD
ALVAELELG
KHEHYTQRERIAELFCYLPWVASFLPQLAQQAALIVRRDVIPGFIATELIVWLNEHKIIRPGYTTLQELVSEALSAERRRLGGLLAEVLDDPARAAMAQL
LVRDDTLSQLAALKQDAKDFGWRQMAREREKRATLEPLHSIAKALLPKLGVSQQNLLYYASLANFYTVHDLRNLKADQSHLYLLCYAWVRYRQLSDNLVD
AMAYHMKQLEDQSSAGAKQSFVAEQVRRQQDTPQVGRLLSLYIDDSVPDPTPFGDVRQRAYKIMPRDALLTTAQRMSAKPVSKLALHWQAVDGLAERIRR
HLRPLYVALDLAATNPDSPWLVALAWAKGVFAKQQRLSQRPLAECPAATLPKRLRPYLLTFDADGKSTGLHADRYEFWLYRQVRKRFQSGELYLDDSLQH
RHFSDELVSVEEKADALAKMDIPFLRQPVDAQLDALAAELHLQWLALNRELKQGKLTHLEYDKATHKLIWRKPKGENQKAREKAFYEQLPFCDVADVFRF
VDGQCQFLSALTPLQPRYAKKVADADSLMAVIIAQAMNHGNQVMARTSDIPYHVLESAYQQYLRHATLHAANDCISNAIAQLPIFPYYSFDLNTLYGAVD
GQKFGVERPTVKARYSRKYFGRGKGVVAYTLLCNHVPLNGYLIGAHDYEAHHVFDIWYRNTSDIVPTAITGDMHSVNKANFAILHWFGPRFEPRFANLDD
QLKELYCADDLAQYENCLIRPIGKIDRDLIIDEKPNIDRIVATLGLKEMTQGTLIRKLCTYTAQNPTRRAIFEFDKLVRSIYTLRYLRDPQLERNVHRSQ
NRIESYHQLRSTVAQVGGKKELTGRTDIEIEISNQCARLIANAVIYYNSAILSRLLTKYEASGNANALALITQMSPAAWRHILLNGHYTFQSDGKMLDLD
ALVAELELG
Blast result :
Comments
The transposase of ISPsy42 (orf6) is 91% aa similar to the transposase of ISPsy30, and the resolvase is 70% aa similar to the resolvase of ISPa38.
References
1] Butler M.I. (2017) Direct submission to ISfinder
2] Butler MI, Stockwell PA, Black MA, Day RC, Lamont IL, Poulter RTM. (2013) PLoS ONE. 2013; 8(2): e57464. doi: 10.1371/journal.pone.0057464 PMID: 23555547
2] Butler MI, Stockwell PA, Black MA, Day RC, Lamont IL, Poulter RTM. (2013) PLoS ONE. 2013; 8(2): e57464. doi: 10.1371/journal.pone.0057464 PMID: 23555547