ISIse1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP014564 ND Ichthyobacterium seriolicida
Ichthyobacterium seriolicida
DNA section
IS Length : 740 bp

Ends


IR Length : 23/26

IRL : GGTTCAAGACAACTTAAGGTAAATTTACATGCGTGTAACCCCTTATGTTA
IRR : GGTTCAAGACAACTTAAGGGGATTTTTTCTTATCCATTTTAACATACAAA

Insertion site


Left flankDirect repeatRight flankDR Length
ACACCCGATAATAATAATCTTGATGGA7

DNA sequence

GGTTCAAGACAACTTAAGGTAAATTTACATGCGTGTAACCCCTTATGTTATCTATGAAAACCAAGTATATAATTCGTTCAAGAATTTCTGAGGCAAAATT
CAGGTCTATTTTACGGTTATTTTGCCTAGATATTGAAGCGAAAAAAGTTAGTAAATTGACTAATGTAAGTCGTTATACTATCAACAAAATTTTTGACAAA
TTACGTTTGTTAATTGTTCAAAAATGCGAAGAAGAAAGTCCCTTTAATCAAGGGGAAATAGAATTAGATGAGAGTTATTTTGGAGCTAAACGAGTTAGGG
GAAAAAGGGGACGAGGATCAGGAGGAAAAGTTCCAGTATTTGGTATGTTAAAGAGAGAGGGTAAAGTTTATACACAAATTGTAAAAAACTGCTCATCATC
AGTAATAATGCCTATTATAGAGAGCAGAGCAAGTAAAGAAAGTACAATTTATACTGATGGATTTAAGTCTTATGACGGCTTGGTAAACTATGGTTATAAG
AGGCATTATAGAGTAAAACATAGTGAAAATGAATTTGCTAAAGGAGTAAATCACATTAATGGAATTGAGAATTTTTGGGGACTATGTAAAGTTCGATTAT
CCAGGTTTAGAGGAGTCCATAAGCACAAGTTTTATTATCATCTAAAAGAGTGTGAATTGAGGTTTAATTATCGAAATGAAAATTTGTATTTTTGTATGTT
AAAATGGATAAGAAAAAATCCCCTTAAGTTGTCTTGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
693 bp230 aa45737+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSMKTKYIIRSRISEAKFRSILRLFCLDIEAKKVSKLTNVSRYTINKIFDKLRLLIVQKCEEESPFNQGEIELDESYFGAKRVRGKRGRGSGGKVPVFG
MLKREGKVYTQIVKNCSSSVIMPIIESRASKESTIYTDGFKSYDGLVNYGYKRHYRVKHSENEFAKGVNHINGIENFWGLCKVRLSRFRGVHKHKFYYHL
KECELRFNYRNENLYFCMLKWIRKNPLKLS

 

Blast result :
Comments
ISIse1 is 76% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Takano,T., Nakamura,Y., Takuma,S., Yasuike,M., Matsuyama,T., Sakai,T., Fujiwara,A., Kimoto,K., Fukuda,Y., Kondo,H., Hirono,I. and Nakayasu,C. (2014) Direct GenBank submission.