ISAcsp7

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AXCD01000026 ND Acinetobacter sp.
Acinetobacter sp. COS3
DNA section
IS Length : 744 bp

Ends


IR Length : 15/17

IRL : GGGTCTTAGGAAGTAAACATATCTCAATTGTATGGTAACTTCCTAATATG
IRR : GGGTCTTAGGAAGCTAAAGAGGATTATTTCGTAATAATTTGAGTAGTTCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAGTTTTCCTTATATTTTCTAAAATATTTATGAATTTA8

DNA sequence

GGGTCTTAGGAAGTAAACATATCTCAATTGTATGGTAACTTCCTAATATGAATATAAAAAATAGGTACTATTGTCGTTCTAAAATCACAGAGGCTAAATT
CAGACAACTTATTCGTTGTTTTGCCTTAGATTTAACGGCTTCTAACACAGCAGAATTGATTGGTATTTCAGTCCGTTCTACTAACTCTATTTTTCTTAAA
ATCCGCCATCGAATCGCTGAGCATTGTGAACTCATTTCACCTTTGCAAGGTGATGTAGATGTAGAAGTTGATGAATCTTATTTTGGTGCTCGTCGTGTAA
GAGGTAAGCGAGGACGAGGAGCCTATGGCAAAACCATCGTATTTGGCTTATTAAAACGCAACGGTAAAGTGTATACAGAAATTGTCCCAGATTGCTCCAG
AGCTACACTACAAGCCATTATTCGTGGGCATGTCAATCTAGGAACAATCATTCATTCTGATGGTTGGCGTGGTTACGATGGCTTAGTCGATATTGGTTAT
GATAAGCACTTTCGAGTCAATCATGGAGTGAATGAATTTGCTAATGGTGATCGACATATTAACGGCATTGAATCCTTCTGGAGCTATGCCAAAAGGCGAT
TAGCAAAATTCAATGGCGTAGCCAAACATACTTTCTATTTGCATTTGAAAGAAACCGAGTATCGTTTCAATCACCGGCATGAGAATGTGTACCTTGAACT
ACTCAAATTATTACGAAATAATCCTCTTTAGCTTCCTAAGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
684 bp227 aa48731+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIKNRYYCRSKITEAKFRQLIRCFALDLTASNTAELIGISVRSTNSIFLKIRHRIAEHCELISPLQGDVDVEVDESYFGARRVRGKRGRGAYGKTIVFG
LLKRNGKVYTEIVPDCSRATLQAIIRGHVNLGTIIHSDGWRGYDGLVDIGYDKHFRVNHGVNEFANGDRHINGIESFWSYAKRRLAKFNGVAKHTFYLHL
KETEYRFNHRHENVYLELLKLLRNNPL

 

Blast result :
Comments
ISAcsp7 is 80% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Overholt,W.A., Green,S.J., Marks,K.P., Venkatraman,R., Prakash,O. and Kostka,J.E. (2013) Genome Announc 1 (6), e01015-13.