ISAju1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| APPS01000049 | ND | Acinetobacter junii | Acinetobacter junii CIP 107470 Acinetobacter junii 65 |
DNA section
IS Length : 738 bp
Ends
IR Length : 17
IRL : GGGGCTTAGGAAGTTAAGCATATCAAAAAGTATGGTAACTTCCTTATATG
IRR : GGGGCTTAGGAAGTTAAAGAGGATTGTTACGGAGTAATTTAAGCAAATCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATCAATATAA | TTTAAAA | AAATAAAATT | 7 |
DNA sequence
GGGGCTTAGGAAGTTAAGCATATCAAAAAGTATGGTAACTTCCTTATATGAAAGCAAAAAATAGATACTATTCCCGTTCAAGAATCACAGAGGCAAAATT
CAGACAGATCATTCGCTTTTTTGCCATGGATTTAACTGCTTCAGATACAGCTAAACTCACCAATATTTCTGTACGTTCCATCAATACAATTTACATCAGG
TTGCGTAAAAAGATTGCGGCTCAATGTGAGGAAATATCTCCTTTCAACGGTATCGTTGAACTTGATGAATCCTACTTTGGTGCTCGTCGTATTCGAGGAA
AACGTGGACGTGATGCATCAGGAAAAACCATTGCATTTGGACTACTCAAAAGAGATGGAAACGTATACACAGAAATTGTGCCTGATTGCTCCAAAGCTAC
GCTACAGGGTATTATTCGGGGGCAGATAGAGCTTGATTCTGTGATCAATACAGATGGATGGAGAGGCTATGATGGTTTAGTTGATATTGGTTTTGACAAA
CATTTAAGAGTGAATCATGGGGACAACGAATTTGCATGCGGGGAGCGTCATATTAACGGCATAGAATCATTCTGGGGATATGCTAAAAAGCGACTCGTCA
AGTTTAATGGAATTGACAAAAAGATGTTTTATTTGCATCTTAAAGAAACGGAGTATCGCTTCAATCATCGGAACGGTAATTTATATCTCGATTTGCTTAA
ATTACTCCGTAACAATCCTCTTTAACTTCCTAAGCCCC
CAGACAGATCATTCGCTTTTTTGCCATGGATTTAACTGCTTCAGATACAGCTAAACTCACCAATATTTCTGTACGTTCCATCAATACAATTTACATCAGG
TTGCGTAAAAAGATTGCGGCTCAATGTGAGGAAATATCTCCTTTCAACGGTATCGTTGAACTTGATGAATCCTACTTTGGTGCTCGTCGTATTCGAGGAA
AACGTGGACGTGATGCATCAGGAAAAACCATTGCATTTGGACTACTCAAAAGAGATGGAAACGTATACACAGAAATTGTGCCTGATTGCTCCAAAGCTAC
GCTACAGGGTATTATTCGGGGGCAGATAGAGCTTGATTCTGTGATCAATACAGATGGATGGAGAGGCTATGATGGTTTAGTTGATATTGGTTTTGACAAA
CATTTAAGAGTGAATCATGGGGACAACGAATTTGCATGCGGGGAGCGTCATATTAACGGCATAGAATCATTCTGGGGATATGCTAAAAAGCGACTCGTCA
AGTTTAATGGAATTGACAAAAAGATGTTTTATTTGCATCTTAAAGAAACGGAGTATCGCTTCAATCATCGGAACGGTAATTTATATCTCGATTTGCTTAA
ATTACTCCGTAACAATCCTCTTTAACTTCCTAAGCCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 678 bp | 225 aa | 48 | 725 | + | No |
Chemistry : DDE
ORF sequence :
MKAKNRYYSRSRITEAKFRQIIRFFAMDLTASDTAKLTNISVRSINTIYIRLRKKIAAQCEEISPFNGIVELDESYFGARRIRGKRGRDASGKTIAFGLL
KRDGNVYTEIVPDCSKATLQGIIRGQIELDSVINTDGWRGYDGLVDIGFDKHLRVNHGDNEFACGERHINGIESFWGYAKKRLVKFNGIDKKMFYLHLKE
TEYRFNHRNGNLYLDLLKLLRNNPL
KRDGNVYTEIVPDCSKATLQGIIRGQIELDSVINTDGWRGYDGLVDIGFDKHLRVNHGDNEFACGERHINGIESFWGYAKKRLVKFNGIDKKMFYLHLKE
TEYRFNHRNGNLYLDLLKLLRNNPL
Blast result :
Comments
ISAju1 is 84% aa similar to ISNme3.
References
1] ISfinder annotation (2017)
2] Cerqueira,G., Feldgarden,M., Courvalin,P., Perichon,B., Grillot-Courvalin,C., Clermont,D., Rocha,E., Yoon,E.-J., Nemec,A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2013) Direct GenBank submission.
2] Cerqueira,G., Feldgarden,M., Courvalin,P., Perichon,B., Grillot-Courvalin,C., Clermont,D., Rocha,E., Yoon,E.-J., Nemec,A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2013) Direct GenBank submission.