ISMemo1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AYLO01000051 ND Methyloglobulus morosus
Methyloglobulus morosus KoM1
DNA section
IS Length : 729 bp

Ends


IR Length : 20

IRL : GGCTCTAGACTATCAGGAGACCCAATGATAGCCTAGAAAGATGTTAAGAA
IRR : GGCTCTAGACTATCAGGAGAGATTAAAATTTCTGACGAGTTGCCATAATT

Insertion site


Left flankDirect repeatRight flankDR Length
CTACAGCTAATTAATAATTATATGTTG7

DNA sequence

GGCTCTAGACTATCAGGAGACCCAATGATAGCCTAGAAAGATGTTAAGAAACAGCAAACTAAGTGATTATTGCATCAAAAAATAATTTCTTGTTTTTGTA
TCGATATCCCGGCCAGCAAAACCGCGTTGTTGCTGAGGTTGAACCGCAATACGATCAACCGTTGGTATGGCCTGTTTAGGCGGGCGATTTATTGCCATCA
AGCCGCCTTAAAGGACAAATTGGTCGGGCGGGTTGAGGTCGACGAAAGTTATTTCGGTGCCAAGCGGCAGCGGGGCCGCCAAGGCAAGCTCAAGCGTGGC
AGGGGCACTTTAAAGCAACCGGTATTTGGCGTATTTGAGCGCGAAGGCCGCGTGTACACGGAGATTGTCCCTGACTGTAAGCGGTTGACCTTACAGGCCG
TTATCCTCGGCAAGGTGTCGATTGAAAGCGTCATCTATAGTGATGGCTGGCGGGGTTACAACGGCTTGGTGGATGTGGGTTACTCCCGGCATTTTCGGGT
CAACCATGGCGTTCACGAATTTGCTCGTGATGGTCATTGCCATATTAACGGCATCGAATCATTCTGGAGCTTTACCAAACGAAGGCTTGCCAAGTTCAAT
GGCGTCTCGGTAAACTTCGGACTCCACCTCAAAGAATCGGAGTGGCGATGGAAAAAACATCCTGACGAATTGGCTACTCAATTATGGCAACTCGTCAGAA
ATTTTAATCTCTCCTGATAGTCTAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
648 bp215 aa70717+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHQKIISCFCIDIPASKTALLLRLNRNTINRWYGLFRRAIYCHQAALKDKLVGRVEVDESYFGAKRQRGRQGKLKRGRGTLKQPVFGVFEREGRVYTEIV
PDCKRLTLQAVILGKVSIESVIYSDGWRGYNGLVDVGYSRHFRVNHGVHEFARDGHCHINGIESFWSFTKRRLAKFNGVSVNFGLHLKESEWRWKKHPDE
LATQLWQLVRNFNLS

 

Blast result :
Comments
ISMemo1 is 86% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Poehlein,A., Deutzmann,J.S., Daniel,R. and Simeonova,D.D. (2013) Genome Announc 1 (6), e01078-13.