ISFiba1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AYJP01000006 | ND | Firmicutes bacterium | Firmicutes bacterium ASF500 |
DNA section
IS Length : 986 bp
Ends
IR Length : 22/24
IRL : GTGGTTATCCCTTTTAATCAGCCAGAGGAAAAGGCCGGATTATGGGATAT
IRR : GTGGTTATCCCTTTAACTCAGCCAAGCAGAAGCACCAATAGCTAAGACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCACAATTCA | AAAATATATT | TGTTTTTCTTCA | 10 |
TGTTAGTACGT | ATAATAATAT | TATAAAGGGGTG | 10 |
DNA sequence
GTGGTTATCCCTTTTAATCAGCCAGAGGAAAAGGCCGGATTATGGGATATGCCGGAGAATATAATCAGGCCATGAACCCAAAAAGGAGGGAAAGGGTCAT
GGCAAAGAGTAAGCGGTATCCTCTGGGAACTTTCATGAAAGAGTTTTCCAACGAGGCAAAATGCCGGGAGTACCTGGCAAATCTGCGGTGGCCGGGCGGG
TTTGTCTGCCCTAAATGCGGCTGTCACCACGCTTGCCTGCTATCCAACGGCCGGTATCAATGTGCTGAGTGCCACCACCAGAACTCAGTGACAGCGGGAA
CGGTGCTCCATAGGACCCATATGCCGCTGACGCAGTGGTTTTTGGCATTCTACTTTGTCAGCCAGGATAAGCGGGGCATCTCAGCCGTTGCGCTGATGTC
GGTGCTGGGAACGACTTATAAAACCGCATGGTATATGCTCATGCGTATCCGTACCGCTATGGGTCAGCGGGACAAAATCCATCAGCTCAATGGGACCATT
GAATTTGACGACACCTACTTTGGCGGGCCAACTGTTGGGAAAAAACGGGGCCGGGGTACGGAAAAGGCGAAGGTTTTTGTGGCTGTGTCTTTGGATGAGA
GTGGAAATCCTCTCTATACCAAGATGCGGGTCACGCAGAATATCAAGCGGACCTCTGTCAAAAAATTTGCCCAAGCTGCGTTTGTCCAGGGCAGTACGAT
CCACAGTGACGGTTACGGGAGTTATATCCCGGCTCTGGAGGGCTATGCCCATGAGCACAAACCCTACGCCCCCCATTCGGGCCTGCTCCATTGGCTGCAC
ATCGTAATCAGTAACGCCAAGGCGTTCATCCTGGGTACTTACCATGGCCTGCCTAAAAAGCACCTCCAAGCCTACCTTGACGAATATTGCTTCCGCTTTA
GCCGCCGTGACTTTGGCCCCCGCCTCCTGGAGCGCCTGGTCTTAGCTATTGGTGCTTCTGCTTGGCTGAGTTAAAGGGATAACCAC
GGCAAAGAGTAAGCGGTATCCTCTGGGAACTTTCATGAAAGAGTTTTCCAACGAGGCAAAATGCCGGGAGTACCTGGCAAATCTGCGGTGGCCGGGCGGG
TTTGTCTGCCCTAAATGCGGCTGTCACCACGCTTGCCTGCTATCCAACGGCCGGTATCAATGTGCTGAGTGCCACCACCAGAACTCAGTGACAGCGGGAA
CGGTGCTCCATAGGACCCATATGCCGCTGACGCAGTGGTTTTTGGCATTCTACTTTGTCAGCCAGGATAAGCGGGGCATCTCAGCCGTTGCGCTGATGTC
GGTGCTGGGAACGACTTATAAAACCGCATGGTATATGCTCATGCGTATCCGTACCGCTATGGGTCAGCGGGACAAAATCCATCAGCTCAATGGGACCATT
GAATTTGACGACACCTACTTTGGCGGGCCAACTGTTGGGAAAAAACGGGGCCGGGGTACGGAAAAGGCGAAGGTTTTTGTGGCTGTGTCTTTGGATGAGA
GTGGAAATCCTCTCTATACCAAGATGCGGGTCACGCAGAATATCAAGCGGACCTCTGTCAAAAAATTTGCCCAAGCTGCGTTTGTCCAGGGCAGTACGAT
CCACAGTGACGGTTACGGGAGTTATATCCCGGCTCTGGAGGGCTATGCCCATGAGCACAAACCCTACGCCCCCCATTCGGGCCTGCTCCATTGGCTGCAC
ATCGTAATCAGTAACGCCAAGGCGTTCATCCTGGGTACTTACCATGGCCTGCCTAAAAAGCACCTCCAAGCCTACCTTGACGAATATTGCTTCCGCTTTA
GCCGCCGTGACTTTGGCCCCCGCCTCCTGGAGCGCCTGGTCTTAGCTATTGGTGCTTCTGCTTGGCTGAGTTAAAGGGATAACCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
876 bp | 291 aa | 99 | 974 | + | No |
Chemistry : DDE
ORF sequence :
MAKSKRYPLGTFMKEFSNEAKCREYLANLRWPGGFVCPKCGCHHACLLSNGRYQCAECHHQNSVTAGTVLHRTHMPLTQWFLAFYFVSQDKRGISAVALM
SVLGTTYKTAWYMLMRIRTAMGQRDKIHQLNGTIEFDDTYFGGPTVGKKRGRGTEKAKVFVAVSLDESGNPLYTKMRVTQNIKRTSVKKFAQAAFVQGST
IHSDGYGSYIPALEGYAHEHKPYAPHSGLLHWLHIVISNAKAFILGTYHGLPKKHLQAYLDEYCFRFSRRDFGPRLLERLVLAIGASAWLS
SVLGTTYKTAWYMLMRIRTAMGQRDKIHQLNGTIEFDDTYFGGPTVGKKRGRGTEKAKVFVAVSLDESGNPLYTKMRVTQNIKRTSVKKFAQAAFVQGST
IHSDGYGSYIPALEGYAHEHKPYAPHSGLLHWLHIVISNAKAFILGTYHGLPKKHLQAYLDEYCFRFSRRDFGPRLLERLVLAIGASAWLS
Blast result :
Comments
ISFiba1 is 63% aa similar to ISPaen6.
References
1] ISfinder annotation (2017)
2] Wannemuehler,M.J., Overstreet,A.M., Ward,D.V. and Phillips,G.J. (2014) Genome Announc 2 (2), e00287-14.
2] Wannemuehler,M.J., Overstreet,A.M., Ward,D.V. and Phillips,G.J. (2014) Genome Announc 2 (2), e00287-14.