ISFiba1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AYJP01000006 ND Firmicutes bacterium
Firmicutes bacterium ASF500
DNA section
IS Length : 986 bp

Ends


IR Length : 22/24

IRL : GTGGTTATCCCTTTTAATCAGCCAGAGGAAAAGGCCGGATTATGGGATAT
IRR : GTGGTTATCCCTTTAACTCAGCCAAGCAGAAGCACCAATAGCTAAGACCA

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCACAATTCAAAAATATATTTGTTTTTCTTCA10
TGTTAGTACGTATAATAATATTATAAAGGGGTG10

DNA sequence

GTGGTTATCCCTTTTAATCAGCCAGAGGAAAAGGCCGGATTATGGGATATGCCGGAGAATATAATCAGGCCATGAACCCAAAAAGGAGGGAAAGGGTCAT
GGCAAAGAGTAAGCGGTATCCTCTGGGAACTTTCATGAAAGAGTTTTCCAACGAGGCAAAATGCCGGGAGTACCTGGCAAATCTGCGGTGGCCGGGCGGG
TTTGTCTGCCCTAAATGCGGCTGTCACCACGCTTGCCTGCTATCCAACGGCCGGTATCAATGTGCTGAGTGCCACCACCAGAACTCAGTGACAGCGGGAA
CGGTGCTCCATAGGACCCATATGCCGCTGACGCAGTGGTTTTTGGCATTCTACTTTGTCAGCCAGGATAAGCGGGGCATCTCAGCCGTTGCGCTGATGTC
GGTGCTGGGAACGACTTATAAAACCGCATGGTATATGCTCATGCGTATCCGTACCGCTATGGGTCAGCGGGACAAAATCCATCAGCTCAATGGGACCATT
GAATTTGACGACACCTACTTTGGCGGGCCAACTGTTGGGAAAAAACGGGGCCGGGGTACGGAAAAGGCGAAGGTTTTTGTGGCTGTGTCTTTGGATGAGA
GTGGAAATCCTCTCTATACCAAGATGCGGGTCACGCAGAATATCAAGCGGACCTCTGTCAAAAAATTTGCCCAAGCTGCGTTTGTCCAGGGCAGTACGAT
CCACAGTGACGGTTACGGGAGTTATATCCCGGCTCTGGAGGGCTATGCCCATGAGCACAAACCCTACGCCCCCCATTCGGGCCTGCTCCATTGGCTGCAC
ATCGTAATCAGTAACGCCAAGGCGTTCATCCTGGGTACTTACCATGGCCTGCCTAAAAAGCACCTCCAAGCCTACCTTGACGAATATTGCTTCCGCTTTA
GCCGCCGTGACTTTGGCCCCCGCCTCCTGGAGCGCCTGGTCTTAGCTATTGGTGCTTCTGCTTGGCTGAGTTAAAGGGATAACCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
876 bp291 aa99974+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKSKRYPLGTFMKEFSNEAKCREYLANLRWPGGFVCPKCGCHHACLLSNGRYQCAECHHQNSVTAGTVLHRTHMPLTQWFLAFYFVSQDKRGISAVALM
SVLGTTYKTAWYMLMRIRTAMGQRDKIHQLNGTIEFDDTYFGGPTVGKKRGRGTEKAKVFVAVSLDESGNPLYTKMRVTQNIKRTSVKKFAQAAFVQGST
IHSDGYGSYIPALEGYAHEHKPYAPHSGLLHWLHIVISNAKAFILGTYHGLPKKHLQAYLDEYCFRFSRRDFGPRLLERLVLAIGASAWLS

 

Blast result :
Comments
ISFiba1 is 63% aa similar to ISPaen6.
References
1] ISfinder annotation (2017)
2] Wannemuehler,M.J., Overstreet,A.M., Ward,D.V. and Phillips,G.J. (2014) Genome Announc 2 (2), e00287-14.