ISPsy41
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012179 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae |
DNA section
IS Length : 2576 bp
Ends
IR Length : 13
IRL : TGCGCATTCCACGCCATCCGGCCACCCAGTCCACCAACATCCGGCCACCT
IRR : TGCGGATTCCACGGTCATCCGGCCACCCATTCCATGAACATCCGGCCACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGCGCATTCCACGCCATCCGGCCACCCAGTCCACCAACATCCGGCCACCTATTCCACGCTCATCCGGCCAGGCAGTCGGAGCGCAGCGACGCAGGTTCGC
ATTGTTAGTCTGAAGTCCCTGTCGTCGTCAATTTCGTTGCGCGCCTGCGCATCGATTCGCCCTTCAACTCGATTCGATAAGCGTTATGCACCAGCCGGTC
GAGGATCGCATCGCCCAAGGTCGGGTCGCCGATCAGCGCATGCCATTTGTCCACCGGCATCTGGCTGGTGACCAGCGTCGAGCGGTTGCCGTAGCGGTCA
TCCAGCAGCTCAAGCATGTCGCGCCGTTGGGCGGCGGTAAACGGTGCCAGGCCCCAGTCGTCCAGGATCAGCAGGTCAGTCTTGGCGTAGCCGGCCATCA
GTTTGGCGAAGCGGCCGTCGCCGTGGGCCAGGCCCAGTTCCTCCATCAAGCGCGGTAGACGCAGGTAACGCACGCTGTAGCCATCTCGGCAGGCCTTGTG
GGCCAGCGCGCAGGCGAGCCAGGTTTTGCCCACGCCGGTGGGGCCGCCGATGATCAGGTTCAGGCCATCGCGCAGCCATTGGCCGCTGCCCAGTTGCAGG
ATCAAGGCCTTGTCCAGGCCGCGCGGGCTGCGGTAGTCGATGTCTTCCAGGCAGGCGTTGTGGCGCAGTCGCGCGGCTTTCAGGCGAGTCGTCAGACGTG
CGTCTTCGCGCTCGGTCAGCTCGCGGTCGACCATCAGACCGAGGCGTTCGTCGAAGCTGAGATCGTTGATGTCAGGCGTTGCGTGTTGTTCGCCAAGCGC
CTTGATCATGCCGTGCAGGCGCAGGGTTTGCAGCTTGTCGAGCGTTGGATTCGGTAGCATTTCGAAGCTCCTTTTTCAGGTCAGTGGTAGTAGCCAGGGC
CGCGCAGGTTGATGTGCTCGTCGGGCAGCAGCGGCAGGTTTTGCTGGGACAGCGGTAGCTTTTCCAGCCCTTGGCGCAGGATCGATTCGAGGCTTTTGTA
GCTGCATGCGCCCAGTGCGAGCGCACGCTGGCACGCGGCCTCCAGCCGCGCTTCGCCGTGCTGTTTGCTCAGGCGCAGGATGCCCAGGCAGGCGCGGAAG
CCGTGTTGCGGATGGATTCGGCGTTCGAGGATGTAGGTGATGACGCCAGCGGTGTTGGGCCCGGTCTGCTCTGCCCAGCGGATCAGCCGTTGCGGTGTCC
ATTCGGCGTGCTCGCGGTGGCTCTTGGGCATGTGCTCGGTTTGGGTGGTGTGCCGGCCTTTGTGCTGCGAGCGAAGGTGGCTGGCCACGCGCTGGTTGGC
GTGGAAGCACTCGACGGTCTGGGCGGTGAGTCGTACTTCGAGTTGGTGCTTCACCAACTGGTATGGCACCGAGTAAAAGTGGCCGTCGACCTCGACGTGG
TAGTCGATATGGACGCGTACTTTTTTCCATTCGGCGTAGACGTACGGATGCTCCGGTAGCGCTTGCAGCGCCGGTTGGTCGATGGCCTCGAAGGCTGACC
GGCGCGAGCCGGGCAGCTTTTTGAAGGGCTTGTGGTTGAGGCGATCCAGCAGTAGCGCGATGGCTGTGTTGAGTTCGCCAAGCGAGAAAAACTGGCGGTT
GCGCAGCACCGCCAGGATCCAGCGCTCGACCACTTGAACACCGACTTCGACCTTGGCTTTGTCCTTGGGTTTTCGTGAGCGAGCAGGCAAGACGGCGATG
CCGTAATGCTCGGCCAGGTCGCGGTAACTGGGGTTGATGTCGGGCTCGTAACGATGAGCTTTAGTCACGCCACTGCGCAGATTGTCTGGTACCAGGATCT
GCGTTGTGCCGCCGAAAAAAACAAAGCATCGGACGTGCGAGCCCAGCCAGTCGGGCAGTTTCTGCGACCAGGTGGCCTCGGCAAAGGTGTAGCTGGAGGC
GCCGAGGACAGCGCCGAAGATCTGCGCCTGACGGATCTCGCCGGTTTGCCGGTCGATGATCGGCGCTGTTTGCCCGGCGTAATCGACGAACAGCTTTTCG
CCAGCACGATGCTCCTGGCGCATGACCACGTCGACCTTGGCGGCCCAAAGGCGGTAATGCTCGCAGAACCAGCTGTATTGGAAGCCTTGCGGGTGAGCGA
GTCGATATTCCTGCCAGAGCAAGGCCAAAGTGACGCCGGGACGGCGCAACTCGGCATGGACATGAGCCCAGTCAGGCATCGGACGTTGATCACTGGGCAC
ATCGGGCGGCGGCGGAAAAAGATGCCGTTGCAGCTCGGAGTCGGTCAGCACAGACGGCCAGGTCAGGCCGCTGGCAGCAAAGCGATTGAGGTATTCACCG
ACGCTGGCTCGACCTACTTGCAAGCTGGCAGCAACCTGGCGGGCAGACAGGCCGACCTCGAATTTGAGACGTAGCACTTCTCGAATCTTACGCATGGATA
ACCGCTCCACGACGACCTCTCTGCTTCGATAAAAGAGGTCGATGGTAGTGAATTAAACCTGCGTTGCCGCCTGCCTTATGGGTGGCCGGATAGCCGTGGA
ATGGGTGGCCGGATCATCGTGGAATCAGTGGCCGGATGTTCATGGAATGGGTGGCCGGATGACCGTGGAATCCGCA
ATTGTTAGTCTGAAGTCCCTGTCGTCGTCAATTTCGTTGCGCGCCTGCGCATCGATTCGCCCTTCAACTCGATTCGATAAGCGTTATGCACCAGCCGGTC
GAGGATCGCATCGCCCAAGGTCGGGTCGCCGATCAGCGCATGCCATTTGTCCACCGGCATCTGGCTGGTGACCAGCGTCGAGCGGTTGCCGTAGCGGTCA
TCCAGCAGCTCAAGCATGTCGCGCCGTTGGGCGGCGGTAAACGGTGCCAGGCCCCAGTCGTCCAGGATCAGCAGGTCAGTCTTGGCGTAGCCGGCCATCA
GTTTGGCGAAGCGGCCGTCGCCGTGGGCCAGGCCCAGTTCCTCCATCAAGCGCGGTAGACGCAGGTAACGCACGCTGTAGCCATCTCGGCAGGCCTTGTG
GGCCAGCGCGCAGGCGAGCCAGGTTTTGCCCACGCCGGTGGGGCCGCCGATGATCAGGTTCAGGCCATCGCGCAGCCATTGGCCGCTGCCCAGTTGCAGG
ATCAAGGCCTTGTCCAGGCCGCGCGGGCTGCGGTAGTCGATGTCTTCCAGGCAGGCGTTGTGGCGCAGTCGCGCGGCTTTCAGGCGAGTCGTCAGACGTG
CGTCTTCGCGCTCGGTCAGCTCGCGGTCGACCATCAGACCGAGGCGTTCGTCGAAGCTGAGATCGTTGATGTCAGGCGTTGCGTGTTGTTCGCCAAGCGC
CTTGATCATGCCGTGCAGGCGCAGGGTTTGCAGCTTGTCGAGCGTTGGATTCGGTAGCATTTCGAAGCTCCTTTTTCAGGTCAGTGGTAGTAGCCAGGGC
CGCGCAGGTTGATGTGCTCGTCGGGCAGCAGCGGCAGGTTTTGCTGGGACAGCGGTAGCTTTTCCAGCCCTTGGCGCAGGATCGATTCGAGGCTTTTGTA
GCTGCATGCGCCCAGTGCGAGCGCACGCTGGCACGCGGCCTCCAGCCGCGCTTCGCCGTGCTGTTTGCTCAGGCGCAGGATGCCCAGGCAGGCGCGGAAG
CCGTGTTGCGGATGGATTCGGCGTTCGAGGATGTAGGTGATGACGCCAGCGGTGTTGGGCCCGGTCTGCTCTGCCCAGCGGATCAGCCGTTGCGGTGTCC
ATTCGGCGTGCTCGCGGTGGCTCTTGGGCATGTGCTCGGTTTGGGTGGTGTGCCGGCCTTTGTGCTGCGAGCGAAGGTGGCTGGCCACGCGCTGGTTGGC
GTGGAAGCACTCGACGGTCTGGGCGGTGAGTCGTACTTCGAGTTGGTGCTTCACCAACTGGTATGGCACCGAGTAAAAGTGGCCGTCGACCTCGACGTGG
TAGTCGATATGGACGCGTACTTTTTTCCATTCGGCGTAGACGTACGGATGCTCCGGTAGCGCTTGCAGCGCCGGTTGGTCGATGGCCTCGAAGGCTGACC
GGCGCGAGCCGGGCAGCTTTTTGAAGGGCTTGTGGTTGAGGCGATCCAGCAGTAGCGCGATGGCTGTGTTGAGTTCGCCAAGCGAGAAAAACTGGCGGTT
GCGCAGCACCGCCAGGATCCAGCGCTCGACCACTTGAACACCGACTTCGACCTTGGCTTTGTCCTTGGGTTTTCGTGAGCGAGCAGGCAAGACGGCGATG
CCGTAATGCTCGGCCAGGTCGCGGTAACTGGGGTTGATGTCGGGCTCGTAACGATGAGCTTTAGTCACGCCACTGCGCAGATTGTCTGGTACCAGGATCT
GCGTTGTGCCGCCGAAAAAAACAAAGCATCGGACGTGCGAGCCCAGCCAGTCGGGCAGTTTCTGCGACCAGGTGGCCTCGGCAAAGGTGTAGCTGGAGGC
GCCGAGGACAGCGCCGAAGATCTGCGCCTGACGGATCTCGCCGGTTTGCCGGTCGATGATCGGCGCTGTTTGCCCGGCGTAATCGACGAACAGCTTTTCG
CCAGCACGATGCTCCTGGCGCATGACCACGTCGACCTTGGCGGCCCAAAGGCGGTAATGCTCGCAGAACCAGCTGTATTGGAAGCCTTGCGGGTGAGCGA
GTCGATATTCCTGCCAGAGCAAGGCCAAAGTGACGCCGGGACGGCGCAACTCGGCATGGACATGAGCCCAGTCAGGCATCGGACGTTGATCACTGGGCAC
ATCGGGCGGCGGCGGAAAAAGATGCCGTTGCAGCTCGGAGTCGGTCAGCACAGACGGCCAGGTCAGGCCGCTGGCAGCAAAGCGATTGAGGTATTCACCG
ACGCTGGCTCGACCTACTTGCAAGCTGGCAGCAACCTGGCGGGCAGACAGGCCGACCTCGAATTTGAGACGTAGCACTTCTCGAATCTTACGCATGGATA
ACCGCTCCACGACGACCTCTCTGCTTCGATAAAAGAGGTCGATGGTAGTGAATTAAACCTGCGTTGCCGCCTGCCTTATGGGTGGCCGGATAGCCGTGGA
ATGGGTGGCCGGATCATCGTGGAATCAGTGGCCGGATGTTCATGGAATGGGTGGCCGGATGACCGTGGAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1515 bp | 504 aa | 182 | 1696 | + | No |
Chemistry : DDE
ORF sequence :
MRKIREVLRLKFEVGLSARQVAASLQVGRASVGEYLNRFAASGLTWPSVLTDSELQRHLFPPPPDVPSDQRPMPDWAHVHAELRRPGVTLALLWQEYRLA
HPQGFQYSWFCEHYRLWAAKVDVVMRQEHRAGEKLFVDYAGQTAPIIDRQTGEIRQAQIFGAVLGASSYTFAEATWSQKLPDWLGSHVRCFVFFGGTTQI
LVPDNLRSGVTKAHRYEPDINPSYRDLAEHYGIAVLPARSRKPKDKAKVEVGVQVVERWILAVLRNRQFFSLGELNTAIALLLDRLNHKPFKKLPGSRRS
AFEAIDQPALQALPEHPYVYAEWKKVRVHIDYHVEVDGHFYSVPYQLVKHQLEVRLTAQTVECFHANQRVASHLRSQHKGRHTTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVITYILERRIHPQHGFRACLGILRLSKQHGEARLEAACQRALALGACSYKSLESILRQGLEKLPLSQQNLPLLPDEHINLRGP
GYYH
HPQGFQYSWFCEHYRLWAAKVDVVMRQEHRAGEKLFVDYAGQTAPIIDRQTGEIRQAQIFGAVLGASSYTFAEATWSQKLPDWLGSHVRCFVFFGGTTQI
LVPDNLRSGVTKAHRYEPDINPSYRDLAEHYGIAVLPARSRKPKDKAKVEVGVQVVERWILAVLRNRQFFSLGELNTAIALLLDRLNHKPFKKLPGSRRS
AFEAIDQPALQALPEHPYVYAEWKKVRVHIDYHVEVDGHFYSVPYQLVKHQLEVRLTAQTVECFHANQRVASHLRSQHKGRHTTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVITYILERRIHPQHGFRACLGILRLSKQHGEARLEAACQRALALGACSYKSLESILRQGLEKLPLSQQNLPLLPDEHINLRGP
GYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
756 bp | 251 aa | 1717 | 2472 | + | No |
AG : IS21 helper
ORF sequence :
MLPNPTLDKLQTLRLHGMIKALGEQHATPDINDLSFDERLGLMVDRELTEREDARLTTRLKAARLRHNACLEDIDYRSPRGLDKALILQLGSGQWLRDGL
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTTTGTSD
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTTTGTSD
Blast result :
Comments
ISPsy40 is 97% (ORFA : the transposase) and 98% (ORFB : the helper of transposition) aa similar to ISPre4.
References
1] Butler M. (2017) Direct submission to ISfinder
2] Butler M.I., Stockwell P.A., Black M.A., Day R.C., Lamont I.L. and Poulter R.T. (2013) PLoS ONE 8 (2), E57464
2] Butler M.I., Stockwell P.A., Black M.A., Day R.C., Lamont I.L. and Poulter R.T. (2013) PLoS ONE 8 (2), E57464