ISAth1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LWSB01000011 ND Acidithiobacillus thiooxidans
Acidithiobacillus thiooxidans DMC
DNA section
IS Length : 977 bp

Ends


IR Length : 20/23

IRL : CATGCCTCTGAACCTTTCTCATCATTAATTGCCTAATTCCATATAAGTCA
IRR : CATGCCTCTTAACCTTTTACAGCTACCAATCGGACAGGGATATGGTCCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCCAGAGGAATATAATACGATAATTTGTTAAGAATTCCGG0

DNA sequence

CATGCCTCTGAACCTTTCTCATCATTAATTGCCTAATTCCATATAAGTCATATGGTTGGAGGTGCATAGATGAAAGCAGAAGCCATGAATTTGCTGCAAT
GGCAGGCGCGGTTTGGTACGGAAGAGGAATGTGCCGAAGCGCTGAAACAACAGCGCTGGCCCAATGGCTTTCAATGCCCGCATTGTGGGCACGATCAAGG
CCACTGGGTAGTGTCTCGCAAGGTCTACCAGTGCAATCATTGCCGACGCCAGACCTCTGTAACGGCTGGCACCCTCTTTCATTCCACCAATCTGCCCTTG
GTGCAGTGGTTTCTGGCCATCTATCTGATGGTCTGCGACAAAGGTGGCTTGTCGGCCCTGCGGCTCTCCAAGCAGGTCGGGGTCTCCTGGATTACTGCGC
ACCGGATGCTGCGCAAGATGCGCCACGCCATGGCGGACCGGGACAGTATCTACCGCCTGGGTGGATTGGTTGAGTTGGATGATGCTTTCGTGGGCGGACG
TCGATCCGGAGGCAAAAGCGGACGCGGTGCAGAAGGGAAAACACCGATTCTGGTAGCTATTGAAAGCCGGGATAAGAAGGCGGGTTTCATGGCTATGGAA
ACCATCCCTTCGGTATCCGCTGGAAATATCCGTCAGTTCGTTCAGCGTCATTTGCTCCCCTGGCAGACTACCCGCACGGATGGCTTGATGGCATTGCGCG
TTCTGGGAGAAACCCAGCACCATGAAGGCCGTGTTACACCGCCAGAACAGGTAGATGAATGGCTGCCCTGGGTACACATCGCTATTGGCAACCTTAAAGC
GTTCTTGCTGGGAACTTACCATGGAGTCACCGGCAAATATCTGCAGGAATACCTGGATGAGTTCATCTATCGCTTCACCCGACGCTTTTGGGAGCCTGAG
TTGCCATTGCGCCTGCTCAATGCCTGTATGGACCATATCCCTGTCCGATTGGTAGCTGTAAAAGGTTAAGAGGCATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
900 bp299 aa70969+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAEAMNLLQWQARFGTEEECAEALKQQRWPNGFQCPHCGHDQGHWVVSRKVYQCNHCRRQTSVTAGTLFHSTNLPLVQWFLAIYLMVCDKGGLSALRLS
KQVGVSWITAHRMLRKMRHAMADRDSIYRLGGLVELDDAFVGGRRSGGKSGRGAEGKTPILVAIESRDKKAGFMAMETIPSVSAGNIRQFVQRHLLPWQT
TRTDGLMALRVLGETQHHEGRVTPPEQVDEWLPWVHIAIGNLKAFLLGTYHGVTGKYLQEYLDEFIYRFTRRFWEPELPLRLLNACMDHIPVRLVAVKG

 

Blast result :
Comments
ISAth1 is 71% aa similar to ISPpr5.
References
1] ISfinder annotation (2017)
2] Zhang,X., Feng,X., Tao,J., Ma,L., Xiao,Y., Liang,Y., Liu,X. and Yin,H. (2016) Int J Mol Sci.