ISThde1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LDUG01000025 ND Thiobacillus denitrificans
Thiobacillus denitrificans RG RG25
DNA section
IS Length : 961 bp

Ends


IR Length : 23/28

IRL : GCCTCTGGACCGTTTTCAGTTTTTCCTGCCTAACTCTTTATGATCAACGA
IRR : GCCTCTATACCATTTTCAGTTTGACCTGAGTGTGCGTCAGGCAGGCGTTG

Insertion site


Left flankDirect repeatRight flankDR Length
GCTTTAGCCTATATAAAATATTGC4

DNA sequence

GCCTCTGGACCGTTTTCAGTTTTTCCTGCCTAACTCTTTATGATCAACGAGAGAAGGAGTTGAATCATGAAAGCGACGGAAACCAACCTGCTGGACTGGC
AGAAACGGTACGGAACGGAAGAAGCCTGCGCGCAGGCACTGGCGCGGCAACGCTGGCCTGAAGGGTTCCGTTGCCCGCGCTGCGGGCATGATCATGGCTA
TGTCATCAGCACGCGCCATTCCTGCGAATGCTCCCAGTGCCATTACCAAGCCTCGCGCACGGCGGGGACGCTGTTTCACTCCACCAACCTGCCCCTGAGC
AAGTGGTTCTGGGCGATCTACCTGGCGGCCTCGGACAAGGGCGGCATTTCTGCCGCGCGTCTTTCCAAACAGATTGGGGTTTCCTGGATCACGGCCAGCC
GGATGCTGCGCAAGATCCGCATTGCCATGGGACACCGGGACAGCATTTATCGGCTGCACGATCTGATCGAGATTGACGATGCCTTGGTGGGCGGTCGTCG
CAGCGGAAAGCGAGGCCGCGGCGCCGAGGGCAAACCCCCGGTACTGGTGGCGATTGAAAATCGGGACAAACGTGCCGGGTTTATCGCCATGCAGCAGGTC
GCTGCCGTCACCCGTGAAACGGTAGCGCAGTTTGTTCAACGTCATCTCCCACCCGGTCAGCTAGTGCGTAGCGATGCGCTGTCTGCCCTGGTGGAAATCG
GCAAGACTCAGCACCATGCCGCACGGGTGACGCCGCCCGACAAGGCGGGCGAATGGCTGCCTTGGGTGCATATTGCCATCGGCAACCTCAAGGCGTTTTT
GCTGGGCACCTATCACGGCGTATCGTCCAAATATCTGCAAGAGTATCTCAATGAGTTCTGCTACCGGTTCAACCGGCGCGAGTGGGAAGCCGAATTGCCA
TTACGCCTGCTCAACGCCTGCCTGACGCACACTCAGGTCAAACTGAAAATGGTATAGAGGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
891 bp296 aa67957+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKATETNLLDWQKRYGTEEACAQALARQRWPEGFRCPRCGHDHGYVISTRHSCECSQCHYQASRTAGTLFHSTNLPLSKWFWAIYLAASDKGGISAARLS
KQIGVSWITASRMLRKIRIAMGHRDSIYRLHDLIEIDDALVGGRRSGKRGRGAEGKPPVLVAIENRDKRAGFIAMQQVAAVTRETVAQFVQRHLPPGQLV
RSDALSALVEIGKTQHHAARVTPPDKAGEWLPWVHIAIGNLKAFLLGTYHGVSSKYLQEYLNEFCYRFNRREWEAELPLRLLNACLTHTQVKLKMV

 

Blast result :
Comments
ISThde1 is 75% aa similar to ISPpr5.
References
1] ISfinder annotation (2017).
2] Harrold,Z.R., Skidmore,M.L., Hamilton,T.L., Desch,L., Amada,K., van Gelder,W., Glover,K., Roden,E.E. and Boyd,E.S. (2015) Dec 28;82(5):1486-95.