ISThde1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LDUG01000025 | ND | Thiobacillus denitrificans | Thiobacillus denitrificans RG RG25 |
DNA section
IS Length : 961 bp
Ends
IR Length : 23/28
IRL : GCCTCTGGACCGTTTTCAGTTTTTCCTGCCTAACTCTTTATGATCAACGA
IRR : GCCTCTATACCATTTTCAGTTTGACCTGAGTGTGCGTCAGGCAGGCGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTTTAGCCT | ATAT | AAAATATTGC | 4 |
DNA sequence
GCCTCTGGACCGTTTTCAGTTTTTCCTGCCTAACTCTTTATGATCAACGAGAGAAGGAGTTGAATCATGAAAGCGACGGAAACCAACCTGCTGGACTGGC
AGAAACGGTACGGAACGGAAGAAGCCTGCGCGCAGGCACTGGCGCGGCAACGCTGGCCTGAAGGGTTCCGTTGCCCGCGCTGCGGGCATGATCATGGCTA
TGTCATCAGCACGCGCCATTCCTGCGAATGCTCCCAGTGCCATTACCAAGCCTCGCGCACGGCGGGGACGCTGTTTCACTCCACCAACCTGCCCCTGAGC
AAGTGGTTCTGGGCGATCTACCTGGCGGCCTCGGACAAGGGCGGCATTTCTGCCGCGCGTCTTTCCAAACAGATTGGGGTTTCCTGGATCACGGCCAGCC
GGATGCTGCGCAAGATCCGCATTGCCATGGGACACCGGGACAGCATTTATCGGCTGCACGATCTGATCGAGATTGACGATGCCTTGGTGGGCGGTCGTCG
CAGCGGAAAGCGAGGCCGCGGCGCCGAGGGCAAACCCCCGGTACTGGTGGCGATTGAAAATCGGGACAAACGTGCCGGGTTTATCGCCATGCAGCAGGTC
GCTGCCGTCACCCGTGAAACGGTAGCGCAGTTTGTTCAACGTCATCTCCCACCCGGTCAGCTAGTGCGTAGCGATGCGCTGTCTGCCCTGGTGGAAATCG
GCAAGACTCAGCACCATGCCGCACGGGTGACGCCGCCCGACAAGGCGGGCGAATGGCTGCCTTGGGTGCATATTGCCATCGGCAACCTCAAGGCGTTTTT
GCTGGGCACCTATCACGGCGTATCGTCCAAATATCTGCAAGAGTATCTCAATGAGTTCTGCTACCGGTTCAACCGGCGCGAGTGGGAAGCCGAATTGCCA
TTACGCCTGCTCAACGCCTGCCTGACGCACACTCAGGTCAAACTGAAAATGGTATAGAGGC
AGAAACGGTACGGAACGGAAGAAGCCTGCGCGCAGGCACTGGCGCGGCAACGCTGGCCTGAAGGGTTCCGTTGCCCGCGCTGCGGGCATGATCATGGCTA
TGTCATCAGCACGCGCCATTCCTGCGAATGCTCCCAGTGCCATTACCAAGCCTCGCGCACGGCGGGGACGCTGTTTCACTCCACCAACCTGCCCCTGAGC
AAGTGGTTCTGGGCGATCTACCTGGCGGCCTCGGACAAGGGCGGCATTTCTGCCGCGCGTCTTTCCAAACAGATTGGGGTTTCCTGGATCACGGCCAGCC
GGATGCTGCGCAAGATCCGCATTGCCATGGGACACCGGGACAGCATTTATCGGCTGCACGATCTGATCGAGATTGACGATGCCTTGGTGGGCGGTCGTCG
CAGCGGAAAGCGAGGCCGCGGCGCCGAGGGCAAACCCCCGGTACTGGTGGCGATTGAAAATCGGGACAAACGTGCCGGGTTTATCGCCATGCAGCAGGTC
GCTGCCGTCACCCGTGAAACGGTAGCGCAGTTTGTTCAACGTCATCTCCCACCCGGTCAGCTAGTGCGTAGCGATGCGCTGTCTGCCCTGGTGGAAATCG
GCAAGACTCAGCACCATGCCGCACGGGTGACGCCGCCCGACAAGGCGGGCGAATGGCTGCCTTGGGTGCATATTGCCATCGGCAACCTCAAGGCGTTTTT
GCTGGGCACCTATCACGGCGTATCGTCCAAATATCTGCAAGAGTATCTCAATGAGTTCTGCTACCGGTTCAACCGGCGCGAGTGGGAAGCCGAATTGCCA
TTACGCCTGCTCAACGCCTGCCTGACGCACACTCAGGTCAAACTGAAAATGGTATAGAGGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
891 bp | 296 aa | 67 | 957 | + | No |
Chemistry : DDE
ORF sequence :
MKATETNLLDWQKRYGTEEACAQALARQRWPEGFRCPRCGHDHGYVISTRHSCECSQCHYQASRTAGTLFHSTNLPLSKWFWAIYLAASDKGGISAARLS
KQIGVSWITASRMLRKIRIAMGHRDSIYRLHDLIEIDDALVGGRRSGKRGRGAEGKPPVLVAIENRDKRAGFIAMQQVAAVTRETVAQFVQRHLPPGQLV
RSDALSALVEIGKTQHHAARVTPPDKAGEWLPWVHIAIGNLKAFLLGTYHGVSSKYLQEYLNEFCYRFNRREWEAELPLRLLNACLTHTQVKLKMV
KQIGVSWITASRMLRKIRIAMGHRDSIYRLHDLIEIDDALVGGRRSGKRGRGAEGKPPVLVAIENRDKRAGFIAMQQVAAVTRETVAQFVQRHLPPGQLV
RSDALSALVEIGKTQHHAARVTPPDKAGEWLPWVHIAIGNLKAFLLGTYHGVSSKYLQEYLNEFCYRFNRREWEAELPLRLLNACLTHTQVKLKMV
Blast result :
Comments
ISThde1 is 75% aa similar to ISPpr5.
References
1] ISfinder annotation (2017).
2] Harrold,Z.R., Skidmore,M.L., Hamilton,T.L., Desch,L., Amada,K., van Gelder,W., Glover,K., Roden,E.E. and Boyd,E.S. (2015) Dec 28;82(5):1486-95.
2] Harrold,Z.R., Skidmore,M.L., Hamilton,T.L., Desch,L., Amada,K., van Gelder,W., Glover,K., Roden,E.E. and Boyd,E.S. (2015) Dec 28;82(5):1486-95.