ISPaen5

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNSW01000001 ND Paenibacillus sp.
Paenibacillus sp. GP183
DNA section
IS Length : 996 bp

Ends


IR Length : 17/22

IRL : GACTATGCACTCTGCTCAGGAACAACTTTCAATACGAACATACGTGTGAT
IRR : GGCTATGCACATACCTCAGGAAACAGCGAAAGGGGCAGAAACAAGGCAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TCGATATACAATAGAGAGAACTGATGTTCTTATTCTTTTGGAGAAGGAGT14

DNA sequence

GACTATGCACTCTGCTCAGGAACAACTTTCAATACGAACATACGTGTGATAAAATGGAAATATCAAACATACGTTCGGAGTGATTGGAAGATGGCAAAAG
CAGTTGAAATGTCATTAATCAAATTTCAAAAAGAATTTCGAACCGAGGAAGACTGTGCGTCCTACCTTTCGGCTCAAAAATGGAAAGATGGTTTCCAATG
CCCACGCTGCAAACATGAGAAATACTACTTCATTCAAAAACGAAGACTGTACGAGTGCCAGCAGTGTGCTCATCAGACCTCCGTGACCGCGGGAACCATC
ATGCATAAATCTAAGTTGCCTCTACTGACCTGGTTTTGGGCGATTTACTTAGTTGTCCATGATAAGCGAGGTCGGTCAGCACTAGCACTTTCTGACGTTC
TCGAAATCAACTACAGAACGGCGCTACGCTTGCTGCGCAAGATTCGAGAGGCGATGAGGGCCCAAGATGCCAACTATCAATTAAGTGGTTTAGTGGAAAT
GGACGACGCTTATTTCGGCGGACGCAAATCAGGAACAGATGGCAGAGGCACTGGAAAAACAAAAGTCGCCATCGCTCTATCCACAGATGAAGAAGGCCGA
CCTAGGCATCTTCGAATGAAGGTCATTGAAAAGGTCAGCATTCAGGAGATCCATCGAGTAGCTGAAGAATGCATAGCTAAAGGCTCCACGATCCATTCCG
ATGGTCATCCTTCCTACAAACAATTGAATACAATGGGCTTCCACCACATCAGCAAAAACTACTACCAAGAAGACAATGAAGAATTTCTCAAATGGCTTCA
CACTGTGATCAGTAACGCAAAAGCTTTCGTCGAAGGAACCTACCATGGGCTTGGTTCCACATACTTGCAGACGTATCTCGATGAATTTTGCTATCGATTT
AATCGTCGTTTCTTTGTAAAAGAATTATTCGGACGACTTCTGAATGCTTGCCTTGTTTCTGCCCCTTTCGCTGTTTCCTGAGGTATGTGCATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
891 bp296 aa91981+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKAVEMSLIKFQKEFRTEEDCASYLSAQKWKDGFQCPRCKHEKYYFIQKRRLYECQQCAHQTSVTAGTIMHKSKLPLLTWFWAIYLVVHDKRGRSALAL
SDVLEINYRTALRLLRKIREAMRAQDANYQLSGLVEMDDAYFGGRKSGTDGRGTGKTKVAIALSTDEEGRPRHLRMKVIEKVSIQEIHRVAEECIAKGST
IHSDGHPSYKQLNTMGFHHISKNYYQEDNEEFLKWLHTVISNAKAFVEGTYHGLGSTYLQTYLDEFCYRFNRRFFVKELFGRLLNACLVSAPFAVS

 

Blast result :
Comments
ISPaen5 is 63% aa similar to ISCku1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.