ISAav3

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF086815 ND Acidovorax avenae
Acidovorax avenae subsp. citrulli
DNA section
IS Length : 1321 bp

Ends


IR Length : 14/15

IRL : CAGGCCGTTGAAAAATCCCCCACCGACGCCCGCGTTGGCCGCTACGATCT
IRR : CAGGCTGTTGAAAAAGTGTTCATCAAAGCTGCCGCATCATCGTGCGCATC

Insertion site


Left flankDirect repeatRight flankDR Length
CTGCATAAGATTAATTATTCGTCA4

DNA sequence

CAGGCCGTTGAAAAATCCCCCACCGACGCCCGCGTTGGCCGCTACGATCTGAAGCCAAGCCAGAACAACTCAGACGAGGACGATGAGAGGCAACCCAGAC
TTCCAGGGGGCGATGTTCAGCTACATCAGCCTTGAAGAGCGCGTGCCGCAGACACACCCGCTGCGCAAGTTGCGCGCGGTGGTGGACGCGTTGCTCGCGA
CGATGAGCCGCGAGTTTGAGGCGGTGTATGCCCGCCGGGGCCGTCCCTCGGTGCCGCCGGAAATGCTGCTCAAGGCCCTGCTGCTGCAGATTCTGTTCTC
CATCCGCAGCGAGCGCCAACTGGTCGAGGCCATCAACTACAACCTGCTGTACCGCTGGTTCGTGGGCCTGAACATCGAGGACAAGGTCTGGGACCACTCC
ACCTTCAGCGCCAACCGCGAACGTCTGTTCAACGAAGACCTGGCGCGCGCCTTCTTCGAGCGCGTCAAGCTCAGCGCCCAGTGGGGCAGGCTCACCAGCG
ACGAGCACTTCAGCGTGGACGGCACGCTGATTGAGGCCTGGGCCTCGCACAAGAGCTTCAAGCGCAAGGACGATGACAGCGGCACGCCGCCCGGACGCAA
CCCCGAGGTGGACTTCAAAGGCCAGGAGCGCTGCAACGACACCCACGCCAGCAGCACGGACGTTGATGCCCGGCTGTTCAAGAAGAGCCAGGGCGACAAA
TCCCGCCTGTGCCACATGGGGCACATCCTTATGGAGAACCGCAATGGCCTGATCGTGGATGTCCAGATCACCCACGCCAGCGGCACCGCCGAGCGCGATG
CGGCGCTGGCCATGCTCAAGCGCCGGGGCAACAGGAACAAACGGGCCACGGTCGGTGCCGACAAGGGCTATGACAGCAAGGCCTTCATCAAAGGCTGTCG
CAAGCTCAAAGTAACGCCGCATGTGGCGGCCAAGGACAAGCACTCGGCGGTGGATGGGCGCATCCAGCGGCACGAGGGTTACAAGACCAGTCTGAAGGTG
CGCAAGCGCATTGAGGAGGCCTTCGGCTGGATCAAGACGGTGGGCGGTCTGGCCAAGACCAAGCTCGTCGGCCACGCCAAGCTCACGGGCCAGGCGCTGC
TGTGCTTTGCCACCTACAACCTGGTGCGCCTGGGCTCCATCGGCGGCTGGTGGGACGCGCATCATGCGTGAAACACGGGGTCAGTGCGCCCAAAATGGGC
GAACAGGCCTGAAACAGGCCCCGAAAAGGGCTGCGCAGGCCGTTAAAGGCGCTCTGCACCGGCTGAAAACCGATGCGCACGATGATGCGGCAGCTTTGAT
GAACACTTTTTCAACAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1089 bp362 aa831171+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGNPDFQGAMFSYISLEERVPQTHPLRKLRAVVDALLATMSREFEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAINYNLLYRWFVGLNIED
KVWDHSTFSANRERLFNEDLARAFFERVKLSAQWGRLTSDEHFSVDGTLIEAWASHKSFKRKDDDSGTPPGRNPEVDFKGQERCNDTHASSTDVDARLFK
KSQGDKSRLCHMGHILMENRNGLIVDVQITHASGTAERDAALAMLKRRGNRNKRATVGADKGYDSKAFIKGCRKLKVTPHVAAKDKHSAVDGRIQRHEGY
KTSLKVRKRIEEAFGWIKTVGGLAKTKLVGHAKLTGQALLCFATYNLVRLGSIGGWWDAHHA

 

Blast result :
Comments
ISAav3 is 51% aa similar to IS1562.
References
1] Eaton, R.W. (2001) Direct submission GenBank.