ISPrmu1
- Family IS1595
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| GL945017 | ND | Prevotella multisaccharivorax | Prevotella multisaccharivorax DSM 17128 |
DNA section
IS Length : 1078 bp
Ends
IR Length : 25/28
IRL : AATGAATATCCGCAATCATCCAAATTAGCAAAGTTTATACAGCCTGGCCA
IRR : TATGAATATCCGCAATCATCCAGATCAGTAGATTCTATGCTTGAAACTCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCTGTTATAA | TATTTAT | TGTACTTATC | 7 |
DNA sequence
AATGAATATCCGCAATCATCCAAATTAGCAAAGTTTATACAGCCTGGCCAATCCTTGGTATAAAAATTGCGGGCTTATGTTTGACTATTGGAAAGGAATG
ATTATGAATTTGACGGATTTCTATGAAGTTTATCCTAACGAGGAAGCTTGCGAGCAAGCTCTTAAGGAATTTCGTGAATGCCATACTCTTTATTGTCCGG
TATGTGGCGGTTTGCACCTCAGTTGGAATCCGAGTCATAAGTCTTGGACATGTATGGATTGCGGTCATGAGGTTACCCTCCGTTCCGGCACAGTGATGCA
AGGCAGTAATCTGCCGATTTTCGATTGGTTCGTGGCAATGTTTCTGATAGTAAGTACGAAGCGGGCCATATCCGCTTTGGAGGTACAGCGCCAGCTTGGA
AGGAAACGCTACCAACCCGTCTGGGAAATGATGCATAAGCTGCGTGACGTGATGGGTAAGCGTGACAGTCTCTACAGGCTGTTTGACCAAGTGGAACTTG
ATGAAGGATTCTTCTCCACGGAGACGCCTGACAGTGAAAAATGGCATTCTCTCAAGCGTGGACATGGAAGCCAACGGAAGACGGCCGTGCTTGTCATGGC
GGAAAGTTCTGTTCCCACAAACACACCAATGAAAAAGTACAGCACCGGGAAACGGGTCGGTCATATCAAGATGGAGGTTATACCGGACTTGAAAGCGGCT
ACGGAGGAAGACAAAATAAAGAATTCCATAGATGCCGGGGCTAATGCTACCACAGATGCCACGAAGTCTTACGCGGCACTTACAGCGAACAAAATTGTCG
CTAAGCATAAAGCATATAAGATGAGGGACAAGACCATGGTCGGCAAGGTGCTTCCATGGGTACACATATCCATAAGCAATGCAAAGAGGAGTATTCTTGA
CACGTATCATGACATCAAGGGGGACTTTCTGCAGCTCTACCTTAACGAGTTCTGCTATAAGTTCAACCGAAGATATTTCGGATTTCATCTGTTCGACAGG
CTTGAGCTTTGCGCATGCACTTATAGGACGAGTTTCAAGCATAGAATCTACTGATCTGGATGATTGCGGATATTCATA
ATTATGAATTTGACGGATTTCTATGAAGTTTATCCTAACGAGGAAGCTTGCGAGCAAGCTCTTAAGGAATTTCGTGAATGCCATACTCTTTATTGTCCGG
TATGTGGCGGTTTGCACCTCAGTTGGAATCCGAGTCATAAGTCTTGGACATGTATGGATTGCGGTCATGAGGTTACCCTCCGTTCCGGCACAGTGATGCA
AGGCAGTAATCTGCCGATTTTCGATTGGTTCGTGGCAATGTTTCTGATAGTAAGTACGAAGCGGGCCATATCCGCTTTGGAGGTACAGCGCCAGCTTGGA
AGGAAACGCTACCAACCCGTCTGGGAAATGATGCATAAGCTGCGTGACGTGATGGGTAAGCGTGACAGTCTCTACAGGCTGTTTGACCAAGTGGAACTTG
ATGAAGGATTCTTCTCCACGGAGACGCCTGACAGTGAAAAATGGCATTCTCTCAAGCGTGGACATGGAAGCCAACGGAAGACGGCCGTGCTTGTCATGGC
GGAAAGTTCTGTTCCCACAAACACACCAATGAAAAAGTACAGCACCGGGAAACGGGTCGGTCATATCAAGATGGAGGTTATACCGGACTTGAAAGCGGCT
ACGGAGGAAGACAAAATAAAGAATTCCATAGATGCCGGGGCTAATGCTACCACAGATGCCACGAAGTCTTACGCGGCACTTACAGCGAACAAAATTGTCG
CTAAGCATAAAGCATATAAGATGAGGGACAAGACCATGGTCGGCAAGGTGCTTCCATGGGTACACATATCCATAAGCAATGCAAAGAGGAGTATTCTTGA
CACGTATCATGACATCAAGGGGGACTTTCTGCAGCTCTACCTTAACGAGTTCTGCTATAAGTTCAACCGAAGATATTTCGGATTTCATCTGTTCGACAGG
CTTGAGCTTTGCGCATGCACTTATAGGACGAGTTTCAAGCATAGAATCTACTGATCTGGATGATTGCGGATATTCATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 951 bp | 316 aa | 104 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MNLTDFYEVYPNEEACEQALKEFRECHTLYCPVCGGLHLSWNPSHKSWTCMDCGHEVTLRSGTVMQGSNLPIFDWFVAMFLIVSTKRAISALEVQRQLGR
KRYQPVWEMMHKLRDVMGKRDSLYRLFDQVELDEGFFSTETPDSEKWHSLKRGHGSQRKTAVLVMAESSVPTNTPMKKYSTGKRVGHIKMEVIPDLKAAT
EEDKIKNSIDAGANATTDATKSYAALTANKIVAKHKAYKMRDKTMVGKVLPWVHISISNAKRSILDTYHDIKGDFLQLYLNEFCYKFNRRYFGFHLFDRL
ELCACTYRTSFKHRIY
KRYQPVWEMMHKLRDVMGKRDSLYRLFDQVELDEGFFSTETPDSEKWHSLKRGHGSQRKTAVLVMAESSVPTNTPMKKYSTGKRVGHIKMEVIPDLKAAT
EEDKIKNSIDAGANATTDATKSYAALTANKIVAKHKAYKMRDKTMVGKVLPWVHISISNAKRSILDTYHDIKGDFLQLYLNEFCYKFNRRYFGFHLFDRL
ELCACTYRTSFKHRIY
Blast result :
Comments
ISPrmu1 is 68% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017).
2] Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Pagani,I., Zhang,X., Misra,M., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Gronow,S., Wellnitz,S., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2011) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Pagani,I., Zhang,X., Misra,M., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Gronow,S., Wellnitz,S., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2011) Direct GenBank submission.