ISUnb4

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LPNI01000100 ND unclassified Bacteria
unclassified Bacteria
Bacterium P201 isolate P201
DNA section
IS Length : 1031 bp

Ends


IR Length : 21/26

IRL : AATGACTAAGCAATATTTCACCTAAACGAGGTCATGCGCAGCAGTTTGGC
IRR : AATGATTACGCAATGTTATACCTAAAGTCATTCTTGTAAGCCAGGGCCGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGTAGGTTAAAGTTACAAAAAAAAAGAAATGCCAGGCGGCCCATT0

DNA sequence

AATGACTAAGCAATATTTCACCTAAACGAGGTCATGCGCAGCAGTTTGGCACATACGGTCGATAACTTTGTCCCTATAAACCAAAGGGATATGAGACTTA
TCGACTTCATGCGGGAGTTTCCCGACGAGCAGAGTTGCGAGCGTAAGCTGAAAGAGTACCGTGAGGCACAGGGTGTCGTCTGCCCTCACTGCGGTTGTCA
GGAGTATTATTGGAAGGGCGACAAGAAGTGCTTCGAGTGCAAGCACTGCCGCTATCGCCAGAGTCTGAAGGCGAACACCGTGATGCACGGGAGCCAGTTG
CCGCTGCGGTACTGGTTCATCACCATGCACCTGCTGACTTCGACGAAGAAGAGCTTCTCCGCCGCCGAACTCCAACGCCAGCTCGGGCACAAGAACTATA
TGCCAATTTGGGCGATGCTTCATAAACTCCGGAATGCCATGGGTAAACGGGATGCCGAGTACAAGGTGTTCGGGATGGTGGAGCTGGACGAGGGCTTCTT
CTCTACCGAAATCCCTGATTCCGAGAAGGATAAGCCTCTCAAACGGGGGCATGGCAGCCAGAAGAAGACCAAGGTCCTGGTCCTGGCGGAGACAGCCGAG
GGAACTCCCACCAAGAAATCGGACAAGCCCACCAAGGTCAAGCACATCAAGATGATCGTCATCGACAACCTCAAGTCCGAGACCATCGACGGCAAGGTCA
AGATGTATGTGAATCCCGATTCAACCATTACTTCGGACGATTCCAAATCATATACAAACTTCAAGTCACTTGTGAAAGAGCACATCCATCAGGTCATCGA
ACCGGACCAGGTCGGGAAGATCCTTCCCTGGGTCCACATCGCCATCAGCAACGCCAAGCGGCTTCTGCTGGATGTCTACCATGACATCACTCCGGACTAT
CTCCAGAACTACTTGAACGAGTTCTGCTACAAGTTCAACCGACGGTACTTCGGCGACAGGCTGTTCGACAGGCTCATGGTTGCGGCCCTGGCTTACAAGA
ATGACTTTAGGTATAACATTGCGTAATCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa341026+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRSSLAHTVDNFVPINQRDMRLIDFMREFPDEQSCERKLKEYREAQGVVCPHCGCQEYYWKGDKKCFECKHCRYRQSLKANTVMHGSQLPLRYWFITMHL
LTSTKKSFSAAELQRQLGHKNYMPIWAMLHKLRNAMGKRDAEYKVFGMVELDEGFFSTEIPDSEKDKPLKRGHGSQKKTKVLVLAETAEGTPTKKSDKPT
KVKHIKMIVIDNLKSETIDGKVKMYVNPDSTITSDDSKSYTNFKSLVKEHIHQVIEPDQVGKILPWVHIAISNAKRLLLDVYHDITPDYLQNYLNEFCYK
FNRRYFGDRLFDRLMVAALAYKNDFRYNIA

 

Blast result :
Comments
ISUnb4 is 80% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017)
2] Wolfe,R., Solden,L. and Wrighton,K. (2015) Direct GenBank submission.