ISPsy39
- Family Tn3
- Group
Isoform Synonym(s) TnPsy39
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas syringae | Pseudomonas syringae Pseudomonas syringae pv. actinidiae, strain ICMP9853. |
DNA section
IS Length : 3939 bp
Ends
IR Length : 38/39
IRL : GGGGTCCGGGGAGCAATGGAACAGCCAACCGACTTAAGGAGCCGCAGGAC
IRR : GGGGTCCGGGGAGCAATGGAACAGCGAACCGACTTAAGGGGGGCGTTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGGTCCGGGGAGCAATGGAACAGCCAACCGACTTAAGGAGCCGCAGGACTCTCCTGAGCTCACGGTAATCTGCTCAATACGCTGTCCGAAAGAGGATCG
CTCAACGGACGCTGAGTAGTTAATCGCTAATTCTCGTAAATAGGCTCCATCAGCCATCTCATTTAGCTAGTACTAAATCTTTTGCAGTGAGGGTAGGTCT
TACGTTACAGTTTTTGCCATGACGCAAACCCTGATTGGCTATGCCCGCTGCTCGACCGACAAACAAGACCTCGCTGCACAGCAGGAGGCCCTGCTGAAAC
TCGGTGTGGCACCAGATCGTATTTACACTGACCCTGGGTTTACTGGGACAAACAGAGCGCGCCCAGGCCTCGATCAGGCCCTTGCGGCTGTGCGCAATGG
CGACACCCTTGTTGTCTCCAAACTTGATCGACTTGCCCGCTCCGTTCCTGATGCTCGCACGATCGGTGACAATCTTGCTGCTCGAGGAGTGAAGTTACAG
CTTGGGTCCAGCATTCATGATCCGACTGATCCCATGGGAAAGCTGTTTTTCAACATTCTCGCTACCTTCGCCGAGTTCGAGGCCGATTTGATCCGAATGC
GTACTCGTGAGGGCATGGCGGTCGCACGAGCTAAGGGAAAATTAAGAGGTAAGAAGCCCAAGCTCTCCGATCGGCAACAAAAGGAGCTACGGCGCATGTA
CGACACGAGTAACTATTCGATCAGTGATCTGGCTGAACTATTCTCAATCTCACGACCGACAGTCTATCGCACCCTCGCCCGGCAGGCGGTTTGATGTCAT
GCCAGTTAGCTTCCTGTCCTCTACCCAAAGGGAACGCTACGGTTGCTATCCAGATAGGCTTTCCAGCGAAGAACTGGCGCGCTACTTCCACTTGGACGAC
GATGACCGCGAGTGGATAAGCACTAAGCGACGTGACAGCAACCGACTCGGTTATGCGCTGCAATTGACGACGGCACGCTTTCTTGGCACCTTTCTGGAAG
ACCCTACTGCTGTTCCCTGCACAGTGCTACATACGCTGTCGTCGCAGCTCGGCATCGCCGACGCCAACTGCGTGCAGACCTACCGCGAGAGCGAACAGCG
TTGGCGACACACGACCGAGATTCGCGCTCGCTACGGTTACCGCGAGTTCGTTGAACGTGGCATGCAGTTCCGCCTTGGCCGCTGGCTGTGTGCGCTGTGC
TGGACGGGCACAGATCGGCCAAGCGCTTTATTTGACTACGCCAACGGCTGGTTGATCGGCCACAAGGTGTTGCTGCCAGGCGTCACGGTACTTGAACGCT
TCATCGCCGAGATACGCTCTCGTATGGAGTCGCGTCTGTGGCGTCTGCTAGTGCGTGGCGTGACGGACGAACAGTGTCAGCGCCTCGATGATCTGCTCAA
GCTTGCCAGTGGCAGCCGCCAATCGAGGTTGGATCGGTTACGTAAGGGGCCGGTGCGCGTCAGCGCCCCGGCACTTGTGATGGCACTACAACGCATTGAG
ACCGTGCGTGGCCTGGGCATCAAGCTTCCCGGCACCCATGTTCCGCCAAGCCGTATCGCAGCGTTGGCCCGCTTCGCTGGCACCGTCAAGGTGTCCGCCA
TAGCTCGGTTGCCGCAGGTGAGGCGTATCGCCACATTAGTGGCATTCGTCCACTGCCTGGAGGCCAGTGCGCAGGACGACGCGCTCGATGTGCTCGACTT
ACTACTGCGCGATCTATTCACCAAAGCTGAGAAGGAAAACCGTAAGGTCAGGCAGCGTACGATCAAAGATCTCGACCGGGCGGCTTCAACGCTGGCCGAA
GCCTGCCGGATACTGCTCGATTGTGGTCTGCCAGACAGCGAACTGCGCGAGCGCGTCTATGCGACGATTGGGCGCGATGCACTGGCTCAGGCGCTTGACG
AGGTTCGCGGCCTAGTGCGCCCACCCAACGATGTGTTCTACACAGAACTGGAGGGCAAGAAGGGCACCGTGACACGCTTCCTGCCGACGTTACTGCGCGT
CATCCGCTTCGACGCTACCCCGGCCGCGCAGCCTCTGATACAGGCATTGGAGTGGCTTCGCGAAAAGCCCGATCCCAATCCGTCGACCGCCATCGTCGGC
AAAGCGTGGTTGCGCCATGTCGTGCAGGACGATGGCCGGATCAATGCTACAGCCTATTCCTTCTGCACCCTCGACAAGCTGCGCAGCGCGATCCGCCGCC
GCGACGTGTTCATCAGTCCGAGTTGGCGCTATGCGGACCCGCGTACTGGTCTGCTGACCGGTGCCGAGTGGGAGACCGCAAGGCCCATCGTTTGCCGTTC
GCTGGGACTGAGCGTCCAGGCCGACGACACTTTGACCGCATTGACCCGCGAGCTGGACGAAACTTATCGGCGCGTTGCAGCACGCCTGCCCAAGAATGAC
GCAGTGCGCTTCGAAACAGTCGACGACAAGATCGAGCTAGTGCTCAGCCCGTTGGAAGCGTTGGAGGAACCGCCTTCACTGATCGCGCTGCGCAACGCAA
TCAAAGCACGCCTACCACGTGTCGATCTGCCGGAAATTCTTTTGGAAGTTGCCGGCCGCACTGGCTGTATGGATGCATTTACGCACTTGACCGAGCGTAC
CGCACGCGCTGGTGATCTGACTACCAGCCTGTGTGCGGTGCTGATGGCCGAAGCCTGCAATACCGGCCCCGAGCCACTGGTACGGCAGGACACGCCGGCG
CTCAAACGAGACCGGCTGATGTGGGTCGACCAGAACTACGTGCGCGACGACACGCTGATTGCCTGCAACGCTTTGTTGGTGGCCGCGCAGAACCGCATTG
CACTGGCGCACACCTGGGGCGGCGGCGATGTGGCCTCTGCCGATGGAATGCGTTTCGTGGTGCCGGTACGCACCATTCATGCCGCGCCGAACCCGAAATA
CTTCAATCTAGGGCGTGGCGTTACCTGGTATAACCTGTTGTCTGACCAGCGCACAGGATTGAACGCGATCACTGTGCCCGGCACCTTACGCGACAGCCTA
GTCTTGCTAGCGGTCGTGTTGGAGCAGCAGACCGAGTTGCAACCGACACAGATCATGACCGACACCGGAGCCTACAGCGATTTGGTATTCGGTCTGTTCC
GCCTCTGCAACTATCGCTTCTGTCCACGTCTGGCCGATGTCGGTGGCACGCGCTTCTGGCGCGTAGATCCCCAAGCTGATTATGGCGACCTCAACGCGCT
GGCACGGCAGCGCGTCAACCTCGACCGCATCACACCGCATTGGGACGACGTACTGCGTTTGATTGGTTCACTTAAACTTGGCCTGGTGCCCGCGATGGGC
ATCATGCGCACCTTGCAGGTCGATGAACGGCCGACCAGCCTGGCTCAGGCCATCGCCGAGATAGGCCGCATTGAGAAAACAATCCACATGCTGAATTTCA
TAGACGACGAGGCCAAACGTCGTGCCACACAGCTGCAACTCAATCTCGGTGAAGGACGCCACAGTCTGGCGCGCGAGGTCTTCCACGGTAAGCGCGGTGA
ACTGTTCCAACGTTACCGCGAAGGGCAGGAAGACCAGCTGAGCGCACTCGGCCTGGTCGTGAACATGATCGTGCTATGGAATACGGTGTACATGGATGCG
GTGCTGATGCAATTGCGCAGCGAGGGCTACCCAATACGTCCGGATGACGAGGCGCGGTTGTCGCCGTTCGGCCATGAGCACATCAACATGCTCGGGCGCT
ACTCGTTCTCAGTGCCGGAAGACGTCGCACGTGGTGAACTGCGGCCACTCAACGGCGGCGGCGAATCATGACGTATTCAAGAGCAGCCGCCACGATCTTC
AGCTACATGAGTTGCTGGCCCACAGATTGGGCACACACCCTACGGACTGGCGAGCACGTGTGGCCCAACACTTAGCGTGTCATTTAGCCGGAAACGCCCC
CCTTAAGTCGGTTCGCTGTTCCATTGCTCCCCGGACCCC
CTCAACGGACGCTGAGTAGTTAATCGCTAATTCTCGTAAATAGGCTCCATCAGCCATCTCATTTAGCTAGTACTAAATCTTTTGCAGTGAGGGTAGGTCT
TACGTTACAGTTTTTGCCATGACGCAAACCCTGATTGGCTATGCCCGCTGCTCGACCGACAAACAAGACCTCGCTGCACAGCAGGAGGCCCTGCTGAAAC
TCGGTGTGGCACCAGATCGTATTTACACTGACCCTGGGTTTACTGGGACAAACAGAGCGCGCCCAGGCCTCGATCAGGCCCTTGCGGCTGTGCGCAATGG
CGACACCCTTGTTGTCTCCAAACTTGATCGACTTGCCCGCTCCGTTCCTGATGCTCGCACGATCGGTGACAATCTTGCTGCTCGAGGAGTGAAGTTACAG
CTTGGGTCCAGCATTCATGATCCGACTGATCCCATGGGAAAGCTGTTTTTCAACATTCTCGCTACCTTCGCCGAGTTCGAGGCCGATTTGATCCGAATGC
GTACTCGTGAGGGCATGGCGGTCGCACGAGCTAAGGGAAAATTAAGAGGTAAGAAGCCCAAGCTCTCCGATCGGCAACAAAAGGAGCTACGGCGCATGTA
CGACACGAGTAACTATTCGATCAGTGATCTGGCTGAACTATTCTCAATCTCACGACCGACAGTCTATCGCACCCTCGCCCGGCAGGCGGTTTGATGTCAT
GCCAGTTAGCTTCCTGTCCTCTACCCAAAGGGAACGCTACGGTTGCTATCCAGATAGGCTTTCCAGCGAAGAACTGGCGCGCTACTTCCACTTGGACGAC
GATGACCGCGAGTGGATAAGCACTAAGCGACGTGACAGCAACCGACTCGGTTATGCGCTGCAATTGACGACGGCACGCTTTCTTGGCACCTTTCTGGAAG
ACCCTACTGCTGTTCCCTGCACAGTGCTACATACGCTGTCGTCGCAGCTCGGCATCGCCGACGCCAACTGCGTGCAGACCTACCGCGAGAGCGAACAGCG
TTGGCGACACACGACCGAGATTCGCGCTCGCTACGGTTACCGCGAGTTCGTTGAACGTGGCATGCAGTTCCGCCTTGGCCGCTGGCTGTGTGCGCTGTGC
TGGACGGGCACAGATCGGCCAAGCGCTTTATTTGACTACGCCAACGGCTGGTTGATCGGCCACAAGGTGTTGCTGCCAGGCGTCACGGTACTTGAACGCT
TCATCGCCGAGATACGCTCTCGTATGGAGTCGCGTCTGTGGCGTCTGCTAGTGCGTGGCGTGACGGACGAACAGTGTCAGCGCCTCGATGATCTGCTCAA
GCTTGCCAGTGGCAGCCGCCAATCGAGGTTGGATCGGTTACGTAAGGGGCCGGTGCGCGTCAGCGCCCCGGCACTTGTGATGGCACTACAACGCATTGAG
ACCGTGCGTGGCCTGGGCATCAAGCTTCCCGGCACCCATGTTCCGCCAAGCCGTATCGCAGCGTTGGCCCGCTTCGCTGGCACCGTCAAGGTGTCCGCCA
TAGCTCGGTTGCCGCAGGTGAGGCGTATCGCCACATTAGTGGCATTCGTCCACTGCCTGGAGGCCAGTGCGCAGGACGACGCGCTCGATGTGCTCGACTT
ACTACTGCGCGATCTATTCACCAAAGCTGAGAAGGAAAACCGTAAGGTCAGGCAGCGTACGATCAAAGATCTCGACCGGGCGGCTTCAACGCTGGCCGAA
GCCTGCCGGATACTGCTCGATTGTGGTCTGCCAGACAGCGAACTGCGCGAGCGCGTCTATGCGACGATTGGGCGCGATGCACTGGCTCAGGCGCTTGACG
AGGTTCGCGGCCTAGTGCGCCCACCCAACGATGTGTTCTACACAGAACTGGAGGGCAAGAAGGGCACCGTGACACGCTTCCTGCCGACGTTACTGCGCGT
CATCCGCTTCGACGCTACCCCGGCCGCGCAGCCTCTGATACAGGCATTGGAGTGGCTTCGCGAAAAGCCCGATCCCAATCCGTCGACCGCCATCGTCGGC
AAAGCGTGGTTGCGCCATGTCGTGCAGGACGATGGCCGGATCAATGCTACAGCCTATTCCTTCTGCACCCTCGACAAGCTGCGCAGCGCGATCCGCCGCC
GCGACGTGTTCATCAGTCCGAGTTGGCGCTATGCGGACCCGCGTACTGGTCTGCTGACCGGTGCCGAGTGGGAGACCGCAAGGCCCATCGTTTGCCGTTC
GCTGGGACTGAGCGTCCAGGCCGACGACACTTTGACCGCATTGACCCGCGAGCTGGACGAAACTTATCGGCGCGTTGCAGCACGCCTGCCCAAGAATGAC
GCAGTGCGCTTCGAAACAGTCGACGACAAGATCGAGCTAGTGCTCAGCCCGTTGGAAGCGTTGGAGGAACCGCCTTCACTGATCGCGCTGCGCAACGCAA
TCAAAGCACGCCTACCACGTGTCGATCTGCCGGAAATTCTTTTGGAAGTTGCCGGCCGCACTGGCTGTATGGATGCATTTACGCACTTGACCGAGCGTAC
CGCACGCGCTGGTGATCTGACTACCAGCCTGTGTGCGGTGCTGATGGCCGAAGCCTGCAATACCGGCCCCGAGCCACTGGTACGGCAGGACACGCCGGCG
CTCAAACGAGACCGGCTGATGTGGGTCGACCAGAACTACGTGCGCGACGACACGCTGATTGCCTGCAACGCTTTGTTGGTGGCCGCGCAGAACCGCATTG
CACTGGCGCACACCTGGGGCGGCGGCGATGTGGCCTCTGCCGATGGAATGCGTTTCGTGGTGCCGGTACGCACCATTCATGCCGCGCCGAACCCGAAATA
CTTCAATCTAGGGCGTGGCGTTACCTGGTATAACCTGTTGTCTGACCAGCGCACAGGATTGAACGCGATCACTGTGCCCGGCACCTTACGCGACAGCCTA
GTCTTGCTAGCGGTCGTGTTGGAGCAGCAGACCGAGTTGCAACCGACACAGATCATGACCGACACCGGAGCCTACAGCGATTTGGTATTCGGTCTGTTCC
GCCTCTGCAACTATCGCTTCTGTCCACGTCTGGCCGATGTCGGTGGCACGCGCTTCTGGCGCGTAGATCCCCAAGCTGATTATGGCGACCTCAACGCGCT
GGCACGGCAGCGCGTCAACCTCGACCGCATCACACCGCATTGGGACGACGTACTGCGTTTGATTGGTTCACTTAAACTTGGCCTGGTGCCCGCGATGGGC
ATCATGCGCACCTTGCAGGTCGATGAACGGCCGACCAGCCTGGCTCAGGCCATCGCCGAGATAGGCCGCATTGAGAAAACAATCCACATGCTGAATTTCA
TAGACGACGAGGCCAAACGTCGTGCCACACAGCTGCAACTCAATCTCGGTGAAGGACGCCACAGTCTGGCGCGCGAGGTCTTCCACGGTAAGCGCGGTGA
ACTGTTCCAACGTTACCGCGAAGGGCAGGAAGACCAGCTGAGCGCACTCGGCCTGGTCGTGAACATGATCGTGCTATGGAATACGGTGTACATGGATGCG
GTGCTGATGCAATTGCGCAGCGAGGGCTACCCAATACGTCCGGATGACGAGGCGCGGTTGTCGCCGTTCGGCCATGAGCACATCAACATGCTCGGGCGCT
ACTCGTTCTCAGTGCCGGAAGACGTCGCACGTGGTGAACTGCGGCCACTCAACGGCGGCGGCGAATCATGACGTATTCAAGAGCAGCCGCCACGATCTTC
AGCTACATGAGTTGCTGGCCCACAGATTGGGCACACACCCTACGGACTGGCGAGCACGTGTGGCCCAACACTTAGCGTGTCATTTAGCCGGAAACGCCCC
CCTTAAGTCGGTTCGCTGTTCCATTGCTCCCCGGACCCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
576 bp | 191 aa | 219 | 794 | + | No |
AG : Tn3 resolvase
ORF sequence :
MTQTLIGYARCSTDKQDLAAQQEALLKLGVAPDRIYTDPGFTGTNRARPGLDQALAAVRNGDTLVVSKLDRLARSVPDARTIGDNLAARGVKLQLGSSIH
DPTDPMGKLFFNILATFAEFEADLIRMRTREGMAVARAKGKLRGKKPKLSDRQQKELRRMYDTSNYSISDLAELFSISRPTVYRTLARQAV
DPTDPMGKLFFNILATFAEFEADLIRMRTREGMAVARAKGKLRGKKPKLSDRQQKELRRMYDTSNYSISDLAELFSISRPTVYRTLARQAV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2973 bp | 990 aa | 799 | 3771 | + | No |
Chemistry : DDE
ORF sequence :
MPVSFLSSTQRERYGCYPDRLSSEELARYFHLDDDDREWISTKRRDSNRLGYALQLTTARFLGTFLEDPTAVPCTVLHTLSSQLGIADANCVQTYRESEQ
RWRHTTEIRARYGYREFVERGMQFRLGRWLCALCWTGTDRPSALFDYANGWLIGHKVLLPGVTVLERFIAEIRSRMESRLWRLLVRGVTDEQCQRLDDLL
KLASGSRQSRLDRLRKGPVRVSAPALVMALQRIETVRGLGIKLPGTHVPPSRIAALARFAGTVKVSAIARLPQVRRIATLVAFVHCLEASAQDDALDVLD
LLLRDLFTKAEKENRKVRQRTIKDLDRAASTLAEACRILLDCGLPDSELRERVYATIGRDALAQALDEVRGLVRPPNDVFYTELEGKKGTVTRFLPTLLR
VIRFDATPAAQPLIQALEWLREKPDPNPSTAIVGKAWLRHVVQDDGRINATAYSFCTLDKLRSAIRRRDVFISPSWRYADPRTGLLTGAEWETARPIVCR
SLGLSVQADDTLTALTRELDETYRRVAARLPKNDAVRFETVDDKIELVLSPLEALEEPPSLIALRNAIKARLPRVDLPEILLEVAGRTGCMDAFTHLTER
TARAGDLTTSLCAVLMAEACNTGPEPLVRQDTPALKRDRLMWVDQNYVRDDTLIACNALLVAAQNRIALAHTWGGGDVASADGMRFVVPVRTIHAAPNPK
YFNLGRGVTWYNLLSDQRTGLNAITVPGTLRDSLVLLAVVLEQQTELQPTQIMTDTGAYSDLVFGLFRLCNYRFCPRLADVGGTRFWRVDPQADYGDLNA
LARQRVNLDRITPHWDDVLRLIGSLKLGLVPAMGIMRTLQVDERPTSLAQAIAEIGRIEKTIHMLNFIDDEAKRRATQLQLNLGEGRHSLAREVFHGKRG
ELFQRYREGQEDQLSALGLVVNMIVLWNTVYMDAVLMQLRSEGYPIRPDDEARLSPFGHEHINMLGRYSFSVPEDVARGELRPLNGGGES
RWRHTTEIRARYGYREFVERGMQFRLGRWLCALCWTGTDRPSALFDYANGWLIGHKVLLPGVTVLERFIAEIRSRMESRLWRLLVRGVTDEQCQRLDDLL
KLASGSRQSRLDRLRKGPVRVSAPALVMALQRIETVRGLGIKLPGTHVPPSRIAALARFAGTVKVSAIARLPQVRRIATLVAFVHCLEASAQDDALDVLD
LLLRDLFTKAEKENRKVRQRTIKDLDRAASTLAEACRILLDCGLPDSELRERVYATIGRDALAQALDEVRGLVRPPNDVFYTELEGKKGTVTRFLPTLLR
VIRFDATPAAQPLIQALEWLREKPDPNPSTAIVGKAWLRHVVQDDGRINATAYSFCTLDKLRSAIRRRDVFISPSWRYADPRTGLLTGAEWETARPIVCR
SLGLSVQADDTLTALTRELDETYRRVAARLPKNDAVRFETVDDKIELVLSPLEALEEPPSLIALRNAIKARLPRVDLPEILLEVAGRTGCMDAFTHLTER
TARAGDLTTSLCAVLMAEACNTGPEPLVRQDTPALKRDRLMWVDQNYVRDDTLIACNALLVAAQNRIALAHTWGGGDVASADGMRFVVPVRTIHAAPNPK
YFNLGRGVTWYNLLSDQRTGLNAITVPGTLRDSLVLLAVVLEQQTELQPTQIMTDTGAYSDLVFGLFRLCNYRFCPRLADVGGTRFWRVDPQADYGDLNA
LARQRVNLDRITPHWDDVLRLIGSLKLGLVPAMGIMRTLQVDERPTSLAQAIAEIGRIEKTIHMLNFIDDEAKRRATQLQLNLGEGRHSLAREVFHGKRG
ELFQRYREGQEDQLSALGLVVNMIVLWNTVYMDAVLMQLRSEGYPIRPDDEARLSPFGHEHINMLGRYSFSVPEDVARGELRPLNGGGES
Blast result :
Comments
The transposase of ISPsy39 is 94% aa similar to the transposase of ISXc4.
References
1] Butler M. (2016) Direct submission to ISfinder