ISPsy39

  • Family Tn3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) TnPsy39
Accession numberTranspositionOriginHost
ND Pseudomonas syringae
Pseudomonas syringae
Pseudomonas syringae pv. actinidiae, strain ICMP9853.
DNA section
IS Length : 3939 bp

Ends


IR Length : 38/39

IRL : GGGGTCCGGGGAGCAATGGAACAGCCAACCGACTTAAGGAGCCGCAGGAC
IRR : GGGGTCCGGGGAGCAATGGAACAGCGAACCGACTTAAGGGGGGCGTTTCC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGGTCCGGGGAGCAATGGAACAGCCAACCGACTTAAGGAGCCGCAGGACTCTCCTGAGCTCACGGTAATCTGCTCAATACGCTGTCCGAAAGAGGATCG
CTCAACGGACGCTGAGTAGTTAATCGCTAATTCTCGTAAATAGGCTCCATCAGCCATCTCATTTAGCTAGTACTAAATCTTTTGCAGTGAGGGTAGGTCT
TACGTTACAGTTTTTGCCATGACGCAAACCCTGATTGGCTATGCCCGCTGCTCGACCGACAAACAAGACCTCGCTGCACAGCAGGAGGCCCTGCTGAAAC
TCGGTGTGGCACCAGATCGTATTTACACTGACCCTGGGTTTACTGGGACAAACAGAGCGCGCCCAGGCCTCGATCAGGCCCTTGCGGCTGTGCGCAATGG
CGACACCCTTGTTGTCTCCAAACTTGATCGACTTGCCCGCTCCGTTCCTGATGCTCGCACGATCGGTGACAATCTTGCTGCTCGAGGAGTGAAGTTACAG
CTTGGGTCCAGCATTCATGATCCGACTGATCCCATGGGAAAGCTGTTTTTCAACATTCTCGCTACCTTCGCCGAGTTCGAGGCCGATTTGATCCGAATGC
GTACTCGTGAGGGCATGGCGGTCGCACGAGCTAAGGGAAAATTAAGAGGTAAGAAGCCCAAGCTCTCCGATCGGCAACAAAAGGAGCTACGGCGCATGTA
CGACACGAGTAACTATTCGATCAGTGATCTGGCTGAACTATTCTCAATCTCACGACCGACAGTCTATCGCACCCTCGCCCGGCAGGCGGTTTGATGTCAT
GCCAGTTAGCTTCCTGTCCTCTACCCAAAGGGAACGCTACGGTTGCTATCCAGATAGGCTTTCCAGCGAAGAACTGGCGCGCTACTTCCACTTGGACGAC
GATGACCGCGAGTGGATAAGCACTAAGCGACGTGACAGCAACCGACTCGGTTATGCGCTGCAATTGACGACGGCACGCTTTCTTGGCACCTTTCTGGAAG
ACCCTACTGCTGTTCCCTGCACAGTGCTACATACGCTGTCGTCGCAGCTCGGCATCGCCGACGCCAACTGCGTGCAGACCTACCGCGAGAGCGAACAGCG
TTGGCGACACACGACCGAGATTCGCGCTCGCTACGGTTACCGCGAGTTCGTTGAACGTGGCATGCAGTTCCGCCTTGGCCGCTGGCTGTGTGCGCTGTGC
TGGACGGGCACAGATCGGCCAAGCGCTTTATTTGACTACGCCAACGGCTGGTTGATCGGCCACAAGGTGTTGCTGCCAGGCGTCACGGTACTTGAACGCT
TCATCGCCGAGATACGCTCTCGTATGGAGTCGCGTCTGTGGCGTCTGCTAGTGCGTGGCGTGACGGACGAACAGTGTCAGCGCCTCGATGATCTGCTCAA
GCTTGCCAGTGGCAGCCGCCAATCGAGGTTGGATCGGTTACGTAAGGGGCCGGTGCGCGTCAGCGCCCCGGCACTTGTGATGGCACTACAACGCATTGAG
ACCGTGCGTGGCCTGGGCATCAAGCTTCCCGGCACCCATGTTCCGCCAAGCCGTATCGCAGCGTTGGCCCGCTTCGCTGGCACCGTCAAGGTGTCCGCCA
TAGCTCGGTTGCCGCAGGTGAGGCGTATCGCCACATTAGTGGCATTCGTCCACTGCCTGGAGGCCAGTGCGCAGGACGACGCGCTCGATGTGCTCGACTT
ACTACTGCGCGATCTATTCACCAAAGCTGAGAAGGAAAACCGTAAGGTCAGGCAGCGTACGATCAAAGATCTCGACCGGGCGGCTTCAACGCTGGCCGAA
GCCTGCCGGATACTGCTCGATTGTGGTCTGCCAGACAGCGAACTGCGCGAGCGCGTCTATGCGACGATTGGGCGCGATGCACTGGCTCAGGCGCTTGACG
AGGTTCGCGGCCTAGTGCGCCCACCCAACGATGTGTTCTACACAGAACTGGAGGGCAAGAAGGGCACCGTGACACGCTTCCTGCCGACGTTACTGCGCGT
CATCCGCTTCGACGCTACCCCGGCCGCGCAGCCTCTGATACAGGCATTGGAGTGGCTTCGCGAAAAGCCCGATCCCAATCCGTCGACCGCCATCGTCGGC
AAAGCGTGGTTGCGCCATGTCGTGCAGGACGATGGCCGGATCAATGCTACAGCCTATTCCTTCTGCACCCTCGACAAGCTGCGCAGCGCGATCCGCCGCC
GCGACGTGTTCATCAGTCCGAGTTGGCGCTATGCGGACCCGCGTACTGGTCTGCTGACCGGTGCCGAGTGGGAGACCGCAAGGCCCATCGTTTGCCGTTC
GCTGGGACTGAGCGTCCAGGCCGACGACACTTTGACCGCATTGACCCGCGAGCTGGACGAAACTTATCGGCGCGTTGCAGCACGCCTGCCCAAGAATGAC
GCAGTGCGCTTCGAAACAGTCGACGACAAGATCGAGCTAGTGCTCAGCCCGTTGGAAGCGTTGGAGGAACCGCCTTCACTGATCGCGCTGCGCAACGCAA
TCAAAGCACGCCTACCACGTGTCGATCTGCCGGAAATTCTTTTGGAAGTTGCCGGCCGCACTGGCTGTATGGATGCATTTACGCACTTGACCGAGCGTAC
CGCACGCGCTGGTGATCTGACTACCAGCCTGTGTGCGGTGCTGATGGCCGAAGCCTGCAATACCGGCCCCGAGCCACTGGTACGGCAGGACACGCCGGCG
CTCAAACGAGACCGGCTGATGTGGGTCGACCAGAACTACGTGCGCGACGACACGCTGATTGCCTGCAACGCTTTGTTGGTGGCCGCGCAGAACCGCATTG
CACTGGCGCACACCTGGGGCGGCGGCGATGTGGCCTCTGCCGATGGAATGCGTTTCGTGGTGCCGGTACGCACCATTCATGCCGCGCCGAACCCGAAATA
CTTCAATCTAGGGCGTGGCGTTACCTGGTATAACCTGTTGTCTGACCAGCGCACAGGATTGAACGCGATCACTGTGCCCGGCACCTTACGCGACAGCCTA
GTCTTGCTAGCGGTCGTGTTGGAGCAGCAGACCGAGTTGCAACCGACACAGATCATGACCGACACCGGAGCCTACAGCGATTTGGTATTCGGTCTGTTCC
GCCTCTGCAACTATCGCTTCTGTCCACGTCTGGCCGATGTCGGTGGCACGCGCTTCTGGCGCGTAGATCCCCAAGCTGATTATGGCGACCTCAACGCGCT
GGCACGGCAGCGCGTCAACCTCGACCGCATCACACCGCATTGGGACGACGTACTGCGTTTGATTGGTTCACTTAAACTTGGCCTGGTGCCCGCGATGGGC
ATCATGCGCACCTTGCAGGTCGATGAACGGCCGACCAGCCTGGCTCAGGCCATCGCCGAGATAGGCCGCATTGAGAAAACAATCCACATGCTGAATTTCA
TAGACGACGAGGCCAAACGTCGTGCCACACAGCTGCAACTCAATCTCGGTGAAGGACGCCACAGTCTGGCGCGCGAGGTCTTCCACGGTAAGCGCGGTGA
ACTGTTCCAACGTTACCGCGAAGGGCAGGAAGACCAGCTGAGCGCACTCGGCCTGGTCGTGAACATGATCGTGCTATGGAATACGGTGTACATGGATGCG
GTGCTGATGCAATTGCGCAGCGAGGGCTACCCAATACGTCCGGATGACGAGGCGCGGTTGTCGCCGTTCGGCCATGAGCACATCAACATGCTCGGGCGCT
ACTCGTTCTCAGTGCCGGAAGACGTCGCACGTGGTGAACTGCGGCCACTCAACGGCGGCGGCGAATCATGACGTATTCAAGAGCAGCCGCCACGATCTTC
AGCTACATGAGTTGCTGGCCCACAGATTGGGCACACACCCTACGGACTGGCGAGCACGTGTGGCCCAACACTTAGCGTGTCATTTAGCCGGAAACGCCCC
CCTTAAGTCGGTTCGCTGTTCCATTGCTCCCCGGACCCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
576 bp191 aa219794+No
ORF function : Accessory Gene
AG : Tn3 resolvase

ORF sequence :

MTQTLIGYARCSTDKQDLAAQQEALLKLGVAPDRIYTDPGFTGTNRARPGLDQALAAVRNGDTLVVSKLDRLARSVPDARTIGDNLAARGVKLQLGSSIH
DPTDPMGKLFFNILATFAEFEADLIRMRTREGMAVARAKGKLRGKKPKLSDRQQKELRRMYDTSNYSISDLAELFSISRPTVYRTLARQAV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
2973 bp990 aa7993771+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPVSFLSSTQRERYGCYPDRLSSEELARYFHLDDDDREWISTKRRDSNRLGYALQLTTARFLGTFLEDPTAVPCTVLHTLSSQLGIADANCVQTYRESEQ
RWRHTTEIRARYGYREFVERGMQFRLGRWLCALCWTGTDRPSALFDYANGWLIGHKVLLPGVTVLERFIAEIRSRMESRLWRLLVRGVTDEQCQRLDDLL
KLASGSRQSRLDRLRKGPVRVSAPALVMALQRIETVRGLGIKLPGTHVPPSRIAALARFAGTVKVSAIARLPQVRRIATLVAFVHCLEASAQDDALDVLD
LLLRDLFTKAEKENRKVRQRTIKDLDRAASTLAEACRILLDCGLPDSELRERVYATIGRDALAQALDEVRGLVRPPNDVFYTELEGKKGTVTRFLPTLLR
VIRFDATPAAQPLIQALEWLREKPDPNPSTAIVGKAWLRHVVQDDGRINATAYSFCTLDKLRSAIRRRDVFISPSWRYADPRTGLLTGAEWETARPIVCR
SLGLSVQADDTLTALTRELDETYRRVAARLPKNDAVRFETVDDKIELVLSPLEALEEPPSLIALRNAIKARLPRVDLPEILLEVAGRTGCMDAFTHLTER
TARAGDLTTSLCAVLMAEACNTGPEPLVRQDTPALKRDRLMWVDQNYVRDDTLIACNALLVAAQNRIALAHTWGGGDVASADGMRFVVPVRTIHAAPNPK
YFNLGRGVTWYNLLSDQRTGLNAITVPGTLRDSLVLLAVVLEQQTELQPTQIMTDTGAYSDLVFGLFRLCNYRFCPRLADVGGTRFWRVDPQADYGDLNA
LARQRVNLDRITPHWDDVLRLIGSLKLGLVPAMGIMRTLQVDERPTSLAQAIAEIGRIEKTIHMLNFIDDEAKRRATQLQLNLGEGRHSLAREVFHGKRG
ELFQRYREGQEDQLSALGLVVNMIVLWNTVYMDAVLMQLRSEGYPIRPDDEARLSPFGHEHINMLGRYSFSVPEDVARGELRPLNGGGES

 

Blast result :
Comments
The transposase of ISPsy39 is 94% aa similar to the transposase of ISXc4.
References
1] Butler M. (2016) Direct submission to ISfinder