ISAav2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF086815 ND Acidovorax avenae
Acidovorax avenae subsp. citrulli
DNA section
IS Length : 1031 bp

Ends


IR Length : 14/16

IRL : GCGTTGTTGCACAAATGCCGGTCGCAGCTGAGGTAGGCTCGGGAGATGAG
IRR : GCTTTGTTGCATAAATCGGCCATAGGCCAAGGCATCCCCAATCCCAAATA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GCGTTGTTGCACAAATGCCGGTCGCAGCTGAGGTAGGCTCGGGAGATGAGAGAGACGAGCTGGGGTCGGGTTAAGTACCGCACAACGAACTGGAAGGCTT
ACAACGCAGCGTTGAAGGCGCGAGGTGAGCTGACCATTTGGCTCGATAGGGATATGCAGTGGCTAGCTCGGCCCACGGGCAAGCGTGGTCGTTGCCAGAA
GTTCTCAGATGCGGCCATCCAGTTTTGCCTGACCATCAAGTGCTTGTTTGGCCAGCCCTTGCGCCAGACACTGGGCCTGGTTGAGTCGCTATTGGGTATG
GCAGGCCTGCATTGGCCAGTGCCCGACTACAGCACGGTGTGTCGCAGGCAAAAGAGCTTGGATGTGCAGGTGCGCTACCGTGCAAGTGACAAAGGCTTGC
ACATGCTGGCCGACTCCACGGGCATCAAGTTCTTGGGCGAAGGTGAGTGGAAAACCAAAAAGCACGGTGCCGAGCGCCGCCGCCAGTGGCGCAAGGTGCA
TCTGGGTATTGATGCCCAGACACTGCAGATTCGGGCCATCGCAGTAACAACCAATGAAGTGGGCGACTCGCCCATGGCAGCAGACCTGCTAGGTCAAATT
CCAAGCAATGAAGAGATAGCTAGCTTTACCGGTGATGGGGCGTACGACACGCAGGATGTACATAAGGCGTGCTACCTGCGGGGAGCCATTCCAATCATCC
CGCCGCGCAAAGGAGCGAAGCTGCGCAAAGGGCTGGCATTTGCTCACCGCAATGAAGCGGTCAAGGCGTGTAGGCAGTTGGGGCGGGCTATCTGGAAACG
CTGGAGCGGCTACCACCGAAGGTCACTGGTGGAGACCAAGATGAATTGCTTCAAGCGCCTGGGCGAGAAGGTGATGGCCAGGACGTTTGAGCGCCAGGTG
ACCGAGCTGCACATCCGAGCTTCAATCCTCAATCAATTTACCGCTCTGGGCACGCCCCAGACAGTCGCTGCTGCGTAAATCTATTTGGGATTGGGGATGC
CTTGGCCTATGGCCGATTTATGCAACAAAGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa46978+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRETSWGRVKYRTTNWKAYNAALKARGELTIWLDRDMQWLARPTGKRGRCQKFSDAAIQFCLTIKCLFGQPLRQTLGLVESLLGMAGLHWPVPDYSTVCR
RQKSLDVQVRYRASDKGLHMLADSTGIKFLGEGEWKTKKHGAERRRQWRKVHLGIDAQTLQIRAIAVTTNEVGDSPMAADLLGQIPSNEEIASFTGDGAY
DTQDVHKACYLRGAIPIIPPRKGAKLRKGLAFAHRNEAVKACRQLGRAIWKRWSGYHRRSLVETKMNCFKRLGEKVMARTFERQVTELHIRASILNQFTA
LGTPQTVAAA

 

Blast result :
Comments
ISAav2 is 57% aa similar to IS1420.
References
1] Eaton, R.W. (2001) Direct submission GenBank.