ISAhi1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FOPC01000018 ND Algoriphagus hitonicola
Algoriphagus hitonicola DSM 19315
DNA section
IS Length : 1040 bp

Ends


IR Length : 19/25

IRL : TATGACTCTACGGAATCGTGCACGTTGCCAAATTTTCTTTGACAGCCCAT
IRR : AATGACTATTCGCAATGTTGCACGTAAGGGTAAACTGAGGCGATAATTAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTAGACTTATCGCATTATTTTATCTAATTTTCCGAC8

DNA sequence

TATGACTCTACGGAATCGTGCACGTTGCCAAATTTTCTTTGACAGCCCATGTCAATTGTTTTCGTAGTTTATTGAAGTGGTGTTTCTTGGATAAAAATAC
ATAAAGCCATGAATATCATTGAATTTATAACATATTTTCCAGACGAGGAAAGCTGTGAGATCTTCCTGAAAACCTACCGTGAAAACAGCGGTATTTACTG
CAAAACCTGTAAATGTTTTCCTAAACAGTATTGGTATAGCGGAAGCAAGTTTTTTGAGTGCAGTAAATGCAGGCGAAGGACTTCTCTCAAGGCGGGGACA
GTGGTGGAGGCAAGCAATTTGTCTCTACACATCTGGTTTACTGCGTTTTTGTTGATGTCTGCCACCAAAAAGGGCTTTTCCTGCCTTGAATTTCAGAGAC
AGTTAGGGTTGAAAAGATATGAGACCGCATTCAATTTGATGCACAAGATCAGAGCGATAATGGGCAAAAGAGACGATCTGTACCTACTCAAAGGCATGGT
GGAATACGATGAAGCGTATGTGGAGAAAGCCACCAAAAAAGTGGTTCAGGAGCGGTTGAAGCGAGGAAAAGGAAGTCAGAAACAGGCGATAGTAGCCGTT
GCCTCAGAATCAACCCCTCTGGAAGATCCGCTGTCAGGAAAAATGAGCAGCCATTGCGGCTTTTTAAAAATGAAAGCGCTGGGCGATGTGACCAGAGAAT
CGGTGGAGGAGTTTGTAAAAGAGTCCATTGATTCCAAATCGGCCCTGTTTACTGATAAAAACGCAGCTTATGTAAACCTGGAAAAGATGGTGGAACAACA
CATCAAAGTAAAATCTACCTCAGAATCCACCAACGGCGCATTAAACTGGGTGCACACAGCTATCAGCAACTTGAAAAAGAACCTGTTGGGGATCTACCAC
ATGGTCAGTGAAAAGTACCTACAGAATTACCTAAACGAGTTTACCTACAAGCTCAATCGTAGATATTTTGGCGAAAAACTGTTCAACAGACTAATTATCG
CCTCAGTTTACCCTTACGTGCAACATTGCGAATAGTCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa1091035+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIIEFITYFPDEESCEIFLKTYRENSGIYCKTCKCFPKQYWYSGSKFFECSKCRRRTSLKAGTVVEASNLSLHIWFTAFLLMSATKKGFSCLEFQRQLG
LKRYETAFNLMHKIRAIMGKRDDLYLLKGMVEYDEAYVEKATKKVVQERLKRGKGSQKQAIVAVASESTPLEDPLSGKMSSHCGFLKMKALGDVTRESVE
EFVKESIDSKSALFTDKNAAYVNLEKMVEQHIKVKSTSESTNGALNWVHTAISNLKKNLLGIYHMVSEKYLQNYLNEFTYKLNRRYFGEKLFNRLIIASV
YPYVQHCE

 

Blast result :
Comments
ISAhi1 is 91% aa similar to ISAfa1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.