ISPba3

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNQW01000074 ND Porphyromonadaceae bacterium
Porphyromonadaceae bacterium KH3R12
DNA section
IS Length : 2609 bp

Ends


IR Length : 19/22

IRL : GTAAGCATTCGGTAAACCCCGTCCTATTTTAACTTCTGATCCTTGCTATA
IRR : GTAAGCATTCGGTGATGCCCGTATTTGATTTTATTATTACCTGATCTATG

Insertion site


Left flankDirect repeatRight flankDR Length
TATCATTAGTGTCCACTATAGATACATATTA0

DNA sequence

GTAAGCATTCGGTAAACCCCGTCCTATTTTAACTTCTGATCCTTGCTATATTTGCCCATAAAAAATAACATGTGGACATTACAGCAGTTTGAGGAGATAT
TTGATCGTTACCAGTCCAGCGGGCTTCGCATAAAAGAGTTTTGCCGGAACGAGTCAATCGTTGAATCCAGGTTTTATTACTGGCAGAAGAGATTGCAGGA
GCACAACTACAGAACAGTTCGAGAGTCCGGTTTTGTTCCGATCGTCTTTACCGGTTCCAATTCATTGCCTGCAAACAAAGCAGTCCATCAAAAACCGATT
CCGGTGCATGTTGATCCCATACCAGGGAATTTTCTAGAAATAGTCTATCCCAATGGCGTTAAAGTGCGTGTTCCCATTGGGACTGATCCGACTCAGCTGC
GTTCATTAATCCTTTTAACCCAGTAAGCCATGTTCAATCTGAACGCCTCGATGCGTTACTGGCTTTACCCTTTTCCAACGGACATGCGTAAAGGGTTCTA
CACTTTAAGCGGGCTGGTCACTGAGGGGATGGGACAGGATGTACGCAGCGGTGACGTGTTCATCTTTCTGAACCGTCATTGCACGAGCATGAAAGCATTG
CACATGGAGCACGGCGGACTGGTGATCTACTACATGAAACTGGAGAAAGGCAATTTTGCACTGCCCCCGCTTGATGAAAAAGGCAAAACTCACCCCTTTT
CCTGGCAAAAACTGATGCTGATGGTACAGGGTATTAACGCTGAAAAATGTCACTACAAAAAACGCTGGGAAAGCCCATAAACAGACGATTTTAGTTGCCT
TTTCCTTTGCATTTATTGCTTCTTTTTTGTATCTTTACTCTCGTAATCTGACAGAAAAAGATGCAAGAAAACAAGGAAAATCCGAACGAACTTCTCGAAA
TCCTTTTGGAGAAATGCGACCGTTTATATCAGGAGAATATGCTCCTGAAGGGTAAACTGGAAGATCGCACGGATGTTGATGCATTAAAATCCTCTTACGA
GAAAACCCTGTCCGAGAAGGATACTAAGATCGTCTACCTGGAAAAGCAGGTAGCTTATCTCAGGCGCCGCATATGGGGCAAATCCAGTGAACGTTATATC
CAGGCAGATCCACAGCAGCGACGGATAGACTTTGACGGTCTTGACCTGTTGCCAGGGGAAAAGGAGCTTGCAGAGGCGGCCAAGGTTCAAATAGAGGCCT
TCAGGGAAAGACGCGTGAAGGAACAGGTGAAACGAAAACCGGTTCGCAAGCCTTTACCCGAAGATCTGCCACGTGTAGAGGAGCACCTTTACCCCGCTGA
AATAAGTGACAACAAGGATGCATGGACCGAGCTGGAGCCGGAGATCACCGAAGTGCTGGAGTATGAACCGGGGAGATGCTATGTCCGAAAGATTGTCCGT
CACAAGTATGTTCAAAAAAACAAGTCATCACAGGAGTCTGGAGAGGAGTCTTCTCCCATTGTTACGGCATCACTCCCGACAAGATACCAGCCTATCGCAC
GCAGTTATGCCGGAGCCTCACTTCTGGCGGAGCTGATGATAAACAAGTACGTGAATCACCTGCCCTTCTACCGCCAGATACAGATGATGAAACAGATGGG
TGCCAATCTGCCACCACCCACGGTCAATGATTGGTTCAAAGATACAGCCGACCTGCTCAGGCCACTTTATTATCGACTCAAGGAACTGGTTCTTGCCACC
GATTACATCCAGGTGGACGAGACAACCGTGCCCGTGATCAACGACGAGAAGCATAAAACCGTCAACGGGTACATCTGGATGGTACGATCCGTCATGGATT
CACAGCTCTTCTTCCATTATGACCATGGTTCAAGGGCCCAGAACGTTGCCTTGTCCCTGTTGAAGGACTTCCAGGGTGCCATGCAGACGGACGGGTACGG
TGTGTACAAGATCTACGAACAGAAACAGGGCGTACTGCCCCTGGGATGTTGTGCCCATGCCAGAAGGAAGTTTGAAGAGTCATTGAAGAATGACAGATCC
AGGGCCGAGTATGCCCTTGAACAGATCGGCCTTCTCTACGAGGTGGAAAGGGAAGCCGATGAGAGGAATCTCTCCTGTCAGGAGAGGGCGAATCTCAGGG
AGAGTCATGCTTACCCCATCATGGTTGCCTTTGAAAAGTGGTTGGTGCGTGAATATGAAAAGGTTCTGCCCAAGAGCCCGATAGGAAAGGCGATAAAGTA
CACTTATGACATCTACCACCGTTTGACACGTTACCACCTGGATGGCAGATACCGCATTGACAATAATCTCGCCGAAAACAGCCTGAGAGGCCTGGCCCTG
GGTAGAAAGAATTACCTTTTTTGCGGTAACCATGACGCTGCCGAGGATGCTGCAGTCATGTACTCGTTGCTGGGGTGCTGCAAGGCTTCCGATGTGAACT
TCCGCGACTGGATGGTGTATGTGCTGAGCCATATACACGACTATGACGAAGACTACACCAGAGATCTTGCAGAACTGCTCCCGGGTAACTACTCCAGGAG
AAACTCCTAAAAACTCCACATCGACTCCGAATGTTTTGGAGGTTTTGAAAGTCCACTTTCATAGATCAGGTAATAATAAAATCAAATACGGGCATCACCG
AATGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
357 bp118 aa70426+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MWTLQQFEEIFDRYQSSGLRIKEFCRNESIVESRFYYWQKRLQEHNYRTVRESGFVPIVFTGSNSLPANKAVHQKPIPVHVDPIPGNFLEIVYPNGVKVR
VPIGTDPTQLRSLILLTQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
351 bp116 aa430780+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MFNLNASMRYWLYPFPTDMRKGFYTLSGLVTEGMGQDVRSGDVFIFLNRHCTSMKALHMEHGGLVIYYMKLEKGNFALPPLDEKGKTHPFSWQKLMLMVQ
GINAEKCHYKKRWESP

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1650 bp549 aa8612510+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQENKENPNELLEILLEKCDRLYQENMLLKGKLEDRTDVDALKSSYEKTLSEKDTKIVYLEKQVAYLRRRIWGKSSERYIQADPQQRRIDFDGLDLLPGE
KELAEAAKVQIEAFRERRVKEQVKRKPVRKPLPEDLPRVEEHLYPAEISDNKDAWTELEPEITEVLEYEPGRCYVRKIVRHKYVQKNKSSQESGEESSPI
VTASLPTRYQPIARSYAGASLLAELMINKYVNHLPFYRQIQMMKQMGANLPPPTVNDWFKDTADLLRPLYYRLKELVLATDYIQVDETTVPVINDEKHKT
VNGYIWMVRSVMDSQLFFHYDHGSRAQNVALSLLKDFQGAMQTDGYGVYKIYEQKQGVLPLGCCAHARRKFEESLKNDRSRAEYALEQIGLLYEVEREAD
ERNLSCQERANLRESHAYPIMVAFEKWLVREYEKVLPKSPIGKAIKYTYDIYHRLTRYHLDGRYRIDNNLAENSLRGLALGRKNYLFCGNHDAAEDAAVM
YSLLGCCKASDVNFRDWMVYVLSHIHDYDEDYTRDLAELLPGNYSRRNS

 

Blast result :
Comments
ISPba3 is 72% (transposase) aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.