ISPba3
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNQW01000074 | ND | Porphyromonadaceae bacterium | Porphyromonadaceae bacterium KH3R12 |
DNA section
IS Length : 2609 bp
Ends
IR Length : 19/22
IRL : GTAAGCATTCGGTAAACCCCGTCCTATTTTAACTTCTGATCCTTGCTATA
IRR : GTAAGCATTCGGTGATGCCCGTATTTGATTTTATTATTACCTGATCTATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATCATTAGTGTCCACT | ATAGATACATATTA | 0 |
DNA sequence
GTAAGCATTCGGTAAACCCCGTCCTATTTTAACTTCTGATCCTTGCTATATTTGCCCATAAAAAATAACATGTGGACATTACAGCAGTTTGAGGAGATAT
TTGATCGTTACCAGTCCAGCGGGCTTCGCATAAAAGAGTTTTGCCGGAACGAGTCAATCGTTGAATCCAGGTTTTATTACTGGCAGAAGAGATTGCAGGA
GCACAACTACAGAACAGTTCGAGAGTCCGGTTTTGTTCCGATCGTCTTTACCGGTTCCAATTCATTGCCTGCAAACAAAGCAGTCCATCAAAAACCGATT
CCGGTGCATGTTGATCCCATACCAGGGAATTTTCTAGAAATAGTCTATCCCAATGGCGTTAAAGTGCGTGTTCCCATTGGGACTGATCCGACTCAGCTGC
GTTCATTAATCCTTTTAACCCAGTAAGCCATGTTCAATCTGAACGCCTCGATGCGTTACTGGCTTTACCCTTTTCCAACGGACATGCGTAAAGGGTTCTA
CACTTTAAGCGGGCTGGTCACTGAGGGGATGGGACAGGATGTACGCAGCGGTGACGTGTTCATCTTTCTGAACCGTCATTGCACGAGCATGAAAGCATTG
CACATGGAGCACGGCGGACTGGTGATCTACTACATGAAACTGGAGAAAGGCAATTTTGCACTGCCCCCGCTTGATGAAAAAGGCAAAACTCACCCCTTTT
CCTGGCAAAAACTGATGCTGATGGTACAGGGTATTAACGCTGAAAAATGTCACTACAAAAAACGCTGGGAAAGCCCATAAACAGACGATTTTAGTTGCCT
TTTCCTTTGCATTTATTGCTTCTTTTTTGTATCTTTACTCTCGTAATCTGACAGAAAAAGATGCAAGAAAACAAGGAAAATCCGAACGAACTTCTCGAAA
TCCTTTTGGAGAAATGCGACCGTTTATATCAGGAGAATATGCTCCTGAAGGGTAAACTGGAAGATCGCACGGATGTTGATGCATTAAAATCCTCTTACGA
GAAAACCCTGTCCGAGAAGGATACTAAGATCGTCTACCTGGAAAAGCAGGTAGCTTATCTCAGGCGCCGCATATGGGGCAAATCCAGTGAACGTTATATC
CAGGCAGATCCACAGCAGCGACGGATAGACTTTGACGGTCTTGACCTGTTGCCAGGGGAAAAGGAGCTTGCAGAGGCGGCCAAGGTTCAAATAGAGGCCT
TCAGGGAAAGACGCGTGAAGGAACAGGTGAAACGAAAACCGGTTCGCAAGCCTTTACCCGAAGATCTGCCACGTGTAGAGGAGCACCTTTACCCCGCTGA
AATAAGTGACAACAAGGATGCATGGACCGAGCTGGAGCCGGAGATCACCGAAGTGCTGGAGTATGAACCGGGGAGATGCTATGTCCGAAAGATTGTCCGT
CACAAGTATGTTCAAAAAAACAAGTCATCACAGGAGTCTGGAGAGGAGTCTTCTCCCATTGTTACGGCATCACTCCCGACAAGATACCAGCCTATCGCAC
GCAGTTATGCCGGAGCCTCACTTCTGGCGGAGCTGATGATAAACAAGTACGTGAATCACCTGCCCTTCTACCGCCAGATACAGATGATGAAACAGATGGG
TGCCAATCTGCCACCACCCACGGTCAATGATTGGTTCAAAGATACAGCCGACCTGCTCAGGCCACTTTATTATCGACTCAAGGAACTGGTTCTTGCCACC
GATTACATCCAGGTGGACGAGACAACCGTGCCCGTGATCAACGACGAGAAGCATAAAACCGTCAACGGGTACATCTGGATGGTACGATCCGTCATGGATT
CACAGCTCTTCTTCCATTATGACCATGGTTCAAGGGCCCAGAACGTTGCCTTGTCCCTGTTGAAGGACTTCCAGGGTGCCATGCAGACGGACGGGTACGG
TGTGTACAAGATCTACGAACAGAAACAGGGCGTACTGCCCCTGGGATGTTGTGCCCATGCCAGAAGGAAGTTTGAAGAGTCATTGAAGAATGACAGATCC
AGGGCCGAGTATGCCCTTGAACAGATCGGCCTTCTCTACGAGGTGGAAAGGGAAGCCGATGAGAGGAATCTCTCCTGTCAGGAGAGGGCGAATCTCAGGG
AGAGTCATGCTTACCCCATCATGGTTGCCTTTGAAAAGTGGTTGGTGCGTGAATATGAAAAGGTTCTGCCCAAGAGCCCGATAGGAAAGGCGATAAAGTA
CACTTATGACATCTACCACCGTTTGACACGTTACCACCTGGATGGCAGATACCGCATTGACAATAATCTCGCCGAAAACAGCCTGAGAGGCCTGGCCCTG
GGTAGAAAGAATTACCTTTTTTGCGGTAACCATGACGCTGCCGAGGATGCTGCAGTCATGTACTCGTTGCTGGGGTGCTGCAAGGCTTCCGATGTGAACT
TCCGCGACTGGATGGTGTATGTGCTGAGCCATATACACGACTATGACGAAGACTACACCAGAGATCTTGCAGAACTGCTCCCGGGTAACTACTCCAGGAG
AAACTCCTAAAAACTCCACATCGACTCCGAATGTTTTGGAGGTTTTGAAAGTCCACTTTCATAGATCAGGTAATAATAAAATCAAATACGGGCATCACCG
AATGCTTAC
TTGATCGTTACCAGTCCAGCGGGCTTCGCATAAAAGAGTTTTGCCGGAACGAGTCAATCGTTGAATCCAGGTTTTATTACTGGCAGAAGAGATTGCAGGA
GCACAACTACAGAACAGTTCGAGAGTCCGGTTTTGTTCCGATCGTCTTTACCGGTTCCAATTCATTGCCTGCAAACAAAGCAGTCCATCAAAAACCGATT
CCGGTGCATGTTGATCCCATACCAGGGAATTTTCTAGAAATAGTCTATCCCAATGGCGTTAAAGTGCGTGTTCCCATTGGGACTGATCCGACTCAGCTGC
GTTCATTAATCCTTTTAACCCAGTAAGCCATGTTCAATCTGAACGCCTCGATGCGTTACTGGCTTTACCCTTTTCCAACGGACATGCGTAAAGGGTTCTA
CACTTTAAGCGGGCTGGTCACTGAGGGGATGGGACAGGATGTACGCAGCGGTGACGTGTTCATCTTTCTGAACCGTCATTGCACGAGCATGAAAGCATTG
CACATGGAGCACGGCGGACTGGTGATCTACTACATGAAACTGGAGAAAGGCAATTTTGCACTGCCCCCGCTTGATGAAAAAGGCAAAACTCACCCCTTTT
CCTGGCAAAAACTGATGCTGATGGTACAGGGTATTAACGCTGAAAAATGTCACTACAAAAAACGCTGGGAAAGCCCATAAACAGACGATTTTAGTTGCCT
TTTCCTTTGCATTTATTGCTTCTTTTTTGTATCTTTACTCTCGTAATCTGACAGAAAAAGATGCAAGAAAACAAGGAAAATCCGAACGAACTTCTCGAAA
TCCTTTTGGAGAAATGCGACCGTTTATATCAGGAGAATATGCTCCTGAAGGGTAAACTGGAAGATCGCACGGATGTTGATGCATTAAAATCCTCTTACGA
GAAAACCCTGTCCGAGAAGGATACTAAGATCGTCTACCTGGAAAAGCAGGTAGCTTATCTCAGGCGCCGCATATGGGGCAAATCCAGTGAACGTTATATC
CAGGCAGATCCACAGCAGCGACGGATAGACTTTGACGGTCTTGACCTGTTGCCAGGGGAAAAGGAGCTTGCAGAGGCGGCCAAGGTTCAAATAGAGGCCT
TCAGGGAAAGACGCGTGAAGGAACAGGTGAAACGAAAACCGGTTCGCAAGCCTTTACCCGAAGATCTGCCACGTGTAGAGGAGCACCTTTACCCCGCTGA
AATAAGTGACAACAAGGATGCATGGACCGAGCTGGAGCCGGAGATCACCGAAGTGCTGGAGTATGAACCGGGGAGATGCTATGTCCGAAAGATTGTCCGT
CACAAGTATGTTCAAAAAAACAAGTCATCACAGGAGTCTGGAGAGGAGTCTTCTCCCATTGTTACGGCATCACTCCCGACAAGATACCAGCCTATCGCAC
GCAGTTATGCCGGAGCCTCACTTCTGGCGGAGCTGATGATAAACAAGTACGTGAATCACCTGCCCTTCTACCGCCAGATACAGATGATGAAACAGATGGG
TGCCAATCTGCCACCACCCACGGTCAATGATTGGTTCAAAGATACAGCCGACCTGCTCAGGCCACTTTATTATCGACTCAAGGAACTGGTTCTTGCCACC
GATTACATCCAGGTGGACGAGACAACCGTGCCCGTGATCAACGACGAGAAGCATAAAACCGTCAACGGGTACATCTGGATGGTACGATCCGTCATGGATT
CACAGCTCTTCTTCCATTATGACCATGGTTCAAGGGCCCAGAACGTTGCCTTGTCCCTGTTGAAGGACTTCCAGGGTGCCATGCAGACGGACGGGTACGG
TGTGTACAAGATCTACGAACAGAAACAGGGCGTACTGCCCCTGGGATGTTGTGCCCATGCCAGAAGGAAGTTTGAAGAGTCATTGAAGAATGACAGATCC
AGGGCCGAGTATGCCCTTGAACAGATCGGCCTTCTCTACGAGGTGGAAAGGGAAGCCGATGAGAGGAATCTCTCCTGTCAGGAGAGGGCGAATCTCAGGG
AGAGTCATGCTTACCCCATCATGGTTGCCTTTGAAAAGTGGTTGGTGCGTGAATATGAAAAGGTTCTGCCCAAGAGCCCGATAGGAAAGGCGATAAAGTA
CACTTATGACATCTACCACCGTTTGACACGTTACCACCTGGATGGCAGATACCGCATTGACAATAATCTCGCCGAAAACAGCCTGAGAGGCCTGGCCCTG
GGTAGAAAGAATTACCTTTTTTGCGGTAACCATGACGCTGCCGAGGATGCTGCAGTCATGTACTCGTTGCTGGGGTGCTGCAAGGCTTCCGATGTGAACT
TCCGCGACTGGATGGTGTATGTGCTGAGCCATATACACGACTATGACGAAGACTACACCAGAGATCTTGCAGAACTGCTCCCGGGTAACTACTCCAGGAG
AAACTCCTAAAAACTCCACATCGACTCCGAATGTTTTGGAGGTTTTGAAAGTCCACTTTCATAGATCAGGTAATAATAAAATCAAATACGGGCATCACCG
AATGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
357 bp | 118 aa | 70 | 426 | + | No |
AG : IS66 TnpA
ORF sequence :
MWTLQQFEEIFDRYQSSGLRIKEFCRNESIVESRFYYWQKRLQEHNYRTVRESGFVPIVFTGSNSLPANKAVHQKPIPVHVDPIPGNFLEIVYPNGVKVR
VPIGTDPTQLRSLILLTQ
VPIGTDPTQLRSLILLTQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
351 bp | 116 aa | 430 | 780 | + | No |
AG : IS66 TnpB
ORF sequence :
MFNLNASMRYWLYPFPTDMRKGFYTLSGLVTEGMGQDVRSGDVFIFLNRHCTSMKALHMEHGGLVIYYMKLEKGNFALPPLDEKGKTHPFSWQKLMLMVQ
GINAEKCHYKKRWESP
GINAEKCHYKKRWESP
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1650 bp | 549 aa | 861 | 2510 | + | No |
Chemistry : DDE
ORF sequence :
MQENKENPNELLEILLEKCDRLYQENMLLKGKLEDRTDVDALKSSYEKTLSEKDTKIVYLEKQVAYLRRRIWGKSSERYIQADPQQRRIDFDGLDLLPGE
KELAEAAKVQIEAFRERRVKEQVKRKPVRKPLPEDLPRVEEHLYPAEISDNKDAWTELEPEITEVLEYEPGRCYVRKIVRHKYVQKNKSSQESGEESSPI
VTASLPTRYQPIARSYAGASLLAELMINKYVNHLPFYRQIQMMKQMGANLPPPTVNDWFKDTADLLRPLYYRLKELVLATDYIQVDETTVPVINDEKHKT
VNGYIWMVRSVMDSQLFFHYDHGSRAQNVALSLLKDFQGAMQTDGYGVYKIYEQKQGVLPLGCCAHARRKFEESLKNDRSRAEYALEQIGLLYEVEREAD
ERNLSCQERANLRESHAYPIMVAFEKWLVREYEKVLPKSPIGKAIKYTYDIYHRLTRYHLDGRYRIDNNLAENSLRGLALGRKNYLFCGNHDAAEDAAVM
YSLLGCCKASDVNFRDWMVYVLSHIHDYDEDYTRDLAELLPGNYSRRNS
KELAEAAKVQIEAFRERRVKEQVKRKPVRKPLPEDLPRVEEHLYPAEISDNKDAWTELEPEITEVLEYEPGRCYVRKIVRHKYVQKNKSSQESGEESSPI
VTASLPTRYQPIARSYAGASLLAELMINKYVNHLPFYRQIQMMKQMGANLPPPTVNDWFKDTADLLRPLYYRLKELVLATDYIQVDETTVPVINDEKHKT
VNGYIWMVRSVMDSQLFFHYDHGSRAQNVALSLLKDFQGAMQTDGYGVYKIYEQKQGVLPLGCCAHARRKFEESLKNDRSRAEYALEQIGLLYEVEREAD
ERNLSCQERANLRESHAYPIMVAFEKWLVREYEKVLPKSPIGKAIKYTYDIYHRLTRYHLDGRYRIDNNLAENSLRGLALGRKNYLFCGNHDAAEDAAVM
YSLLGCCKASDVNFRDWMVYVLSHIHDYDEDYTRDLAELLPGNYSRRNS
Blast result :
Comments
ISPba3 is 72% (transposase) aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.