ISPba2
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNQW01000074 | ND | Porphyromonadaceae bacterium | Porphyromonadaceae bacterium KH3R12 |
DNA section
IS Length : 1091 bp
Ends
IR Length : 20/24
IRL : TATGATTATCCGCAACCAGTCCTAAACATTTATTAGGATAATTGCAGGAA
IRR : TATGATTATCCGCAATATGACCTATTGTAAATTTTCGATTTGAAATCGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATCAGTTAATAAAAAAATAA | TAGTTTTATTTTTAAGTA | 0 |
DNA sequence
TATGATTATCCGCAACCAGTCCTAAACATTTATTAGGATAATTGCAGGAAAATCGGTTGATAATTAACGATATATGTTTTCTCATATCAAAGAGAATCTG
TATATTTATAGTCTAAATGTCAATAGATTATGAATCTGATTCAATTTATTCAAGAGTTTCCCGACGAGGCCGCTTGCCGCCAAAAATTCAAGGAGGAGCG
CGACAAAATCGGTATTACCTGTAAAAGATGTAACTGCAAGGATCATTACTGGCTTGAAAACAAGTCGAGCTACGAATGCAAGAAGTGCCACTCCCGCACC
TCGCTGCGGTCAGGCACGGTGATGGAGAACTCGAAGCTTCCCTTCCGTTATTGGCTCCTTGCCATTCACTTGCTGACAAGCACCAGGAAATCATTCTCCA
CGGAAGAACTTCGCCGACAATTGGGGCACAAGCGATACCAGCCCATCTGGGAGATGGTTTGCAAACTGCGTGAAGTAATGGGTAAACGTGATGACAAATA
CAAGCTGGCCGGCCAGATCGAACTCGACGACGCGTTTTTCACCTCCGAAGTCCCCGAAGACCAGAAGGGTAAACCCCTGAAAAGGGGACGGGGCAGCCAA
AGCAAGGCAAAAGTGCTGGTGATGTGCGAAAGCACTCCCCGGGATACCCCGAAGAAGGGACGCAAGGATAAGAAGGCCGGTCACCTGAAGATGAAAGTCA
TTCCCGATTTAAAATCCGGTACAATTACATCAGTTGTCAAAGAGCGTGTCGACGGGGAGTCGGACCTGACGAGTGACGATTCCACGTCCTATGTGAAACT
GGAACAGCTCGTAAATTCGCATACCTCCCGGGTTGTCAAACCCGAAGAGGTGGAGAAGGTGCTTCCCTGGGTGCACACGGCAATCAGCAATGTCAAACGG
CTGCTACTGGACGTGCACCACAATAAACTCAAACCCGAATACCTGCAATACTACCTCAATGAATTCTGTTATAAGTTTAATCGGAGATTCTTTCCGGAGA
AACTTTTCGACAGGCTTGTCATTGCCGCTGTGTCGTACTGCCCCGATTTCAAATCGAAAATTTACAATAGGTCATATTGCGGATAATCATA
TATATTTATAGTCTAAATGTCAATAGATTATGAATCTGATTCAATTTATTCAAGAGTTTCCCGACGAGGCCGCTTGCCGCCAAAAATTCAAGGAGGAGCG
CGACAAAATCGGTATTACCTGTAAAAGATGTAACTGCAAGGATCATTACTGGCTTGAAAACAAGTCGAGCTACGAATGCAAGAAGTGCCACTCCCGCACC
TCGCTGCGGTCAGGCACGGTGATGGAGAACTCGAAGCTTCCCTTCCGTTATTGGCTCCTTGCCATTCACTTGCTGACAAGCACCAGGAAATCATTCTCCA
CGGAAGAACTTCGCCGACAATTGGGGCACAAGCGATACCAGCCCATCTGGGAGATGGTTTGCAAACTGCGTGAAGTAATGGGTAAACGTGATGACAAATA
CAAGCTGGCCGGCCAGATCGAACTCGACGACGCGTTTTTCACCTCCGAAGTCCCCGAAGACCAGAAGGGTAAACCCCTGAAAAGGGGACGGGGCAGCCAA
AGCAAGGCAAAAGTGCTGGTGATGTGCGAAAGCACTCCCCGGGATACCCCGAAGAAGGGACGCAAGGATAAGAAGGCCGGTCACCTGAAGATGAAAGTCA
TTCCCGATTTAAAATCCGGTACAATTACATCAGTTGTCAAAGAGCGTGTCGACGGGGAGTCGGACCTGACGAGTGACGATTCCACGTCCTATGTGAAACT
GGAACAGCTCGTAAATTCGCATACCTCCCGGGTTGTCAAACCCGAAGAGGTGGAGAAGGTGCTTCCCTGGGTGCACACGGCAATCAGCAATGTCAAACGG
CTGCTACTGGACGTGCACCACAATAAACTCAAACCCGAATACCTGCAATACTACCTCAATGAATTCTGTTATAAGTTTAATCGGAGATTCTTTCCGGAGA
AACTTTTCGACAGGCTTGTCATTGCCGCTGTGTCGTACTGCCCCGATTTCAAATCGAAAATTTACAATAGGTCATATTGCGGATAATCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 130 | 1086 | + | No |
Chemistry : DDE
ORF sequence :
MNLIQFIQEFPDEAACRQKFKEERDKIGITCKRCNCKDHYWLENKSSYECKKCHSRTSLRSGTVMENSKLPFRYWLLAIHLLTSTRKSFSTEELRRQLGH
KRYQPIWEMVCKLREVMGKRDDKYKLAGQIELDDAFFTSEVPEDQKGKPLKRGRGSQSKAKVLVMCESTPRDTPKKGRKDKKAGHLKMKVIPDLKSGTIT
SVVKERVDGESDLTSDDSTSYVKLEQLVNSHTSRVVKPEEVEKVLPWVHTAISNVKRLLLDVHHNKLKPEYLQYYLNEFCYKFNRRFFPEKLFDRLVIAA
VSYCPDFKSKIYNRSYCG
KRYQPIWEMVCKLREVMGKRDDKYKLAGQIELDDAFFTSEVPEDQKGKPLKRGRGSQSKAKVLVMCESTPRDTPKKGRKDKKAGHLKMKVIPDLKSGTIT
SVVKERVDGESDLTSDDSTSYVKLEQLVNSHTSRVVKPEEVEKVLPWVHTAISNVKRLLLDVHHNKLKPEYLQYYLNEFCYKFNRRFFPEKLFDRLVIAA
VSYCPDFKSKIYNRSYCG
Blast result :
Comments
ISPba2 is 76% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.