ISPba2

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNQW01000074 ND Porphyromonadaceae bacterium
Porphyromonadaceae bacterium KH3R12
DNA section
IS Length : 1091 bp

Ends


IR Length : 20/24

IRL : TATGATTATCCGCAACCAGTCCTAAACATTTATTAGGATAATTGCAGGAA
IRR : TATGATTATCCGCAATATGACCTATTGTAAATTTTCGATTTGAAATCGGG

Insertion site


Left flankDirect repeatRight flankDR Length
AATCAGTTAATAAAAAAATAATAGTTTTATTTTTAAGTA0

DNA sequence

TATGATTATCCGCAACCAGTCCTAAACATTTATTAGGATAATTGCAGGAAAATCGGTTGATAATTAACGATATATGTTTTCTCATATCAAAGAGAATCTG
TATATTTATAGTCTAAATGTCAATAGATTATGAATCTGATTCAATTTATTCAAGAGTTTCCCGACGAGGCCGCTTGCCGCCAAAAATTCAAGGAGGAGCG
CGACAAAATCGGTATTACCTGTAAAAGATGTAACTGCAAGGATCATTACTGGCTTGAAAACAAGTCGAGCTACGAATGCAAGAAGTGCCACTCCCGCACC
TCGCTGCGGTCAGGCACGGTGATGGAGAACTCGAAGCTTCCCTTCCGTTATTGGCTCCTTGCCATTCACTTGCTGACAAGCACCAGGAAATCATTCTCCA
CGGAAGAACTTCGCCGACAATTGGGGCACAAGCGATACCAGCCCATCTGGGAGATGGTTTGCAAACTGCGTGAAGTAATGGGTAAACGTGATGACAAATA
CAAGCTGGCCGGCCAGATCGAACTCGACGACGCGTTTTTCACCTCCGAAGTCCCCGAAGACCAGAAGGGTAAACCCCTGAAAAGGGGACGGGGCAGCCAA
AGCAAGGCAAAAGTGCTGGTGATGTGCGAAAGCACTCCCCGGGATACCCCGAAGAAGGGACGCAAGGATAAGAAGGCCGGTCACCTGAAGATGAAAGTCA
TTCCCGATTTAAAATCCGGTACAATTACATCAGTTGTCAAAGAGCGTGTCGACGGGGAGTCGGACCTGACGAGTGACGATTCCACGTCCTATGTGAAACT
GGAACAGCTCGTAAATTCGCATACCTCCCGGGTTGTCAAACCCGAAGAGGTGGAGAAGGTGCTTCCCTGGGTGCACACGGCAATCAGCAATGTCAAACGG
CTGCTACTGGACGTGCACCACAATAAACTCAAACCCGAATACCTGCAATACTACCTCAATGAATTCTGTTATAAGTTTAATCGGAGATTCTTTCCGGAGA
AACTTTTCGACAGGCTTGTCATTGCCGCTGTGTCGTACTGCCCCGATTTCAAATCGAAAATTTACAATAGGTCATATTGCGGATAATCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa1301086+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLIQFIQEFPDEAACRQKFKEERDKIGITCKRCNCKDHYWLENKSSYECKKCHSRTSLRSGTVMENSKLPFRYWLLAIHLLTSTRKSFSTEELRRQLGH
KRYQPIWEMVCKLREVMGKRDDKYKLAGQIELDDAFFTSEVPEDQKGKPLKRGRGSQSKAKVLVMCESTPRDTPKKGRKDKKAGHLKMKVIPDLKSGTIT
SVVKERVDGESDLTSDDSTSYVKLEQLVNSHTSRVVKPEEVEKVLPWVHTAISNVKRLLLDVHHNKLKPEYLQYYLNEFCYKFNRRFFPEKLFDRLVIAA
VSYCPDFKSKIYNRSYCG

 

Blast result :
Comments
ISPba2 is 76% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.