ISCrsp1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LGIP01000002 ND Chryseobacterium sp.
Chryseobacterium sp. Hurlbut01
DNA section
IS Length : 998 bp

Ends


IR Length : 20/26

IRL : AATGAATCCTCGATATATTACCTAAATTTTGTAACTTAGTATCAAATAGT
IRR : AATGACTACTTGATATTATGCCTAAAACTATTTTTTTGAGATATAGAAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GGTTATTAATTGTTTTTATTTGATTCA7

DNA sequence

AATGAATCCTCGATATATTACCTAAATTTTGTAACTTAGTATCAAATAGTTATCATGAACCTACTCAATTTCGTAGAGCAATATCCTGATGAGGCAAGTT
GCAAATCAAAATGGAAAGAATTTCGGGACAAGCAAGGCGTAGAATGTCCCAAATGCGGCGGAAAGGAGCATTACTGGAAGCAAGACAAAGAGCAGTATGA
GTGTAAAAACTGCAAATACCGGCAAAGTTTGCGCAGTAACACAGTGATGCACGGCAGCCAGCTGCCTTTCCGCTACTGGTTTATTGCGATGCATCTGCTT
ACCTCGACCAAAAAAAGTTTTTCGGCACTTGAGCTGCAACGGCAATTGGGACACAAATATTACAATCCTATATGGGAATTGCTGCATAAATTACGCGCTG
CAATGGGCAACCGGGATGCCAATTATACGTTGTCTGATGTAATCGAATTGGATGAGGGCTTTTTTTCGACAGAAATTCCCGATGAGGAAAAAGAAAAACC
GTTAAAAAGAGGACGTGGAAGCCAAAAGAAAAGCAAGGTTCTGGTGATGGTGGAAAGCCGTCCCGTAGAAGAAAAAACCAGGAAAAAAGGAAAATCCAGA
CAAGTAGGATACCTGAAAATGAAAGTGATAAACGACTTGAAATCAGAAACGATAACTCCGTTGGTAAAAGAAAATGTGGAAGAAACTGCAACGATAGATT
CGGACGATTCCACCTCATATACCAGATTGGGAGAAGTTGTGAAAGAGCATCGCCCAAAAGTAATTCCAAAGAAAGAGATTGGAAAAATGTTACCTTGGGT
GCATATTGCAATCAGCAATGCCAAACGTATGCTGTTAGATGTTTTCCACGACATCAAACCGGAATATTTGCAAAGCTACCTCAATGAGTACTGCTACAAG
TTCAACCGAAGATACTTTGGAGAATCCCTGTTCGACAGGCTTGTGGTAGCTTCTATATCTCAAAAAAATAGTTTTAGGCATAATATCAAGTAGTCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa55993+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLLNFVEQYPDEASCKSKWKEFRDKQGVECPKCGGKEHYWKQDKEQYECKNCKYRQSLRSNTVMHGSQLPFRYWFIAMHLLTSTKKSFSALELQRQLGH
KYYNPIWELLHKLRAAMGNRDANYTLSDVIELDEGFFSTEIPDEEKEKPLKRGRGSQKKSKVLVMVESRPVEEKTRKKGKSRQVGYLKMKVINDLKSETI
TPLVKENVEETATIDSDDSTSYTRLGEVVKEHRPKVIPKKEIGKMLPWVHIAISNAKRMLLDVFHDIKPEYLQSYLNEYCYKFNRRYFGESLFDRLVVAS
ISQKNSFRHNIK

 

Blast result :
Comments
ISCrsp1 is 79% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Couger,M.B., Hurlbut,A., Murphy,C.L., Budd,C., French,D.P., Hoff,W.D., Elshahed,M.S. and Youssef,N.H. (2015) Genome Announc 3 (5), e01071-15.