ISCrsp1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LGIP01000002 | ND | Chryseobacterium sp. | Chryseobacterium sp. Hurlbut01 |
DNA section
IS Length : 998 bp
Ends
IR Length : 20/26
IRL : AATGAATCCTCGATATATTACCTAAATTTTGTAACTTAGTATCAAATAGT
IRR : AATGACTACTTGATATTATGCCTAAAACTATTTTTTTGAGATATAGAAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTTATTAAT | TGTTTTT | ATTTGATTCA | 7 |
DNA sequence
AATGAATCCTCGATATATTACCTAAATTTTGTAACTTAGTATCAAATAGTTATCATGAACCTACTCAATTTCGTAGAGCAATATCCTGATGAGGCAAGTT
GCAAATCAAAATGGAAAGAATTTCGGGACAAGCAAGGCGTAGAATGTCCCAAATGCGGCGGAAAGGAGCATTACTGGAAGCAAGACAAAGAGCAGTATGA
GTGTAAAAACTGCAAATACCGGCAAAGTTTGCGCAGTAACACAGTGATGCACGGCAGCCAGCTGCCTTTCCGCTACTGGTTTATTGCGATGCATCTGCTT
ACCTCGACCAAAAAAAGTTTTTCGGCACTTGAGCTGCAACGGCAATTGGGACACAAATATTACAATCCTATATGGGAATTGCTGCATAAATTACGCGCTG
CAATGGGCAACCGGGATGCCAATTATACGTTGTCTGATGTAATCGAATTGGATGAGGGCTTTTTTTCGACAGAAATTCCCGATGAGGAAAAAGAAAAACC
GTTAAAAAGAGGACGTGGAAGCCAAAAGAAAAGCAAGGTTCTGGTGATGGTGGAAAGCCGTCCCGTAGAAGAAAAAACCAGGAAAAAAGGAAAATCCAGA
CAAGTAGGATACCTGAAAATGAAAGTGATAAACGACTTGAAATCAGAAACGATAACTCCGTTGGTAAAAGAAAATGTGGAAGAAACTGCAACGATAGATT
CGGACGATTCCACCTCATATACCAGATTGGGAGAAGTTGTGAAAGAGCATCGCCCAAAAGTAATTCCAAAGAAAGAGATTGGAAAAATGTTACCTTGGGT
GCATATTGCAATCAGCAATGCCAAACGTATGCTGTTAGATGTTTTCCACGACATCAAACCGGAATATTTGCAAAGCTACCTCAATGAGTACTGCTACAAG
TTCAACCGAAGATACTTTGGAGAATCCCTGTTCGACAGGCTTGTGGTAGCTTCTATATCTCAAAAAAATAGTTTTAGGCATAATATCAAGTAGTCATT
GCAAATCAAAATGGAAAGAATTTCGGGACAAGCAAGGCGTAGAATGTCCCAAATGCGGCGGAAAGGAGCATTACTGGAAGCAAGACAAAGAGCAGTATGA
GTGTAAAAACTGCAAATACCGGCAAAGTTTGCGCAGTAACACAGTGATGCACGGCAGCCAGCTGCCTTTCCGCTACTGGTTTATTGCGATGCATCTGCTT
ACCTCGACCAAAAAAAGTTTTTCGGCACTTGAGCTGCAACGGCAATTGGGACACAAATATTACAATCCTATATGGGAATTGCTGCATAAATTACGCGCTG
CAATGGGCAACCGGGATGCCAATTATACGTTGTCTGATGTAATCGAATTGGATGAGGGCTTTTTTTCGACAGAAATTCCCGATGAGGAAAAAGAAAAACC
GTTAAAAAGAGGACGTGGAAGCCAAAAGAAAAGCAAGGTTCTGGTGATGGTGGAAAGCCGTCCCGTAGAAGAAAAAACCAGGAAAAAAGGAAAATCCAGA
CAAGTAGGATACCTGAAAATGAAAGTGATAAACGACTTGAAATCAGAAACGATAACTCCGTTGGTAAAAGAAAATGTGGAAGAAACTGCAACGATAGATT
CGGACGATTCCACCTCATATACCAGATTGGGAGAAGTTGTGAAAGAGCATCGCCCAAAAGTAATTCCAAAGAAAGAGATTGGAAAAATGTTACCTTGGGT
GCATATTGCAATCAGCAATGCCAAACGTATGCTGTTAGATGTTTTCCACGACATCAAACCGGAATATTTGCAAAGCTACCTCAATGAGTACTGCTACAAG
TTCAACCGAAGATACTTTGGAGAATCCCTGTTCGACAGGCTTGTGGTAGCTTCTATATCTCAAAAAAATAGTTTTAGGCATAATATCAAGTAGTCATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 55 | 993 | + | No |
Chemistry : DDE
ORF sequence :
MNLLNFVEQYPDEASCKSKWKEFRDKQGVECPKCGGKEHYWKQDKEQYECKNCKYRQSLRSNTVMHGSQLPFRYWFIAMHLLTSTKKSFSALELQRQLGH
KYYNPIWELLHKLRAAMGNRDANYTLSDVIELDEGFFSTEIPDEEKEKPLKRGRGSQKKSKVLVMVESRPVEEKTRKKGKSRQVGYLKMKVINDLKSETI
TPLVKENVEETATIDSDDSTSYTRLGEVVKEHRPKVIPKKEIGKMLPWVHIAISNAKRMLLDVFHDIKPEYLQSYLNEYCYKFNRRYFGESLFDRLVVAS
ISQKNSFRHNIK
KYYNPIWELLHKLRAAMGNRDANYTLSDVIELDEGFFSTEIPDEEKEKPLKRGRGSQKKSKVLVMVESRPVEEKTRKKGKSRQVGYLKMKVINDLKSETI
TPLVKENVEETATIDSDDSTSYTRLGEVVKEHRPKVIPKKEIGKMLPWVHIAISNAKRMLLDVFHDIKPEYLQSYLNEYCYKFNRRYFGESLFDRLVVAS
ISQKNSFRHNIK
Blast result :
Comments
ISCrsp1 is 79% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Couger,M.B., Hurlbut,A., Murphy,C.L., Budd,C., French,D.P., Hoff,W.D., Elshahed,M.S. and Youssef,N.H. (2015) Genome Announc 3 (5), e01071-15.
2] Couger,M.B., Hurlbut,A., Murphy,C.L., Budd,C., French,D.P., Hoff,W.D., Elshahed,M.S. and Youssef,N.H. (2015) Genome Announc 3 (5), e01071-15.