ISAfa1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNAC01000030 ND Algoriphagus faecimaris
Algoriphagus faecimaris DSM 23095
DNA section
IS Length : 1040 bp

Ends


IR Length : 21/26

IRL : TATGACTCTTCGGAATTCTACACGTAGCCAAATATTCTTAGACAGCTAGT
IRR : TATGACTATTCGTAATGTTGCACGTATGGATAGACGGCTGCAATAACGAG

Insertion site


Left flankDirect repeatRight flankDR Length
AAATGACATCAAATTAATAGAAAAAGCGTAATTAAA8

DNA sequence

TATGACTCTTCGGAATTCTACACGTAGCCAAATATTCTTAGACAGCTAGTGACAATAGTTTCCATAGTCGTGAAGATAAGCGGTACTTGTGTAAAAATAA
ACAAGCCCATGAATATCATAGATTTTATCCACCATTTTCCAAACGAGGAAAGCTGTGAAATCTTTCTGAAAGATTATCGGCAAAAAGCAGGGATTTACTG
CAAAACATGCAAAGGCTTTCCAAAGCACTACTGGTTTTCGGGCAGGAAGTTCTTCGAATGCAGTGTTTGCCGAAGGAGAACCTCCTTAAAAGCCGGAACG
GTGATGGAGTCCAGCAATCTATCGCTGCATACTTGGTTTACTGCGTTTCTGTTGATGTCAGCTACCAAAAAAGGCTTCTCCTGCTTGGAGTTCCAAAGAC
AGCTTGGACTCAAACGATACCAAACAGCTTTCAGTCTGATGCATAAGATCAGAGCAGTCATGGGCAAGCGGGACGGTCTTTATTTGCTCAAGGGAATGGT
GGAATACGACGAGGCCTATGTTGAAAAAGCAACCCGTAAAAGGGTTCAGGAGCAGCTAAAGCGGGGAAAAGGCAGTCAGAAACAGGCGATTGTCGCAGTG
GCTTCCGAATCCACCCCTTTGGAAGATCCTGAATCCGGTAAAAAAGGAAGCCATTGTGGCTTTTTCAAATTGAAAGTGCTTAAGGATGCAACCAGTGATT
CGGTGGAACAGTTTGTGGAAACTAACGTGGATTCTTCATCGGTGTTATTTACAGACAAAAACACAGCCTATGTCGATCTGGAAAAAATGGTAGAGGAGCA
CATCAAAGTGAAATCCTCCAAGGATTCAGCGAATGGAACGCTCAATTGGGTTCACACGGCGATTAGCAACCTGAAGAAAAATCTCCTGGGGATTTATCAC
ATGGTTTCAGAAAAATACCTGCAAAACTATCTGGATGAATTTGCTTACAAGCTCAACAGAAGATACTTTGGAGAAAAATTATTTGACAGACTCGTTATTG
CAGCCGTCTATCCATACGTGCAACATTACGAATAGTCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa1091035+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIIDFIHHFPNEESCEIFLKDYRQKAGIYCKTCKGFPKHYWFSGRKFFECSVCRRRTSLKAGTVMESSNLSLHTWFTAFLLMSATKKGFSCLEFQRQLG
LKRYQTAFSLMHKIRAVMGKRDGLYLLKGMVEYDEAYVEKATRKRVQEQLKRGKGSQKQAIVAVASESTPLEDPESGKKGSHCGFFKLKVLKDATSDSVE
QFVETNVDSSSVLFTDKNTAYVDLEKMVEEHIKVKSSKDSANGTLNWVHTAISNLKKNLLGIYHMVSEKYLQNYLDEFAYKLNRRYFGEKLFDRLVIAAV
YPYVQHYE

 

Blast result :
Comments
ISAfa1 is 66% aa similar to ISAlg2.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.